FC931139

Overview
NameFC931139
Unique NameFC931139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_NITEC (Aspartate carbamoyltransferase OS=Nitrosomonas eutropha (strain C91) GN=pyrB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 71/197 (36.04%), Postives = 106/197 (53.81%), Query Frame = 3
Query:   81 IGKKFQLDDVIEAQQFDRDILNAIFEVAREMEKI-EKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEG-YSDIIVMRHFESGAARRAATTA--VIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            + K  +L  ++  +     IL  I + A     + E++     +L+G  +  LF+EPSTRTR +FE A KRL  +V+    A   S   KGETL DT+  +   ++D+ V+RH +SGAA   A      I VINAGDG   HPTQALLD++TI R       ++V ++GD+ + R  RS  + L      +I  ++P
Sbjct:    7 LNKNGELQHLLTTEGLPVTILRHILDTAESFTGVTERDVKKIPLLRGKSVFNLFFEPSTRTRTTFEIAAKRLSADVINLSMA--VSSQTKGETLLDTVNNLSAMHADMFVVRHNQSGAAHLIARHVGPEIHVINAGDGWHAHPTQALLDMFTIRRYKQDFHTLRVAIIGDILHSRVARSQIHALTTLGVPEIRVIAP 201          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_MARMM (Aspartate carbamoyltransferase OS=Maricaulis maris (strain MCS10) GN=pyrB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 63/141 (44.68%), Postives = 89/141 (63.12%), Query Frame = 3
Query:  201 SQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYS-DIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLL 620
            S +L+G  +  LF+E STRT+ SFE A KRLG +V+    A   S A+KGE+L DT RT+     DI+V+RH  +GA +  A    + V+NAGDG  +HPTQALLD +T+ +  G + G ++ +VGD+ + R  RS   LL
Sbjct:   47 SDVLRGLTVLNLFFEASTRTQGSFEMAGKRLGADVVNFAVAH--SSASKGESLSDTARTLAAMKPDIMVVRHSATGAPQFLADHTGLAVVNAGDGMHEHPTQALLDSFTLSQHWGSVGGRRILIVGDILHSRVARSNIGLL 185          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_MACCJ (Aspartate carbamoyltransferase OS=Macrococcus caseolyticus (strain JCSC5402) GN=pyrB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 63/147 (42.86%), Postives = 90/147 (61.22%), Query Frame = 3
Query:  228 ATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYS-DIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGV 665
            A LF+E STRT+ SFE A ++LG +V+  E +   S   KGE+L DT +T+E    D++V+RH E+    +      IPV+N GDG GQHPTQ LLD+ TI  E GK +G+K+ + GD+ N R  RS  + L      ++ FV+P +
Sbjct:   39 ANLFFENSTRTKCSFEMAERKLGLQVIPFETST--SSVTKGESLYDTCKTLESIGCDVLVIRHPENNYYEQLHELN-IPVVNGGDGSGQHPTQCLLDLMTIYEEYGKFEGLKIIICGDILNSRVARSNYHALTSL-GAQVKFVAPEI 181          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_LACC3 (Aspartate carbamoyltransferase OS=Lactobacillus casei (strain ATCC 334) GN=pyrB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 73/190 (38.42%), Postives = 101/190 (53.16%), Query Frame = 3
Query:  105 DVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYS-DIIVMRHFESGAARRAA----TTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            D + A+Q D     A+   A +     K        +    A LF+E STRT  SFE A ++LG  V+  + A   S  +KGETLEDTI+T+     +I VMRH + G          TTA++   NAGDG GQHP+Q +LD+ TI  E G  DG+ +G+VGDL++ R  RS   +L K     ++F  P
Sbjct:   13 DFVSAEQVDDKSAMALINRAEDF----KAGQTVHFPEPIYAANLFFENSTRTHTSFEMAERKLGLTVIPFDPAH--SSVSKGETLEDTIKTIGAIGVNIAVMRHAQDGYYNDLLGAWPTTAIV---NAGDGAGQHPSQMMLDLMTIHEEFGHFDGLSIGIVGDLSHSRVARSDMQMLHKL-GATLHFAGP 192          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_GEMAT (Aspartate carbamoyltransferase OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=pyrB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 64/140 (45.71%), Postives = 85/140 (60.71%), Query Frame = 3
