FC931139

Overview
NameFC931139
Unique NameFC931139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYR1_HUMAN (CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 2.828e-40
Identity = 86/184 (46.74%), Postives = 125/184 (67.93%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            ++  QQF +D ++ +F VA  +  + +      ILKG +MA++FYE STRT  SF +AM RLGG VL+   A   S   KGE+L D+++T+  Y+D++V+RH + GA   AA     PVINAGDG G+HPTQALLD++TI  E+G ++G+ + +VGDL +GRTV SLA LL +Y+ V + +V+P
Sbjct: 1926 ILSVQQFTKDQMSHLFNVAHTLRMMVQKERSLDILKGKVMASMFYEVSTRTSSSFAAAMARLGGAVLSFSEAT--SSVQKGESLADSVQTMSCYADVVVLRHPQPGAVELAAKHCRRPVINAGDGVGEHPTQALLDIFTIREELGTVNGMTITMVGDLKHGRTVHSLACLLTQYR-VSLRYVAP 2106          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_VIBFM (Aspartate carbamoyltransferase OS=Vibrio fischeri (strain MJ11) GN=pyrB PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.299e-40
Identity = 88/188 (46.81%), Postives = 121/188 (64.36%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAV-IPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVV 668
            +I   +  R  L  I E A +++K     P   +LK  ++A+ F+E STRTRLSFE+A++RLGG V+  + A   S A KGETL D+++ +  Y+D  VMRH + GAAR A+  +   PVINAGDG  QHPTQ LLD+YTI    G+LD + V  VGDL  GRTV SL   LAK++ +K +F++P V+
Sbjct:   10 IISIPELSRQELELIVETAGKIKK----EPQPDLLKNKIVASCFFEASTRTRLSFETAIQRLGGSVIGFDTAGNTSLAQKGETLADSVQIITSYADAYVMRHPQEGAARLASEFSNGTPVINAGDGANQHPTQTLLDLYTIYETQGRLDNLNVAFVGDLKYGRTVHSLTQALAKFEGIKFFFIAPEVL 193          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_VIBF1 (Aspartate carbamoyltransferase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=pyrB PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.299e-40
Identity = 88/188 (46.81%), Postives = 121/188 (64.36%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAV-IPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVV 668
            +I   +  R  L  I E A +++K     P   +LK  ++A+ F+E STRTRLSFE+A++RLGG V+  + A   S A KGETL D+++ +  Y+D  VMRH + GAAR A+  +   PVINAGDG  QHPTQ LLD+YTI    G+LD + V  VGDL  GRTV SL   LAK++ +K +F++P V+
Sbjct:   10 IISIPELSRQELELIVETAGKIKK----EPQPDLLKNKIVASCFFEASTRTRLSFETAIQRLGGSVIGFDTAGNTSLAQKGETLADSVQIITSYADAYVMRHPQEGAARLASEFSNGTPVINAGDGANQHPTQTLLDLYTIYETQGRLDNLNVAFVGDLKYGRTVHSLTQALAKFEGIKFFFIAPEVL 193          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_PROMH (Aspartate carbamoyltransferase OS=Proteus mirabilis (strain HI4320) GN=pyrB PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.227e-40
Identity = 89/188 (47.34%), Postives = 122/188 (64.89%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAV-IPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVV 668
            +I     +RD L ++  VA ++    K  P SQ+LK  ++A+ F+E STRTRLSFE+A+ RLG  V+   +    S   KGETL DTI  +  Y+D IV+RH + GAAR A+  A  IPVINAGDG  QHP+Q LLD++TI+   G+LD + + +VGDL  GRTV SLA  LAK+    +YF++P V+
Sbjct:   10 IISINDLNRDDLESVLHVADKL----KQHPNSQLLKDKVIASCFFEASTRTRLSFETAIHRLGASVVGFADGSNTSLGKKGETLADTISVLRTYADAIVIRHPQEGAARLASEFAGDIPVINAGDGANQHPSQTLLDLFTIKETQGRLDNLNIAMVGDLKYGRTVHSLAQALAKFTGNHLYFIAPKVL 193          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYR1_MESAU (CAD protein OS=Mesocricetus auratus GN=CAD PE=1 SV=4)

