FC931139

Overview
NameFC931139
Unique NameFC931139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_AZOC5 (Aspartate carbamoyltransferase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=pyrB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 72/191 (37.70%), Postives = 101/191 (52.88%), Query Frame = 3 
Query:   63 STPSFTIGKKFQLDDVIEAQQFDRDILNAIFEVAREM----EKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYS-DIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLL 620
            + P FT+ ++    D++  +      +  + ++A E      +IEK       L+G     LF+E STRT+ SFE A KRLG +V+        S   KGETL DT  T+     DI+V+RH  SGA    A      V+NAGDG  +HPTQALLD  TI R  G+++G+ V + GD+ + R  RS   LL
Sbjct:    3 TAPFFTLDRR----DLLGIEGLSAPEIVGLLDLAEEFVVLNRQIEKKR---STLRGRTQVNLFFEASTRTQSSFELAGKRLGADVMNMSVGN--SSVKKGETLIDTAMTLNAMRPDILVVRHHASGAVALLARKVDCCVVNAGDGAHEHPTQALLDALTIRRNKGRIEGLTVAVCGDVLHSRVARSNILLL 184
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_ACISJ (Aspartate carbamoyltransferase OS=Acidovorax sp. (strain JS42) GN=pyrB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 72/197 (36.55%), Postives = 102/197 (51.78%), Query Frame = 3 
Query:   81 IGKKFQLDDVIEAQQFDRDILNAIFEVAREMEKI-EKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYS-DIIVMRHFESGAARRAATTAV--IPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            + K  +L  ++  +   +DI+  I + A     + E+      +L+G  +  LF+E STRTR +FE A KRL  +V   + AR  S  AKGETL DTI  +   + DI V+RH ESGA    A      + V+NAGDG   HPTQ LLD+YTI         + V +VGD+ + R  RS  + L      ++  V P
Sbjct:    9 LNKNGELIHLLSIEGLPKDIVTHILDTATNFVSVQEREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVFNLDIAR--SSTAKGETLLDTIDNLSAMAADIFVVRHSESGAPYLIAQHVAPHVHVVNAGDGRHSHPTQGLLDMYTIRHYKKDFSNLTVAIVGDVLHSRVARSDIHALTTLGAAEVRVVGP 203
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_ACIBY (Aspartate carbamoyltransferase OS=Acinetobacter baumannii (strain AYE) GN=pyrB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 68/173 (39.31%), Postives = 96/173 (55.49%), Query Frame = 3 
Query:   99 LDDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGY-SDIIVMRHFESGAARRAATTAV--IPVINAGDGPGQHPTQALLDVYTIEREIGK-LDGIKVGLVGDLANGRTVRS 605
            L   +  +   ++ L  I + A+       N     +L+G  +  LF+E STRTR +FE+A KRL   VL  + AR  S  +KGETL DT+  +E   +DI V+RH  SGAA   A      + +INAGDG   HPTQA+LD+ TI RE  K  + + V ++GD+ + R  RS
Sbjct:   20 LKHFLTIEGLSKENLTKILDTAQSFLDDNNNLINRPLLEGRTVMNLFFENSTRTRTTFEAAAKRLSANVLNIDIAR--SSTSKGETLRDTLWNLEAMAADIFVVRHSSSGAAHFIAKDVCPKVAIINAGDGRHAHPTQAMLDMLTIRRETKKSFEDLSVAIIGDIKHSRVARS 190
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_ACIBT (Aspartate carbamoyltransferase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=pyrB PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 68/173 (39.31%), Postives = 96/173 (55.49%), Query Frame = 3 
Query:   99 LDDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGY-SDIIVMRHFESGAARRAATTAV--IPVINAGDGPGQHPTQALLDVYTIEREIGK-LDGIKVGLVGDLANGRTVRS 605
            L   +  +   ++ L  I + A+       N     +L+G  +  LF+E STRTR +FE+A KRL   VL  + AR  S  +KGETL DT+  +E   +DI V+RH  SGAA   A      + +INAGDG   HPTQA+LD+ TI RE  K  + + V ++GD+ + R  RS
Sbjct:   20 LKHFLTIEGLSKENLTKILDTAQSFLDDNNNLINRPLLEGRTVMNLFFENSTRTRTTFEAAAKRLSANVLNIDIAR--SSTSKGETLRDTLWNLEAMAADIFVVRHSSSGAAHFIAKDVCPKVAIINAGDGRHAHPTQAMLDMLTIRRETKKPFEDLSVAIIGDIKHSRVARS 190