Query:  210 LKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYS-DIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAK 626
            L+G  +  LF+E STRTR+SFE A KRL  + +    A   S  +KGETL DT R +E    D++V+RH  SGAAR  A      VINAGDG  +HPTQ LLD+ T+   +G L G ++ +VGD+ + R  RS  + L K
Sbjct:   44 LRGATIVNLFFEASTRTRISFEFAEKRLSADTVNVAVAG--SSVSKGETLVDTARNLEAMKIDMVVIRHPASGAARFLAERIESNVINAGDGTNEHPTQGLLDMLTLRDRLGDLAGKRICIVGDVLHSRVARSNIWGLKK 181          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_DIAST (Aspartate carbamoyltransferase OS=Diaphorobacter sp. (strain TPSY) GN=pyrB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 72/197 (36.55%), Postives = 102/197 (51.78%), Query Frame = 3
Query:   81 IGKKFQLDDVIEAQQFDRDILNAIFEVAREMEKI-EKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYS-DIIVMRHFESGAARRAATTAV--IPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            + K  +L  ++  +   +DI+  I + A     + E+      +L+G  +  LF+E STRTR +FE A KRL  +V   + AR  S  AKGETL DTI  +   + DI V+RH ESGA    A      + V+NAGDG   HPTQ LLD+YTI         + V +VGD+ + R  RS  + L      ++  V P
Sbjct:    9 LNKNGELIHLLSIEGLPKDIVTHILDTATNFVSVQEREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVFNLDIAR--SSTAKGETLLDTIDNLSAMAADIFVVRHSESGAPYLIAQHVAPHVHVVNAGDGRHSHPTQGLLDMYTIRHYKKDFSNLTVAIVGDVLHSRVARSDIHALTTLGAAEVRVVGP 203          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_DELAS (Aspartate carbamoyltransferase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=pyrB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 71/197 (36.04%), Postives = 104/197 (52.79%), Query Frame = 3
Query:   81 IGKKFQLDDVIEAQQFDRDILNAIFEVAREMEKI-EKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYS-DIIVMRHFESGAARRAATTAV--IPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            + K  +L  ++  +   +DIL  I + A     + ++      +L+G  +  LF+E STRTR +FE A KRL  +V   + AR  S A+KGE+L DTI  +   + DI V+RH ESGA    A      + V+NAGDG   HPTQ LLD+YTI         ++V +VGD+ + R  RS  + L      ++  V P
Sbjct:    9 LNKNGELIHLLSTEGLSKDILTHILDTAANFVSVNDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVFNLDIAR--SSASKGESLLDTIANLSAMAADIFVVRHSESGAPYLIAQHVAPHVHVVNAGDGRHAHPTQGLLDMYTIRHYKKDFANLRVAIVGDVLHSRVARSDIHALTTLGAAEVRVVGP 203          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_CAMJJ (Aspartate carbamoyltransferase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=pyrB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 71/172 (41.28%), Postives = 100/172 (58.14%), Query Frame = 3
Query:  150 IFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYS-DIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREI-GKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            I E+ +E        P +  LKG  + T+F+E STRT  SFESA +RLG  VL  + +R  S ++KGETL DT   ++  S + IV+RH  SG     A     PV+N GDG   HPTQALLD++TI     G ++G K+ +VGD+ N R   S   LL+++ ++ I  V+P
Sbjct:   15 IMELFKEASDFLDEKPRT-FLKGKSITTIFFENSTRTLSSFESAARRLGARVLRLDVSR--SSSSKGETLYDTAANLDAMSPNAIVVRHANSGVPLILAKHMHCPVVNGGDGKHAHPTQALLDLFTIYNHFQGDVEGKKICIVGDIKNSRVAASNIELLSRF-NLDITLVAP 182          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_CAMJ8 (Aspartate carbamoyltransferase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=pyrB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 71/172 (41.28%), Postives = 100/172 (58.14%), Query Frame = 3