HSP 1 Score: 163.696 bits (413), Expect = 8.227e-40
Identity = 85/184 (46.20%), Postives = 125/184 (67.93%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            ++  +QF +D ++ +F VA  +  + +      ILKG +MA++FYE STRT  SF +AM RLGG VL+   A   S   KGE+L D+++T+  Y+D++V+RH + GA   AA     PVINAGDG G+HPTQALLD++TI  E+G ++G+ + +VGDL +GRTV SLA LL +Y+ V + +V+P
Sbjct: 1926 ILSVKQFTKDQMSHLFNVAHTLRMMVQKERSLDILKGKVMASMFYEVSTRTSSSFAAAMARLGGAVLSFSEAT--SSVQKGESLADSVQTMSCYADVVVLRHPQPGAVELAAKHCRRPVINAGDGVGEHPTQALLDIFTIREELGTVNGMTITMVGDLKHGRTVHSLACLLTQYR-VSLRYVAP 2106          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_SACD2 (Aspartate carbamoyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=pyrB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.074e-39
Identity = 84/194 (43.30%), Postives = 123/194 (63.40%), Query Frame = 3
Query:   90 KFQLDDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREI----GKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            KF    ++  +QF+R  +  IF VA  ME        +++L+G ++  +F+EPSTRTR+SF  A   LGGEV  T   +  S  AKGE+L DT R + GYSD+I MRH + G+    A  + +PVIN GDG  +HP+QALLD+YTI++E+      LDG+++ ++GDL +GRTV SL  LL  + ++++  VSP
Sbjct:    2 KFSGSHILSVEQFERADIERIFAVADSMEPYALRQKVTRVLEGAILGNMFFEPSTRTRVSFGCAFNLLGGEVRETTGFKS-SAIAKGESLYDTARVLSGYSDVICMRHPQEGSVAEFAQASRVPVINGGDGANEHPSQALLDLYTIQKELRDKGRSLDGLRIAMIGDLKHGRTVHSLMRLLGLFANLQVVLVSP 194          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_METLZ (Aspartate carbamoyltransferase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=pyrB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.074e-39
Identity = 83/150 (55.33%), Postives = 110/150 (73.33%), Query Frame = 3
Query:  210 LKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            L+G ++A LF+EPSTRTR+SF +AM RLGG++L   +    S   KGETL DTIR + GY D IV+RH + GAAR A+  A +PVIN GDG GQHP+Q LLD++TI RE  +++ I VGL GDL  GRTV SLA+ LAKY +V+++ ++P
Sbjct:   39 LEGKILAVLFFEPSTRTRMSFSAAMMRLGGKILNLGSVEATSIT-KGETLSDTIRVISGYCDAIVLRHPKEGAARLASEVASVPVINGGDGAGQHPSQTLLDLFTI-RESMRIENIDVGLQGDLRYGRTVHSLAFALAKYNNVRLHTIAP 186          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_METHJ (Aspartate carbamoyltransferase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pyrB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.074e-39
Identity = 90/187 (48.13%), Postives = 121/187 (64.71%), Query Frame = 3
Query:   99 LDDVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            ++ +I     DRD ++ +   A E   +     G + LKG ++  LF+EPSTRTR+SFESAM RLGG  +      E S  AKGETL DTIR V GY+D IV+RH + GAAR A+  + IP++N GDG GQHP+Q L+D+YTI R+   LD I +GL+GDL  GRT  SLAY L  Y + +I+ ++P
Sbjct:    1 MNHIISIHDLDRDQIDRLLARAGE---VTAEFAGKEPLKGKILGLLFFEPSTRTRMSFESAMLRLGGSCMNLGGV-EVSSMAKGETLADTIRVVSGYADAIVLRHPKVGAARLASEFSEIPILNGGDGAGQHPSQTLIDLYTI-RQSMSLDNIHIGLIGDLMYGRTTHSLAYALTHY-NARIHTIAP 181          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_CLONN (Aspartate carbamoyltransferase OS=Clostridium novyi (strain NT) GN=pyrB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.074e-39
Identity = 90/189 (47.62%), Postives = 124/189 (65.61%), Query Frame = 3
Query:  105 DVIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAATTAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPGVVK 671
