FC931139

Overview
NameFC931139
Unique NameFC931139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_PSEAB (Aspartate carbamoyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=pyrB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.923e-22
Identity = 64/174 (36.78%), Postives = 97/174 (55.75%), Query Frame = 3
Query:   96 QLDDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGS-QILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYS-DIIVMRHFESGAARRAA--TTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRS 605
            QL   I      R++L  I + A    ++   +     +L+G  +  +F+E STRTR +FE A +RL  +V++   +   S  +KGETL DT+R +E  + D+ V+RH +SGAA   A   +  + VIN GDG   HPTQ +LD+ TI R  G  + + V +VGD+ + R  RS
Sbjct:   16 QLRHFISLDGLPRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVISLNVST--SSTSKGETLTDTLRNLEAMAADMFVVRHSDSGAAHFIAEHVSPNVAVINGGDGRHAHPTQGMLDMLTIRRHKGNFEQLSVAIVGDILHSRVARS 187          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_PSEA8 (Aspartate carbamoyltransferase OS=Pseudomonas aeruginosa (strain LESB58) GN=pyrB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.923e-22
Identity = 64/174 (36.78%), Postives = 97/174 (55.75%), Query Frame = 3
Query:   96 QLDDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGS-QILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYS-DIIVMRHFESGAARRAA--TTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRS 605
            QL   I      R++L  I + A    ++   +     +L+G  +  +F+E STRTR +FE A +RL  +V++   +   S  +KGETL DT+R +E  + D+ V+RH +SGAA   A   +  + VIN GDG   HPTQ +LD+ TI R  G  + + V +VGD+ + R  RS
Sbjct:   16 QLRHFISLDGLPRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVISLNVST--SSTSKGETLTDTLRNLEAMAADMFVVRHSDSGAAHFIAEHVSPNVAVINGGDGRHAHPTQGMLDMLTIRRHKGNFEQLSVAIVGDILHSRVARS 187          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_PSEA7 (Aspartate carbamoyltransferase OS=Pseudomonas aeruginosa (strain PA7) GN=pyrB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.923e-22
Identity = 64/174 (36.78%), Postives = 97/174 (55.75%), Query Frame = 3
Query:   96 QLDDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGS-QILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYS-DIIVMRHFESGAARRAA--TTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRS 605
            QL   I      R++L  I + A    ++   +     +L+G  +  +F+E STRTR +FE A +RL  +V++   +   S  +KGETL DT+R +E  + D+ V+RH +SGAA   A   +  + VIN GDG   HPTQ +LD+ TI R  G  + + V +VGD+ + R  RS
Sbjct:   16 QLRHFISLDGLPRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVISLNVST--SSTSKGETLTDTLRNLEAMAADMFVVRHSDSGAAHFIAEHVSPNVAVINGGDGRHAHPTQGMLDMLTIRRHKGNFEQLSVAIVGDILHSRVARS 187          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_OCEIH (Aspartate carbamoyltransferase OS=Oceanobacillus iheyensis GN=pyrB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.923e-22
Identity = 71/193 (36.79%), Postives = 99/193 (51.30%), Query Frame = 3
Query:  111 IEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGY-SDIIVMRH--------FESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPG 662
            I   Q + D +  I   A E+     N    Q+  G     LF+EPSTRT++SF  A ++LG E+L      E S  AKGE+L DT +T E   ++ +V+RH         E G          IPVINAG G  +HPTQ LLD+ T+ +E G + G+KV + GD+ + R  +S A  L K     I+  +PG
Sbjct:    5 ISVNQLEADEMYQIIRKANELRD-RPNQLNRQLFAG----NLFFEPSTRTKMSFSVAERKLGVEILDFHT--EASSLAKGESLYDTAKTFEAIGANFLVIRHPSDQWISELEQGGKLN------IPVINAGSGKEEHPTQCLLDLLTMYQEFGSIKGLKVVIAGDIKHSRVAKSNAMALTKLGAKVIFSAAPG 184          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_MYCS2 (Aspartate carbamoyltransferase OS=Mycobacterium smegmatis GN=pyrB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.923e-22
