FC931140

Overview
NameFC931140
Unique NameFC931140
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12734 contig Ccv1_Contig12734:92..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: PKS34_DICDI (Probable polyketide synthase 34 OS=Dictyostelium discoideum GN=pks34 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.200e-15
Identity = 67/238 (28.15%), Postives = 112/238 (47.06%), Query Frame = 3
Query:   87 QIKDDEVLIKVEATALNRADTLQRKG------------SYPPPKGA---SPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKC---QGVRVFVTAGSEEKLA-VCKDLGADVCINY--KTEDFVARVKE------ETGGKGVDVILDCMGASYFQRNLDSLNIDGRL 719
            ++  +EV I+V+AT +N  D L   G             Y    G    +P  G + SG I  +G NV ++KVGDQVC  +G    +  V V    +   P   S   +A+ P +  T   +++   +L   ES L+H  + GIG  ++ + K    QG  +F+T  S++K   + K  G+ +   Y  + +++V  +K       E   +GVD+IL+ + + Y   N   LN+ GR+
Sbjct: 1909 KLNSNEVEIEVKATGINYKDYLMYIGMIGSDLDIKYGKEYEIENGIGIDNPNIGNDFSGIITRLGNNVKKFKVGDQVCG-IGSKASSSHVIVDFTSIYYKPLNYSHSVSASIPSIYITSLHSIYSIGNLKSNESILIHSAAGGIGISSLDLLKSKQHQGY-IFLTVSSKDKEEYLIKKYGSLITAIYSSRNKNYVKDIKNKLMELGEVEQQGVDLILNTLSSEYMDSNFQCLNLSGRI 2144          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: ADH4_KLULA (Alcohol dehydrogenase 4, mitochondrial OS=Kluyveromyces lactis GN=ADH4 PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.200e-15
Identity = 62/236 (26.27%), Postives = 109/236 (46.19%), Query Frame = 3
Query:   15 TMKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGD--------------QVC----------ALLGG----GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGADVCINY-KTEDFVARVKEETGG 635
            T K ++  + G    L+ +++  P+ K +E+LI V+ + +   D    KG +P P       G E +G +++ G+NV  +++GD              ++C          A L G    G + +     A Q   +P G  L + A       TV+  +  T+ L PG+   + G + G+G+ A+Q  K  G+RV    G + K  + K  G +V I++ K++D VA ++E T G
Sbjct:   33 TQKGVIFYENGGK--LEYKDLPVPKPKANEILINVKYSGVCHTDLHAWKGDWPLPVKLPLVGGHEGAGIVVAKGENVKNFEIGDYAGIKWLNGSCMSCELCEQGYESNCLQADLSGYTHDGSFQQYATADAVQAAQIPKGTDLAEIAPILCAGVTVYKAL-KTADLKPGQWVAISGAAGGLGSLAVQYAKAMGLRVLGIDGGDGKEELFKQCGGEVFIDFRKSKDMVADIQEATNG 265          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: PKS25_DICDI (Probable polyketide synthase 25 OS=Dictyostelium discoideum GN=pks25 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.568e-15
Identity = 68/225 (30.22%), Postives = 113/225 (50.22%), Query Frame = 3
Query:   78 EDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVG-KNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKC--QGVRVFVTAGSEEKLA-VCKDLGADVCINYKTED--FVARVKE---ETGGK--GVDVILDCMGASYFQRNLDSLNIDGRL 719
            +D  +K  ++ ++++AT LN  D L   G     KG S   GL+ SG +  VG K+   +KVGD+V  + G    +  + + +      PS ++   AA+ P V  T   +++   +L  GES L+H GS G+G  A+++ K       +FVT GSEEK   +    G  +   Y T D  +  ++K    E G +  GVD+I++ + + +   N   LN +GR+
