FC931140

Overview
NameFC931140
Unique NameFC931140
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12734 contig Ccv1_Contig12734:92..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: PKS24_DICDI (Probable polyketide synthase 24 OS=Dictyostelium discoideum GN=pks24 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 61/217 (28.11%), Postives = 101/217 (46.54%), Query Frame = 3
Query:  102 EVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVG-KNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKC--QGVRVFVTAGSEEKLAVCKDLGADVCIN-YKTED--FVARVKE---ETGGK--GVDVILDCMGASYFQRNLDSLNIDGRL 719
            E+ +KV+AT +N  D L+        +      G + SG +  VG K+   +KVGDQV  +      +  + + +      PS ++   AA+ P V  T    ++   +L   ES L+H GS G+G   +++ K       +FVT GSEEK     +   D+    Y T D  +  ++K    E G +  GVD+I++ + + +   N   LN  GR+
Sbjct: 1726 EIEVKVKATGINYKDYLKYNEMIKVNEAGI---GFDFSGVVSRVGIKSSKEFKVGDQVYGIAYETS-SSHIIIDSLLACHKPSKITHVQAASIPAVYSTSLYCLYDVGNLRDEESVLIHSGSGGVGLSGLEILKSNNHSSPIFVTVGSEEKKQYLINTYGDLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDTNFKCLNPKGRI 1938          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: DHSO_BACSU (Sorbitol dehydrogenase OS=Bacillus subtilis GN=gutB PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 66/257 (25.68%), Postives = 109/257 (42.41%), Query Frame = 3
Query:   60 LQLQEVEDPQIKDDEVLIKVEATALNRAD----TLQRKGSYPPPKGASPYP-GLECSGTILSVGKNVSRWKVGDQVCALLG----------------------------GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEE-KLAVCKDLGADVCINYKTEDFVARVKEETGGKGVDVILDCMG-ASYFQRNLDSLNIDGRLFI 725
            ++++ +  P I  DEVLIKV A  +  +D    T  R G+Y   K   P+  G EC+G I +VG +V ++KVGD+V    G                             G + + + +    V  +P  +S ++AA     +  + +     + L PG +  +  G   +G  A+   K  G    +    E  +L   K +GA   IN + +D +  +K  T  +GVDV  +  G  +  Q  L S+   G+L I
Sbjct:   20 IKIETLPVPDINHDEVLIKVMAVGICGSDLHYYTNGRIGNYVVEK---PFILGHECAGEIAAVGSSVDQFKVGDRVAVEPGVTCGRCEACKEGRYNLCPDVQFLATPPVDGAFVQYIKMRQDFVFLIPDSLSYEEAALIEPFSVGIHAAA--RTKLQPGSTIAIM-GMGPVGLMAVAAAKAFGAGTIIVTDLEPLRLEAAKKMGATHIINIREQDALEEIKTITNDRGVDVAWETAGNPAALQSALASVRRGGKLAI 270          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: MECR_HUMAN (Trans-2-enoyl-CoA reductase, mitochondrial OS=Homo sapiens GN=MECR PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 62/226 (27.43%), Postives = 107/226 (47.35%), Query Frame = 3
Query:   18 MKAIVITQPGSP-EVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVL-PVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSE---EKLA-VCKDLGADVCINYKTEDFVARVKEETGGKGVD---VILDCMG 668
            ++A+V    G P +V++L+ +E   ++  +V +K+ A  +N +D    +G+Y          G E    +++VG NV+  K GD V     G G     AV + + L  VPS + L+ AA      CT +  +     L PG+S + +  +SG+G   IQ+    G+R           +KL+   K LGA+  I   TE+ + R + +   K +    + L+C+G
Sbjct:   43 VRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVI---TEEELRRPEMKNFFKDMPQPRLALNCVG 265          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: RT4I1_DICDI (Reticulon-4-interacting protein 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=rtn4ip1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 50/176 (28.41%), Postives = 87/176 (49.43%), Query Frame = 3
Query:   18 MKAIVITQPGSPEVLQLQEVED----PQIKDDEVLIKVEATALNRADTLQRKG---SYPPPKGASPYP-GLECSGTILSVGKNVSRWKVGDQVCAL---LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVF----MTSHLSPGESFLVHGGSSGIGTFAIQMGK 500
            MK I++   G  E L L E +     P+    +VLIK+ +T++N  D + RKG   S    K   P   G ECSG I+ +G +V  +++GDQV +       G + E + V   ++   P  ++ + +A+ P  + T W+ ++        ++     LV+GG+  +G F +Q+ K
Sbjct:    1 MKGILLN--GYGESLDLLEYKTDLPVPKPIKSQVLIKIHSTSINPLDNVMRKGYASSIVDLKLKLPIILGRECSGEIVEIGDSVWDYEIGDQVWSASPPFSMGSHCEYITVDESEISLKPKNLTHQQSASIPFASLTAWNAIYNVLPTNKKITTNTKILVNGGNGSVGFFILQLLK 174          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: ADH_STAAW (Alcohol dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=adh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 67/266 (25.19%), Postives = 115/266 (43.23%), Query Frame = 3