Identity = 72/193 (37.31%), Postives = 105/193 (54.40%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEK--IEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGY-SDIIVMRHFESGAARRAATTAVIP------VINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            ++ A    RD   AI + A    +  + +       L+G  + T+FYE STRTR+SFE A K +  +V+    +   S  AKGE+L DT  T+    +D +++RH  SGAA++ A   V        VINAGDG  +HPTQALLD  TI + +G ++G +V +VGD+ + R  RS   LL      ++  VSP
Sbjct:    6 LLSAGDLTRDDATAILDDADRFREALLGREVKKLPTLRGRTIITMFYENSTRTRVSFEVAGKWMSADVINVSASG--SSVAKGESLRDTALTLRAAGADALIIRHPASGAAQQLAEWTVEEDGGGPSVINAGDGTHEHPTQALLDALTIRQRLGSVEGKRVVIVGDVLHSRVARSNVTLLHTL-GAEVVLVSP 195          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_RHOSR (Aspartate carbamoyltransferase OS=Rhodococcus sp. (strain RHA1) GN=pyrB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.736e-22
Identity = 64/168 (38.10%), Postives = 98/168 (58.33%), Query Frame = 3
Query:  156 EVAREMEKIEKNSPGSQI-----LKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGY-SDIIVMRHFESGAARRAAT------TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLA 623
            E+  E E+ E+   G ++     L+G  + T+F+E STRTR+SFE A K +  +V+    +   S  +KGE+L DT  T+    +D +++RH  SGAA + A            VINAGDG  +HPTQALLD  T+ + +G ++G ++ +VGD+ + R  RS A LL+
Sbjct:   17 ELLDEAERFEQALLGREVRKLPTLRGRTVMTVFFENSTRTRVSFEVAGKWMSADVINVSASS--SSVSKGESLRDTAMTLRAAGADALIVRHPASGAAHQIAKWTGHQDDGGPAVINAGDGTHEHPTQALLDALTLRQRLGDIEGKRIAIVGDILHSRVARSNALLLS 182          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_THIDA (Aspartate carbamoyltransferase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=pyrB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.010e-21
Identity = 66/180 (36.67%), Postives = 97/180 (53.89%), Query Frame = 3
Query:  132 RDILNAIFEVARE-MEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEG-YSDIIVMRHFESGAARRAATTAV--IPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            R  L  I + A   M+  E+      +L+G  +  LF+EPSTRTR +FE A KRL  +V+    A   S   KGE + DT+  +   ++D+ ++RH +SGAA   A      I V+NAGDG   HPTQ LLD++TI R  G+   + V +VGD+ + R  RS  + L      ++  + P
Sbjct:   22 RATLTHILDTAESFMDVGEREVKKVPLLRGKSIFNLFFEPSTRTRTTFEIAAKRLSADVVNLNIAT--SSQTKGEAILDTVDNLSAMHADMFIVRHSQSGAAHFIARHVAPHISVVNAGDGRHAHPTQGLLDMFTIRRFKGEFHNLTVAIVGDVLHSRVARSQIHALTTLGVPEVRVIGP 199          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_PSEU2 (Aspartate carbamoyltransferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=pyrB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.010e-21
Identity = 63/174 (36.21%), Postives = 96/174 (55.17%), Query Frame = 3
Query:   96 QLDDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGS-QILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYS-DIIVMRHFESGAARRAATTAV--IPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRS 605
            QL   +      R++L  I + A    ++   +     +L+G  +  +F+E STRTR +FE A +RL  +V+T   +   S  +KGETL DT+R +E  + D+ V+RH +SGAA   A      + +IN GDG   HPTQ +LD+ TI R  G  + + V +VGD+ + R  RS
Sbjct:   17 QLRHFLSLDGLPRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVITLNVST--SSTSKGETLFDTLRNLEAMAADMFVVRHADSGAAHFIAEHVCPDVAIINGGDGRHAHPTQGMLDMLTIRRHKGGFENLSVAIVGDILHSRVARS 188          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_PSESM (Aspartate carbamoyltransferase OS=Pseudomonas syringae pv. tomato GN=pyrB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.010e-21
