FC931139

Overview
NameFC931139
Unique NameFC931139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_SALCH (Aspartate carbamoyltransferase OS=Salmonella choleraesuis GN=pyrB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38
Identity = 84/185 (45.41%), Postives = 116/185 (62.70%), Query Frame = 3 
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I      RD LN +   A ++    K +P  ++LK  ++A+ F+E STRTRLSFE++M RLG  V+   ++   S   KGETL DTI  +  Y D IVMRH + GAAR A   +  +PV+NAGDG  QHPTQ LLD++TI+   G+LD + + +VGDL  GRTV SL   LAK+   + YF++P
Sbjct:   10 IISINDLSRDDLNLVLATAAKL----KANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGQVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHIAMVGDLKYGRTVHSLTQALAKFSGNRFYFIAP 190
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_SALA4 (Aspartate carbamoyltransferase OS=Salmonella agona (strain SL483) GN=pyrB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38
Identity = 84/185 (45.41%), Postives = 116/185 (62.70%), Query Frame = 3 
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I      RD LN +   A ++    K +P  ++LK  ++A+ F+E STRTRLSFE++M RLG  V+   ++   S   KGETL DTI  +  Y D IVMRH + GAAR A   +  +PV+NAGDG  QHPTQ LLD++TI+   G+LD + + +VGDL  GRTV SL   LAK+   + YF++P
Sbjct:   10 IISINDLSRDDLNLVLATAAKL----KANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGQVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHIAMVGDLKYGRTVHSLTQALAKFSGNRFYFIAP 190
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_ECOUT (Aspartate carbamoyltransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=pyrB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38
Identity = 85/185 (45.95%), Postives = 116/185 (62.70%), Query Frame = 3 
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I      RD LN +   A ++    K +P  ++LK  ++A+ F+E STRTRLSFE++M RLG  V+   ++   S   KGETL DTI  +  Y D IVMRH + GAAR A   +  +PV+NAGDG  QHPTQ LLD++TI+   G+LD + V +VGDL  GRTV SL   LAK+   + YF++P
Sbjct:   10 IISINDLSRDDLNLVLATAAKL----KANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAP 190
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_ECOSM (Aspartate carbamoyltransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=pyrB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38
Identity = 85/185 (45.95%), Postives = 116/185 (62.70%), Query Frame = 3 
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I      RD LN +   A ++    K +P  ++LK  ++A+ F+E STRTRLSFE++M RLG  V+   ++   S   KGETL DTI  +  Y D IVMRH + GAAR A   +  +PV+NAGDG  QHPTQ LLD++TI+   G+LD + V +VGDL  GRTV SL   LAK+   + YF++P
Sbjct:   10 IISINDLSRDDLNLVLATAAKL----KANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAP 190
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_ECOSE (Aspartate carbamoyltransferase OS=Escherichia coli (strain SE11) GN=pyrB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38
Identity = 85/185 (45.95%), Postives = 116/185 (62.70%), Query Frame = 3 
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I      RD LN +   A ++    K +P  ++LK  ++A+ F+E STRTRLSFE++M RLG  V+   ++   S   KGETL DTI  +  Y D IVMRH + GAAR A   +  +PV+NAGDG  QHPTQ LLD++TI+   G+LD + V +VGDL  GRTV SL   LAK+   + YF++P
Sbjct:   10 IISINDLSRDDLNLVLATAAKL----KANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAP 190
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_ECOLU (Aspartate carbamoyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=pyrB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38
Identity = 85/185 (45.95%), Postives = 116/185 (62.70%), Query Frame = 3 
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I      RD LN +   A ++    K +P  ++LK  ++A+ F+E STRTRLSFE++M RLG  V+   ++   S   KGETL DTI  +  Y D IVMRH + GAAR A   +  +PV+NAGDG  QHPTQ LLD++TI+   G+LD + V +VGDL  GRTV SL   LAK+   + YF++P
Sbjct:   10 IISINDLSRDDLNLVLATAAKL----KANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAP 190
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_ECOLI (Aspartate carbamoyltransferase catalytic chain OS=Escherichia coli (strain K12) GN=pyrB PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38
Identity = 85/185 (45.95%), Postives = 116/185 (62.70%), Query Frame = 3 