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_ACIBC (Aspartate carbamoyltransferase OS=Acinetobacter baumannii (strain ACICU) GN=pyrB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 68/173 (39.31%), Postives = 96/173 (55.49%), Query Frame = 3 
Query:   99 LDDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGY-SDIIVMRHFESGAARRAATTAV--IPVINAGDGPGQHPTQALLDVYTIEREIGK-LDGIKVGLVGDLANGRTVRS 605
            L   +  +   ++ L  I + A+       N     +L+G  +  LF+E STRTR +FE+A KRL   VL  + AR  S  +KGETL DT+  +E   +DI V+RH  SGAA   A      + +INAGDG   HPTQA+LD+ TI RE  K  + + V ++GD+ + R  RS
Sbjct:   20 LKHFLTIEGLSKENLTKILDTAQSFLDDNNNLINRPLLEGRTVMNLFFENSTRTRTTFEAAAKRLSANVLNIDIAR--SSTSKGETLRDTLWNLEAMAADIFVVRHSSSGAAHFIAKDVCPKVAIINAGDGRHAHPTQAMLDMLTIRRETKKPFEDLSVAIIGDIKHSRVARS 190
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_ACIB5 (Aspartate carbamoyltransferase OS=Acinetobacter baumannii (strain AB0057) GN=pyrB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 68/173 (39.31%), Postives = 96/173 (55.49%), Query Frame = 3 
Query:   99 LDDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGY-SDIIVMRHFESGAARRAATTAV--IPVINAGDGPGQHPTQALLDVYTIEREIGK-LDGIKVGLVGDLANGRTVRS 605
            L   +  +   ++ L  I + A+       N     +L+G  +  LF+E STRTR +FE+A KRL   VL  + AR  S  +KGETL DT+  +E   +DI V+RH  SGAA   A      + +INAGDG   HPTQA+LD+ TI RE  K  + + V ++GD+ + R  RS
Sbjct:   20 LKHFLTIEGLSKENLTKILDTAQSFLDDNNNLINRPLLEGRTVMNLFFENSTRTRTTFEAAAKRLSANVLNIDIAR--SSTSKGETLRDTLWNLEAMAADIFVVRHSSSGAAHFIAKDVCPKVAIINAGDGRHAHPTQAMLDMLTIRRETKKSFEDLSVAIIGDIKHSRVARS 190
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_ACIB3 (Aspartate carbamoyltransferase OS=Acinetobacter baumannii (strain AB307-0294) GN=pyrB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 68/173 (39.31%), Postives = 96/173 (55.49%), Query Frame = 3 
Query:   99 LDDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGY-SDIIVMRHFESGAARRAATTAV--IPVINAGDGPGQHPTQALLDVYTIEREIGK-LDGIKVGLVGDLANGRTVRS 605
            L   +  +   ++ L  I + A+       N     +L+G  +  LF+E STRTR +FE+A KRL   VL  + AR  S  +KGETL DT+  +E   +DI V+RH  SGAA   A      + +INAGDG   HPTQA+LD+ TI RE  K  + + V ++GD+ + R  RS
Sbjct:   20 LKHFLTIEGLSKENLTKILDTAQSFLDDNNNLINRPLLEGRTVMNLFFENSTRTRTTFEAAAKRLSANVLNIDIAR--SSTSKGETLRDTLWNLEAMAADIFVVRHSSSGAAHFIAKDVCPKVAIINAGDGRHAHPTQAMLDMLTIRRETKKSFEDLSVAIIGDIKHSRVARS 190
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_SINMW (Aspartate carbamoyltransferase OS=Sinorhizobium medicae (strain WSM419) GN=pyrB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23
Identity = 69/172 (40.12%), Postives = 94/172 (54.65%), Query Frame = 3 
Query:  156 EVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEG-YSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVV 668
            +++R+ EK   +      L+G     LF+E STRT+ SFE A KRLG +V+        S   KGETL DT  T+   + D++V+RH  +GAA   A      V+NAGDG  +HPTQALLD  TI R  GKL  I V + GD+ + R  RS   LL      ++  V+P  +
Sbjct:   32 KISRQREKKTSS------LRGLTQINLFFEASTRTQSSFELAGKRLGADVMNMSVGN--SSVKKGETLIDTAMTLNAMHPDVLVVRHSSAGAASLLAQKVSCSVVNAGDGQHEHPTQALLDALTIRRAKGKLSRIIVAICGDVLHSRVARS-NILLLNQMGARVRVVAPATL 194
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_RHOPB (Aspartate carbamoyltransferase OS=Rhodopseudomonas palustris (strain BisB18) GN=pyrB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23