Query:   18 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQV----------------------CALLGGGGY------AEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWST--VFMTSHLSPGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTAGSEEKLAVCKDLGADVCINYKTEDFVARVKEETGGKGVD-VILDCMGASYFQRNLDSLNIDGRL 719
            M+A V+T+      + +++ +   +K  E L++ E   +   D   +   +    G +   G E  G ++ V ++V   K+GD+V                      C  +   GY      AE+V V A   + VP  +   D AA   + C   +T      S++ PG+   V G   G+G  A+Q  K   G ++     +++KLA  K+LGAD  IN K  D VA V + T  KG+D  ++  +  + F + +D +    R+
Sbjct:    1 MRAAVVTKDHK---VSIEDKKLRALKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKL---DPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFG-IGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARV 257          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: ADH_STAAS (Alcohol dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=adh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 67/266 (25.19%), Postives = 115/266 (43.23%), Query Frame = 3
Query:   18 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQV----------------------CALLGGGGY------AEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWST--VFMTSHLSPGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTAGSEEKLAVCKDLGADVCINYKTEDFVARVKEETGGKGVD-VILDCMGASYFQRNLDSLNIDGRL 719
            M+A V+T+      + +++ +   +K  E L++ E   +   D   +   +    G +   G E  G ++ V ++V   K+GD+V                      C  +   GY      AE+V V A   + VP  +   D AA   + C   +T      S++ PG+   V G   G+G  A+Q  K   G ++     +++KLA  K+LGAD  IN K  D VA V + T  KG+D  ++  +  + F + +D +    R+
Sbjct:    1 MRAAVVTKDHK---VSIEDKKLRALKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKL---DPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFG-IGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARV 257          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: ADH_STAAR (Alcohol dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=adh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 67/266 (25.19%), Postives = 115/266 (43.23%), Query Frame = 3
Query:   18 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQV----------------------CALLGGGGY------AEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWST--VFMTSHLSPGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTAGSEEKLAVCKDLGADVCINYKTEDFVARVKEETGGKGVD-VILDCMGASYFQRNLDSLNIDGRL 719
            M+A V+T+      + +++ +   +K  E L++ E   +   D   +   +    G +   G E  G ++ V ++V   K+GD+V                      C  +   GY      AE+V V A   + VP  +   D AA   + C   +T      S++ PG+   V G   G+G  A+Q  K   G ++     +++KLA  K+LGAD  IN K  D VA V + T  KG+D  ++  +  + F + +D +    R+
Sbjct:    1 MRAAVVTKDHK---VSIEDKKLRALKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKL---DPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFG-IGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARV 257          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: ADH_STAAN (Alcohol dehydrogenase OS=Staphylococcus aureus (strain N315) GN=adh PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 67/266 (25.19%), Postives = 115/266 (43.23%), Query Frame = 3
Query:   18 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQV----------------------CALLGGGGY------AEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWST--VFMTSHLSPGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTAGSEEKLAVCKDLGADVCINYKTEDFVARVKEETGGKGVD-VILDCMGASYFQRNLDSLNIDGRL 719
            M+A V+T+      + +++ +   +K  E L++ E   +   D   +   +    G +   G E  G ++ V ++V   K+GD+V                      C  +   GY      AE+V V A   + VP  +   D AA   + C   +T      S++ PG+   V G   G+G  A+Q  K   G ++     +++KLA  K+LGAD  IN K  D VA V + T  KG+D  ++  +  + F + +D +    R+
Sbjct:    1 MRAAVVTKDHK---VSIEDKKLRALKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKL---DPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFG-IGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARV 257          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: ADH_STAAM (Alcohol dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=adh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 67/266 (25.19%), Postives = 115/266 (43.23%), Query Frame = 3