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I      RD LN +   A ++    K +P  ++LK  ++A+ F+E STRTRLSFE++M RLG  V+   ++   S   KGETL DTI  +  Y D IVMRH + GAAR A   +  +PV+NAGDG  QHPTQ LLD++TI+   G+LD + V +VGDL  GRTV SL   LAK+   + YF++P
Sbjct:   10 IISINDLSRDDLNLVLATAAKL----KANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAP 190
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_ECOLC (Aspartate carbamoyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=pyrB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38
Identity = 85/185 (45.95%), Postives = 116/185 (62.70%), Query Frame = 3 
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I      RD LN +   A ++    K +P  ++LK  ++A+ F+E STRTRLSFE++M RLG  V+   ++   S   KGETL DTI  +  Y D IVMRH + GAAR A   +  +PV+NAGDG  QHPTQ LLD++TI+   G+LD + V +VGDL  GRTV SL   LAK+   + YF++P
Sbjct:   10 IISINDLSRDDLNLVLATAAKL----KANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAP 190
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_ECOL6 (Aspartate carbamoyltransferase catalytic chain OS=Escherichia coli O6 GN=pyrB PE=3 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38
Identity = 85/185 (45.95%), Postives = 116/185 (62.70%), Query Frame = 3 
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I      RD LN +   A ++    K +P  ++LK  ++A+ F+E STRTRLSFE++M RLG  V+   ++   S   KGETL DTI  +  Y D IVMRH + GAAR A   +  +PV+NAGDG  QHPTQ LLD++TI+   G+LD + V +VGDL  GRTV SL   LAK+   + YF++P
Sbjct:   10 IISINDLSRDDLNLVLATAAKL----KANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAP 190
[Close]
BLAST of FC931139 vs. ExPASy Swiss-Prot
Match: PYRB_ECOL5 (Aspartate carbamoyltransferase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=pyrB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38
Identity = 85/185 (45.95%), Postives = 116/185 (62.70%), Query Frame = 3 
Query:  108 VIEAQQFDRDILNAIFEVAREMEKIEKNSPGSQILKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSFAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAT-TAVIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSP 659
            +I      RD LN +   A ++    K +P  ++LK  ++A+ F+E STRTRLSFE++M RLG  V+   ++   S   KGETL DTI  +  Y D IVMRH + GAAR A   +  +PV+NAGDG  QHPTQ LLD++TI+   G+LD + V +VGDL  GRTV SL   LAK+   + YF++P
Sbjct:   10 IISINDLSRDDLNLVLATAAKL----KANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAP 190
The following BLAST results are available for this feature:
BLAST of FC931139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PYRB_SALCH1.552e-3845.41Aspartate carbamoyltransferase OS=Salmonella chole... [more]
PYRB_SALA41.552e-3845.41Aspartate carbamoyltransferase OS=Salmonella agona... [more]
PYRB_ECOUT1.552e-3845.95Aspartate carbamoyltransferase OS=Escherichia coli... [more]
PYRB_ECOSM1.552e-3845.95Aspartate carbamoyltransferase OS=Escherichia coli... [more]
PYRB_ECOSE1.552e-3845.95Aspartate carbamoyltransferase OS=Escherichia coli... [more]
PYRB_ECOLU1.552e-3845.95Aspartate carbamoyltransferase OS=Escherichia coli... [more]
PYRB_ECOLI1.552e-3845.95Aspartate carbamoyltransferase catalytic chain OS=... [more]
PYRB_ECOLC1.552e-3845.95Aspartate carbamoyltransferase OS=Escherichia coli... [more]
PYRB_ECOL61.552e-3845.95Aspartate carbamoyltransferase catalytic chain OS=... [more]
PYRB_ECOL51.552e-3845.95Aspartate carbamoyltransferase OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionC34101H07EF PostHarvP1 Citrus clementina cDNA clone C34101H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931139 ID=FC931139; Name=FC931139; organism=Citrus clementina; type=EST; length=685bp
GGAAGCAGACCCAGCAGTTGCCCTCAAGGAATTCAATCCAGTGCTGGGCA
ATAGAAACTCAAAGTACCCCCTCATTTACCATCGGGAAGAAGTTTCAACT
TGATGACGTGATTGAAGCACAACAGTTTGATAGAGACATTCTTAATGCTA
TATTTGAAGTTGCGCGTGAAATGGAGAAGATAGAAAAGAATTCACCTGGA
AGCCAAATTCTTAAAGGTTACCTAATGGCTACTCTGTTTTATGAGCCCTC
TACTAGAACTAGGCTTTCATTTGAGTCTGCTATGAAGCGGTTAGGTGGGG
AAGTTTTGACTACAGAAAATGCTAGGGAATTTTCATTTGCAGCAAAGGGG
GAGACACTGGAAGACACTATAAGGACTGTTGAGGGGTACTCTGATATAAT
AGTTATGCGGCATTTTGAAAGCGGAGCTGCCAGAAGAGCTGCAACAACAG
CTGTCATTCCTGTCATAAATGCTGGAGATGGTCCTGGACAGCATCCAACT
CAGGCTCTTTTAGATGTCTATACTATTGAAAGAGAGATAGGCAAGCTGGA
TGGCATTAAAGTTGGGCTTGTGGGAGATCTAGCTAATGGAAGAACAGTCC
GCTCGCTTGCTTACTTGCTTGCCAAATACCAAGATGTGAAGATCTACTTT
GTCTCTCCTGGTGTAGTAAAATGAAGGATGATATC
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