Query:  150 IFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYS-DIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREI-GKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            I E+ +E        P +  LKG  + T+F+E STRT  SFESA +RLG  VL  + +R  S ++KGETL DT   ++  S + IV+RH  SG     A     PV+N GDG   HPTQALLD++TI     G ++G K+ +VGD+ N R   S   LL+++ ++ I  V+P
Sbjct:   15 IMELFKEASDFLDEKPRT-FLKGKSITTIFFENSTRTLSSFESAARRLGARVLRLDVSR--SSSSKGETLYDTAANLDAMSPNAIVVRHANSGVPLILAKHIHCPVVNGGDGKHAHPTQALLDLFTIYNHFQGDVEGKKICIVGDIKNSRVAASNIELLSRF-NLDITLVAP 182          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_BRASO (Aspartate carbamoyltransferase OS=Bradyrhizobium sp. (strain ORS278) GN=pyrB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 69/179 (38.55%), Postives = 98/179 (54.75%), Query Frame = 3
Query:  135 DILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEG-YSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVV 668
            D+     E+ R+++K         +L+G     LF+E STRT+ SFE A KRLG +V+    +   S   KGETL DT  T+   + DI+V+RH  SGA    A      VINAGDG  +HPTQALLD  TI R  G+++G+ + + GD+ + R  RS   LL      ++  V+P  +
Sbjct:   32 DLSEEYVELNRQVDKKRT------VLRGRTQVNLFFEASTRTQSSFELAGKRLGADVMNMSVSS--SSIKKGETLIDTAVTLNAMHPDILVVRHHASGAVELLARKVDGSVINAGDGAHEHPTQALLDALTIRRNKGRIEGLVIAICGDVLHSRVARS-NILLLNTMGARVRVVAPSTL 201          
The following BLAST results are available for this feature:
BLAST of FC931139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PYRB_NITEC2.405e-2336.04Aspartate carbamoyltransferase OS=Nitrosomonas eut... [more]
PYRB_MARMM2.405e-2344.68Aspartate carbamoyltransferase OS=Maricaulis maris... [more]
PYRB_MACCJ2.405e-2342.86Aspartate carbamoyltransferase OS=Macrococcus case... [more]
PYRB_LACC32.405e-2338.42Aspartate carbamoyltransferase OS=Lactobacillus ca... [more]
PYRB_GEMAT2.405e-2345.71Aspartate carbamoyltransferase OS=Gemmatimonas aur... [more]
PYRB_DIAST2.405e-2336.55Aspartate carbamoyltransferase OS=Diaphorobacter s... [more]
PYRB_DELAS2.405e-2336.04Aspartate carbamoyltransferase OS=Delftia acidovor... [more]
PYRB_CAMJJ2.405e-2341.28Aspartate carbamoyltransferase OS=Campylobacter je... [more]
PYRB_CAMJ82.405e-2341.28Aspartate carbamoyltransferase OS=Campylobacter je... [more]
PYRB_BRASO2.405e-2338.55Aspartate carbamoyltransferase OS=Bradyrhizobium s... [more]

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Properties
Property NameValue
Genbank descriptionC34101H07EF PostHarvP1 Citrus clementina cDNA clone C34101H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931139 ID=FC931139; Name=FC931139; organism=Citrus clementina; type=EST; length=685bp
GGAAGCAGACCCAGCAGTTGCCCTCAAGGAATTCAATCCAGTGCTGGGCA
ATAGAAACTCAAAGTACCCCCTCATTTACCATCGGGAAGAAGTTTCAACT
TGATGACGTGATTGAAGCACAACAGTTTGATAGAGACATTCTTAATGCTA
TATTTGAAGTTGCGCGTGAAATGGAGAAGATAGAAAAGAATTCACCTGGA
AGCCAAATTCTTAAAGGTTACCTAATGGCTACTCTGTTTTATGAGCCCTC
TACTAGAACTAGGCTTTCATTTGAGTCTGCTATGAAGCGGTTAGGTGGGG
AAGTTTTGACTACAGAAAATGCTAGGGAATTTTCATTTGCAGCAAAGGGG
GAGACACTGGAAGACACTATAAGGACTGTTGAGGGGTACTCTGATATAAT
AGTTATGCGGCATTTTGAAAGCGGAGCTGCCAGAAGAGCTGCAACAACAG
CTGTCATTCCTGTCATAAATGCTGGAGATGGTCCTGGACAGCATCCAACT
CAGGCTCTTTTAGATGTCTATACTATTGAAAGAGAGATAGGCAAGCTGGA
TGGCATTAAAGTTGGGCTTGTGGGAGATCTAGCTAATGGAAGAACAGTCC
GCTCGCTTGCTTACTTGCTTGCCAAATACCAAGATGTGAAGATCTACTTT
GTCTCTCCTGGTGTAGTAAAATGAAGGATGATATC
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