Sbjct: 1688 KDSILKPYDIEVEIKATGLNYKDYLVYSGLIKL-KGDSVDFGLDFSGRVSRVGIKSSKEFKVGDEVYGI-GQSTSSSHIIIDSMHACHKPSKITHVQAASIPAVYATSIHSLYNIGNLREGESILIHSGSGGVGLSALEILKSNNHSSPIFVTVGSEEKKQYLINTYGNLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDSNFKCLNPEGRI 1910          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: ADH2_PICST (Alcohol dehydrogenase 2 OS=Pichia stipitis GN=ADH2 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.568e-15
Identity = 70/266 (26.32%), Postives = 117/266 (43.98%), Query Frame = 3
Query:   15 TMKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGD--------------QVC----------ALLGG----GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGADVCINY-KTEDFVARVKEETGGKGVDVILDCMGASYFQRNLDSLNIDGRLFI 725
            T KA++    G P  L  +++  P+ K +E+LI V+ + +   D    KG +P         G E +G ++++G+NV+ W++GD              + C          A L G    G + +     A Q   +P G  L   A       TV+  +  T+ L  G+   V G + G+G+ AIQ  K  G RV    G  +K    K LGA+V +++  ++D VA V + T G    VI   +     Q+++D +   G + +
Sbjct:    6 TQKAVIFETNGGP--LLYKDIPVPKPKPNELLINVKYSGVCHTDLHAWKGDWPLDTKLPLVGGHEGAGVVVALGENVTGWEIGDYAGIKWINGSCLQCEYCVTAHESNCPDADLSGYTHDGSFQQYATADAIQAARIPKGTDLALIAPILCAGITVYKAL-KTAQLQAGQWVAVSGAAGGLGSLAIQYAKAMGYRVVGIDGGADKGEFAKSLGAEVFVDFLSSKDVVADVLKATNGGAHGVINVSVSERAMQQSVDYVRPTGTVVL 268          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: PKS5_DICDI (Probable polyketide synthase 5 OS=Dictyostelium discoideum GN=pks5 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.047e-15
Identity = 66/236 (27.97%), Postives = 113/236 (47.88%), Query Frame = 3
Query:   48 SPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTS--HLSPGESFLVHGGSSGIGTFAIQMGKCQGVR--VFVTAGSEE-KLAVCKDLGADVCINYKTED--FVARVKEE-----TGGKGVDVILDCMGASYFQRNLDSLNIDGRL 719
            SP +    + +  +++D++V +K  AT +N  D L   G        +P  G E SG I  VG NV  +KVGD V   L     +  + V   ++   PS +S  +AA+ P    T + ++F     ++   ES L+H GS   G    ++ K +G +  +FVT  S+E K  +  + G  +   Y   D  +V+++K +     +   GVD+IL+ + + +   N   L I+GR+
Sbjct: 1803 SPNLEYQLQSKQIKLRDNQVEVKTIATGINNKDYLVYSGLEGSVNSNTPQFGYEFSGIITRVGNNVKDYKVGDNVFG-LSNSCTSSNIIVNHERIQIKPSNISHIEAASIPIDYLTSFMSLFNVGCLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVNSDEIKQYLLNNYGDLITAIYSNTDKGYVSQIKNKLIEQGSNDNGVDLILNTLPSDFMDSNFQLLAINGRI 2037          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: PKS44_DICDI (Probable polyketide synthase 44 OS=Dictyostelium discoideum GN=pks44 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.047e-15
Identity = 58/202 (28.71%), Postives = 98/202 (48.51%), Query Frame = 3
Query:   72 EVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKG------ASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLS--PGESFLVHGGSSGIGTFAIQMGKCQGV--RVFVTAGSEEKLAVCKDLGADV---CINYKTEDFVARVKEETGGK 638