Identity = 63/174 (36.21%), Postives = 96/174 (55.17%), Query Frame = 3
Query:   96 QLDDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGS-QILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYS-DIIVMRHFESGAARRAATTAV--IPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRS 605
            QL   +      R++L  I + A    ++   +     +L+G  +  +F+E STRTR +FE A +RL  +V+T   +   S  +KGETL DT+R +E  + D+ V+RH +SGAA   A      + +IN GDG   HPTQ +LD+ TI R  G  + + V +VGD+ + R  RS
Sbjct:   17 QLRHFLSLDGLPRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVITLNVST--SSTSKGETLFDTLRNLEAMAADMFVVRHADSGAAHFIAEHVCPDVAIINGGDGRHAHPTQGMLDMLTIRRHKGGFENLSVAIVGDILHSRVARS 188          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_PSE14 (Aspartate carbamoyltransferase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=pyrB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.010e-21
Identity = 63/174 (36.21%), Postives = 96/174 (55.17%), Query Frame = 3
Query:   96 QLDDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGS-QILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYS-DIIVMRHFESGAARRAATTAV--IPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRS 605
            QL   +      R++L  I + A    ++   +     +L+G  +  +F+E STRTR +FE A +RL  +V+T   +   S  +KGETL DT+R +E  + D+ V+RH +SGAA   A      + +IN GDG   HPTQ +LD+ TI R  G  + + V +VGD+ + R  RS
Sbjct:   17 QLRHFLSLDGLPRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVITLNVST--SSTSKGETLFDTLRNLEAMAADMFVVRHADSGAAHFIAEHVCPDVAIINGGDGRHAHPTQGMLDMLTIRRHKGGFENLSVAIVGDILHSRVARS 188          
The following BLAST results are available for this feature:
BLAST of FC931139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PYRB_PSEAB5.923e-2236.78Aspartate carbamoyltransferase OS=Pseudomonas aeru... [more]
PYRB_PSEA85.923e-2236.78Aspartate carbamoyltransferase OS=Pseudomonas aeru... [more]
PYRB_PSEA75.923e-2236.78Aspartate carbamoyltransferase OS=Pseudomonas aeru... [more]
PYRB_OCEIH5.923e-2236.79Aspartate carbamoyltransferase OS=Oceanobacillus i... [more]
PYRB_MYCS25.923e-2237.31Aspartate carbamoyltransferase OS=Mycobacterium sm... [more]
PYRB_RHOSR7.736e-2238.10Aspartate carbamoyltransferase OS=Rhodococcus sp. ... [more]
PYRB_THIDA1.010e-2136.67Aspartate carbamoyltransferase OS=Thiobacillus den... [more]
PYRB_PSEU21.010e-2136.21Aspartate carbamoyltransferase OS=Pseudomonas syri... [more]
PYRB_PSESM1.010e-2136.21Aspartate carbamoyltransferase OS=Pseudomonas syri... [more]
PYRB_PSE141.010e-2136.21Aspartate carbamoyltransferase OS=Pseudomonas syri... [more]

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Properties
Property NameValue
Genbank descriptionC34101H07EF PostHarvP1 Citrus clementina cDNA clone C34101H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931139 ID=FC931139; Name=FC931139; organism=Citrus clementina; type=EST; length=685bp
GGAAGCAGACCCAGCAGTTGCCCTCAAGGAATTCAATCCAGTGCTGGGCA
ATAGAAACTCAAAGTACCCCCTCATTTACCATCGGGAAGAAGTTTCAACT
TGATGACGTGATTGAAGCACAACAGTTTGATAGAGACATTCTTAATGCTA
TATTTGAAGTTGCGCGTGAAATGGAGAAGATAGAAAAGAATTCACCTGGA
AGCCAAATTCTTAAAGGTTACCTAATGGCTACTCTGTTTTATGAGCCCTC
TACTAGAACTAGGCTTTCATTTGAGTCTGCTATGAAGCGGTTAGGTGGGG
AAGTTTTGACTACAGAAAATGCTAGGGAATTTTCATTTGCAGCAAAGGGG
GAGACACTGGAAGACACTATAAGGACTGTTGAGGGGTACTCTGATATAAT
AGTTATGCGGCATTTTGAAAGCGGAGCTGCCAGAAGAGCTGCAACAACAG
CTGTCATTCCTGTCATAAATGCTGGAGATGGTCCTGGACAGCATCCAACT
CAGGCTCTTTTAGATGTCTATACTATTGAAAGAGAGATAGGCAAGCTGGA
TGGCATTAAAGTTGGGCTTGTGGGAGATCTAGCTAATGGAAGAACAGTCC
GCTCGCTTGCTTACTTGCTTGCCAAATACCAAGATGTGAAGATCTACTTT
GTCTCTCCTGGTGTAGTAAAATGAAGGATGATATC
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