Identity = 68/179 (37.99%), Postives = 98/179 (54.75%), Query Frame = 3 
Query:  135 DILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEG-YSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVV 668
            D+     E+ R+++K   +      L+G     LF+E STRT+ SFE A KRLG +V+    +   S   KGETL DT  T+   + D++V+RH  SGA    A      V+NAGDG  +HPTQALLD  TI R  G+L+G+ + + GD+ + R  RS   LL      ++  V+P  +
Sbjct:   32 DLSEEYVELNRQIDKKRTS------LRGRTQVNLFFEASTRTQSSFEIAGKRLGADVMNMSVSS--SSMRKGETLIDTAVTLNAMHPDLLVVRHHASGAVELLARKVDGSVVNAGDGAHEHPTQALLDALTIRRNKGRLEGLTIAICGDVMHSRVARS-NILLLNIMGARVRVVAPSTL 201
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_RHISN (Aspartate carbamoyltransferase OS=Rhizobium sp. (strain NGR234) GN=pyrB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23
Identity = 69/172 (40.12%), Postives = 94/172 (54.65%), Query Frame = 3 
Query:  156 EVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEG-YSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVV 668
            +++R+ EK   +      L+G     LF+E STRT+ SFE A KRLG +V+        S   KGETL DT  T+   + D++V+RH  +GAA   A      V+NAGDG  +HPTQALLD  TI R  GKL  I V + GD+ + R  RS   LL      ++  V+P  +
Sbjct:   32 KISRQREKKTSS------LRGLTQINLFFEASTRTQSSFELAGKRLGADVMNMSVGN--SSVKKGETLIDTAMTLNAMHPDVLVVRHSSAGAAALLAQKVSCSVVNAGDGQHEHPTQALLDALTIRRAKGKLSRIIVAICGDVLHSRVARS-NILLLNQMGARVRVVAPATL 194
The following BLAST results are available for this feature:
BLAST of FC931139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PYRB_AZOC52.405e-2337.70Aspartate carbamoyltransferase OS=Azorhizobium cau... [more]
PYRB_ACISJ2.405e-2336.55Aspartate carbamoyltransferase OS=Acidovorax sp. (... [more]
PYRB_ACIBY2.405e-2339.31Aspartate carbamoyltransferase OS=Acinetobacter ba... [more]
PYRB_ACIBT2.405e-2339.31Aspartate carbamoyltransferase OS=Acinetobacter ba... [more]
PYRB_ACIBC2.405e-2339.31Aspartate carbamoyltransferase OS=Acinetobacter ba... [more]
PYRB_ACIB52.405e-2339.31Aspartate carbamoyltransferase OS=Acinetobacter ba... [more]
PYRB_ACIB32.405e-2339.31Aspartate carbamoyltransferase OS=Acinetobacter ba... [more]
PYRB_SINMW3.141e-2340.12Aspartate carbamoyltransferase OS=Sinorhizobium me... [more]
PYRB_RHOPB3.141e-2337.99Aspartate carbamoyltransferase OS=Rhodopseudomonas... [more]
PYRB_RHISN3.141e-2340.12Aspartate carbamoyltransferase OS=Rhizobium sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionC34101H07EF PostHarvP1 Citrus clementina cDNA clone C34101H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931139 ID=FC931139; Name=FC931139; organism=Citrus clementina; type=EST; length=685bp
GGAAGCAGACCCAGCAGTTGCCCTCAAGGAATTCAATCCAGTGCTGGGCA
ATAGAAACTCAAAGTACCCCCTCATTTACCATCGGGAAGAAGTTTCAACT
TGATGACGTGATTGAAGCACAACAGTTTGATAGAGACATTCTTAATGCTA
TATTTGAAGTTGCGCGTGAAATGGAGAAGATAGAAAAGAATTCACCTGGA
AGCCAAATTCTTAAAGGTTACCTAATGGCTACTCTGTTTTATGAGCCCTC
TACTAGAACTAGGCTTTCATTTGAGTCTGCTATGAAGCGGTTAGGTGGGG
AAGTTTTGACTACAGAAAATGCTAGGGAATTTTCATTTGCAGCAAAGGGG
GAGACACTGGAAGACACTATAAGGACTGTTGAGGGGTACTCTGATATAAT
AGTTATGCGGCATTTTGAAAGCGGAGCTGCCAGAAGAGCTGCAACAACAG
CTGTCATTCCTGTCATAAATGCTGGAGATGGTCCTGGACAGCATCCAACT
CAGGCTCTTTTAGATGTCTATACTATTGAAAGAGAGATAGGCAAGCTGGA
TGGCATTAAAGTTGGGCTTGTGGGAGATCTAGCTAATGGAAGAACAGTCC
GCTCGCTTGCTTACTTGCTTGCCAAATACCAAGATGTGAAGATCTACTTT
GTCTCTCCTGGTGTAGTAAAATGAAGGATGATATC
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