            E +   +K++E+ ++V AT +N  D+L  +   PP         + P  G ECSG +  +G  V ++KVGD V  +      +  +      VL  P  +S  +AA+ P V CT + ++F + +LS    ES L+H  S GIG   + + K  G   +++VT GS+EK    ++   D      + +  DF+  +K +   K
Sbjct: 1890 EAKQSNLKENEIEVQVVATGINFKDSLIFRNLVPPVLANHEGDFSKPEFGFECSGIVSRIGSKVKKFKVGDSVLGISWKSTSSHAINYQDAFVLK-PDNISFVEAASIPIVYCTSFYSLFYSGNLSIKNNESVLIHQASGGIGLACLNILKSCGFKSKLYVTVGSKEKEDYLRETYGDFITGIYSSRNTDFLENIKTDLSNK 2090          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: FAS_RAT (Fatty acid synthase OS=Rattus norvegicus GN=Fasn PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.047e-15
Identity = 61/207 (29.47%), Postives = 93/207 (44.93%), Query Frame = 3
Query:  108 LIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCK----DLGADVCINYKTEDFVARVKEETGGKGVDVILDCMGASYFQRNLDSLNIDGR 716
            L  V   +LN  D +   G   P      +   +C   +   G++    K G +V  L+   G A  V +    +  VPS  +L++AA+ P V  T + ++ +   +  GE+ L+H GS G+G  AI +    G RVF T GS EK A  +     L      N +   F   V   TGGKGVD++L+ +     Q ++  L   GR
Sbjct: 1557 LCTVYYASLNFRDIMLATGKLSPDAIPGKWASRDCMLGMEFSGRD----KCGRRVMGLVPAEGLATSVLLSPDFLWDVPSSWTLEEAASVPVVYTTAYYSLVVRGRIQHGETVLIHSGSGGVGQAAISIALSLGCRVFTTVGSAEKRAYLQARFPQLDDTSFANSRDTSFEQHVLLHTGGKGVDLVLNSLAEEKLQASVRCLAQHGR 1759          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: PKS15_DICDI (Probable polyketide synthase 15 OS=Dictyostelium discoideum GN=pks15 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.674e-15
Identity = 66/230 (28.70%), Postives = 114/230 (49.57%), Query Frame = 3
Query:   90 IKDDEVLIKVEATALNRADTLQRKGSYPPP----KGA--SPYPGLECSGTILSVGKNVS--RWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSH--LSPGESFLVHGGSSGIGTFAIQMGKCQGVR--VFVTAGSEEKLAVCKDLGADV---CINYKTEDFVARVKEE-----TGGKGVDVILDCMGASYFQRNLDSLNIDGRL 719
            IK ++V + V +  +N  D L   G  PP     KG   +P  G++ SG I  VGK+    ++KVGD+V  +      +  + +    ++  P+ +S  +AA+ P V  T   ++F   +  +   ES L+H G+ G+G  A+ + K +G +  +FVT GS+EK     D   D      + + +D+V ++K +     +  KGVD+IL+ + + Y   N   L   GR+
Sbjct: 2015 IKSNKVEVNVLSLGVNYKDYLVYCGLVPPEICNRKGDINNPEIGIDFSGIITRVGKDCGEDQFKVGDEVYGIAFDSS-SSHIIIDKDYIVKKPTNLSHSEAASIPAVYLTSLYSIFNIGNFNIQDNESILIHSGTGGVGLSALNILKWKGHKSHLFVTVGSKEKEQYLIDTYGDFITGIYSTRNKDYVKQIKLKLKQLGSNKKGVDLILNTLSSDYLDSNFKCLECGGRI 2243          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: FAS_MOUSE (Fatty acid synthase OS=Mus musculus GN=Fasn PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.674e-15
Identity = 60/207 (28.99%), Postives = 94/207 (45.41%), Query Frame = 3
Query:  108 LIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCK----DLGADVCINYKTEDFVARVKEETGGKGVDVILDCMGASYFQRNLDSLNIDGR 716