            ++I+   F  + L  +F +A ++  IE     S++ +G L+ATLFYEPSTRTRLSFE+AM RLGG+VL   +A   S  +KGE+LEDTI+ V GY+D+I +RH + GAA  A+  + +P+INAGDG  QHPTQ L D+ TI R  G      +GL GDL  GRTV SL   L++Y++ K   +SP  +K
Sbjct:    6 NLIDPMDFSVEELEEVFSLADKI--IENPKKYSKVCEGKLLATLFYEPSTRTRLSFEAAMLRLGGKVLGFSDAN-CSSVSKGESLEDTIKIVSGYTDVIAIRHPKEGAAEVASKHSYVPIINAGDGGHQHPTQTLTDLLTIRRIKGDFSNHTIGLCGDLKFGRTVHSLVKALSRYENNKFILISPKELK 191          
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_VIBVU (Aspartate carbamoyltransferase OS=Vibrio vulnificus GN=pyrB PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.403e-39
Identity = 83/185 (44.86%), Postives = 121/185 (65.41%), Query Frame = 3
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I   +  R  L  I + A ++    K  P  +++K  ++A+ F+EPSTRTRLSFE+A++R+GG+V+  ++    S A KGETL D+++ +  Y D  VMRH + GAAR A+  +  +PVINAGDG  QHPTQ LLD++TI    G+LD + V  VGDL  GRTV SL   LAK+ +++ +FV+P
Sbjct:   10 IISIPELSRAELELIVKTAGQL----KAEPNPELIKNKVVASCFFEPSTRTRLSFETAIQRIGGDVIGFDDGGNTSLAKKGETLSDSVQVISNYVDAFVMRHPQEGAARLASEFSNGVPVINAGDGANQHPTQTLLDLFTISETQGRLDNLNVAFVGDLKYGRTVHSLTQALAKFNNIRFFFVAP 190          
The following BLAST results are available for this feature:
BLAST of FC931139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PYR1_HUMAN2.828e-4046.74CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3[more]
PYRB_VIBFM6.299e-4046.81Aspartate carbamoyltransferase OS=Vibrio fischeri ... [more]
PYRB_VIBF16.299e-4046.81Aspartate carbamoyltransferase OS=Vibrio fischeri ... [more]
PYRB_PROMH8.227e-4047.34Aspartate carbamoyltransferase OS=Proteus mirabili... [more]
PYR1_MESAU8.227e-4046.20CAD protein OS=Mesocricetus auratus GN=CAD PE=1 SV... [more]
PYRB_SACD21.074e-3943.30Aspartate carbamoyltransferase OS=Saccharophagus d... [more]
PYRB_METLZ1.074e-3955.33Aspartate carbamoyltransferase OS=Methanocorpuscul... [more]
PYRB_METHJ1.074e-3948.13Aspartate carbamoyltransferase OS=Methanospirillum... [more]
PYRB_CLONN1.074e-3947.62Aspartate carbamoyltransferase OS=Clostridium novy... [more]
PYRB_VIBVU1.403e-3944.86Aspartate carbamoyltransferase OS=Vibrio vulnificu... [more]

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Properties
Property NameValue
Genbank descriptionC34101H07EF PostHarvP1 Citrus clementina cDNA clone C34101H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931139 ID=FC931139; Name=FC931139; organism=Citrus clementina; type=EST; length=685bp
GGAAGCAGACCCAGCAGTTGCCCTCAAGGAATTCAATCCAGTGCTGGGCA
ATAGAAACTCAAAGTACCCCCTCATTTACCATCGGGAAGAAGTTTCAACT
TGATGACGTGATTGAAGCACAACAGTTTGATAGAGACATTCTTAATGCTA
TATTTGAAGTTGCGCGTGAAATGGAGAAGATAGAAAAGAATTCACCTGGA
AGCCAAATTCTTAAAGGTTACCTAATGGCTACTCTGTTTTATGAGCCCTC
TACTAGAACTAGGCTTTCATTTGAGTCTGCTATGAAGCGGTTAGGTGGGG
AAGTTTTGACTACAGAAAATGCTAGGGAATTTTCATTTGCAGCAAAGGGG
GAGACACTGGAAGACACTATAAGGACTGTTGAGGGGTACTCTGATATAAT
AGTTATGCGGCATTTTGAAAGCGGAGCTGCCAGAAGAGCTGCAACAACAG
CTGTCATTCCTGTCATAAATGCTGGAGATGGTCCTGGACAGCATCCAACT
CAGGCTCTTTTAGATGTCTATACTATTGAAAGAGAGATAGGCAAGCTGGA
TGGCATTAAAGTTGGGCTTGTGGGAGATCTAGCTAATGGAAGAACAGTCC
GCTCGCTTGCTTACTTGCTTGCCAAATACCAAGATGTGAAGATCTACTTT
GTCTCTCCTGGTGTAGTAAAATGAAGGATGATATC
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