Query:   18 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQV----------------------CALLGGGGY------AEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWST--VFMTSHLSPGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTAGSEEKLAVCKDLGADVCINYKTEDFVARVKEETGGKGVD-VILDCMGASYFQRNLDSLNIDGRL 719
            M+A V+T+      + +++ +   +K  E L++ E   +   D   +   +    G +   G E  G ++ V ++V   K+GD+V                      C  +   GY      AE+V V A   + VP  +   D AA   + C   +T      S++ PG+   V G   G+G  A+Q  K   G ++     +++KLA  K+LGAD  IN K  D VA V + T  KG+D  ++  +  + F + +D +    R+
Sbjct:    1 MRAAVVTKDHK---VSIEDKKLRALKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKL---DPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFG-IGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARV 257          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: ADH_STAAC (Alcohol dehydrogenase OS=Staphylococcus aureus (strain COL) GN=adh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 67/266 (25.19%), Postives = 115/266 (43.23%), Query Frame = 3
Query:   18 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQV----------------------CALLGGGGY------AEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWST--VFMTSHLSPGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTAGSEEKLAVCKDLGADVCINYKTEDFVARVKEETGGKGVD-VILDCMGASYFQRNLDSLNIDGRL 719
            M+A V+T+      + +++ +   +K  E L++ E   +   D   +   +    G +   G E  G ++ V ++V   K+GD+V                      C  +   GY      AE+V V A   + VP  +   D AA   + C   +T      S++ PG+   V G   G+G  A+Q  K   G ++     +++KLA  K+LGAD  IN K  D VA V + T  KG+D  ++  +  + F + +D +    R+
Sbjct:    1 MRAAVVTKDHK---VSIEDKKLRALKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKL---DPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFG-IGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARV 257          
The following BLAST results are available for this feature:
BLAST of FC931140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
PKS24_DICDI3.996e-1128.11Probable polyketide synthase 24 OS=Dictyostelium d... [more]
DHSO_BACSU3.996e-1125.68Sorbitol dehydrogenase OS=Bacillus subtilis GN=gut... [more]
MECR_HUMAN5.219e-1127.43Trans-2-enoyl-CoA reductase, mitochondrial OS=Homo... [more]
RT4I1_DICDI6.816e-1128.41Reticulon-4-interacting protein 1 homolog, mitocho... [more]
ADH_STAAW8.902e-1125.19Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAS8.902e-1125.19Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAR8.902e-1125.19Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAN8.902e-1125.19Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAM8.902e-1125.19Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAC8.902e-1125.19Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]

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Properties
Property NameValue
Genbank descriptionC34101H08EF PostHarvP1 Citrus clementina cDNA clone C34101H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931140 ID=FC931140; Name=FC931140; organism=Citrus clementina; type=EST; length=726bp
GGGAAAGTGAAGGCACAATGAAGGCAATAGTGATAACTCAACCCGGTAGC
CCAGAAGTGCTGCAGTTGCAAGAAGTAGAAGACCCTCAAATCAAAGACGA
CGAAGTGTTGATCAAAGTCGAAGCTACTGCCCTGAACCGGGCCGACACTC
TTCAACGAAAAGGCTCCTACCCTCCACCCAAAGGCGCCAGCCCTTACCCG
GGTCTCGAATGTTCCGGAACCATCCTGTCCGTTGGTAAAAACGTCTCTAG
ATGGAAAGTCGGCGACCAGGTGTGTGCTCTGCTTGGTGGAGGAGGGTATG
CTGAGAAAGTGGCTGTTCCAGCTGGACAAGTTCTTCCCGTTCCATCTGGT
GTCTCACTCAAAGATGCTGCTGCGTTTCCGGAGGTGGCTTGCACTGTTTG
GTCAACGGTTTTCATGACCAGTCACCTATCCCCAGGGGAGTCATTTCTGG
TTCATGGGGGCTCTAGTGGAATTGGTACATTTGCGATTCAGATGGGAAAA
TGCCAAGGAGTGAGAGTCTTTGTTACAGCAGGAAGTGAGGAAAAGCTGGC
TGTTTGCAAGGATCTTGGTGCGGATGTGTGCATCAATTACAAGACTGAGG
ATTTTGTTGCACGAGTGAAGGAAGAAACTGGTGGTAAAGGTGTTGATGTA
ATTCTAGATTGCATGGGAGCATCCTACTTTCAGCGTAACCTCGACAGCTT
GAACATTGATGGGAGGCTTTTCATAA
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