            L  V   +LN  D +   G   P      +   +C   +   G++    + G +V  L+   G A  V + +  +  VPS  +L++AA+ P V  T + ++ +   +  GE+ L+H GS G+G  AI +    G RVF T GS EK A  +     L      N +   F   V   TGGKGVD++L+ +     Q ++  L   GR
Sbjct: 1556 LCTVYYASLNFRDIMLATGKLSPDAIPGKWASRDCMLGMEFSGRD----RCGRRVMGLVPAEGLATSVLLSSDFLWDVPSSWTLEEAASVPVVYTTAYYSLVVRGRIQRGETVLIHSGSGGVGQAAISIALSLGCRVFTTVGSAEKRAYLQARFPQLDDTSFANSRDTSFEQHVLLHTGGKGVDLVLNSLAEEKLQASVRCLAQHGR 1758          
BLAST of FC931140 vs. ExPASy Swiss-Prot
Match: RT4I1_HUMAN (Reticulon-4-interacting protein 1, mitochondrial OS=Homo sapiens GN=RTN4IP1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.492e-15
Identity = 75/242 (30.99%), Postives = 110/242 (45.45%), Query Frame = 3
Query:   18 MKAIVITQPGSPEVLQL-QEVEDPQIK-DDEVLIKVEATALNRADTLQRKGSYPPPKGASPYP--------------GLECSGTILSVGKNVSRWKVGDQVCALLGG---GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSP----GESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGSEEKLAVCKDLGADVCINYKTEDFVARVKEETGGKGVDVILDCMGAS 674
            M A VI + G  EVL+  Q +  P I   +EV++KV A ++N  D   R G           P              G + SG ++  G +V  +K GD+V A +     G  +E V V   +V   P  ++   AA+ P VA T WS +     L+     G+  L+ G S G+GTFAIQ+ K     V     S++   + + LGAD  I+YK+     ++K     K  D ILD +G S
Sbjct:   43 MPAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKLGADDVIDYKSGSVEEQLKSL---KPFDFILDNVGGS 280          
The following BLAST results are available for this feature:
BLAST of FC931140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
PKS34_DICDI1.200e-1528.15Probable polyketide synthase 34 OS=Dictyostelium d... [more]
ADH4_KLULA1.200e-1526.27Alcohol dehydrogenase 4, mitochondrial OS=Kluyvero... [more]
PKS25_DICDI1.568e-1530.22Probable polyketide synthase 25 OS=Dictyostelium d... [more]
ADH2_PICST1.568e-1526.32Alcohol dehydrogenase 2 OS=Pichia stipitis GN=ADH2... [more]
PKS5_DICDI2.047e-1527.97Probable polyketide synthase 5 OS=Dictyostelium di... [more]
PKS44_DICDI2.047e-1528.71Probable polyketide synthase 44 OS=Dictyostelium d... [more]
FAS_RAT2.047e-1529.47Fatty acid synthase OS=Rattus norvegicus GN=Fasn P... [more]
PKS15_DICDI2.674e-1528.70Probable polyketide synthase 15 OS=Dictyostelium d... [more]
FAS_MOUSE2.674e-1528.99Fatty acid synthase OS=Mus musculus GN=Fasn PE=1 S... [more]
RT4I1_HUMAN3.492e-1530.99Reticulon-4-interacting protein 1, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionC34101H08EF PostHarvP1 Citrus clementina cDNA clone C34101H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931140 ID=FC931140; Name=FC931140; organism=Citrus clementina; type=EST; length=726bp
GGGAAAGTGAAGGCACAATGAAGGCAATAGTGATAACTCAACCCGGTAGC
CCAGAAGTGCTGCAGTTGCAAGAAGTAGAAGACCCTCAAATCAAAGACGA
CGAAGTGTTGATCAAAGTCGAAGCTACTGCCCTGAACCGGGCCGACACTC
TTCAACGAAAAGGCTCCTACCCTCCACCCAAAGGCGCCAGCCCTTACCCG
GGTCTCGAATGTTCCGGAACCATCCTGTCCGTTGGTAAAAACGTCTCTAG
ATGGAAAGTCGGCGACCAGGTGTGTGCTCTGCTTGGTGGAGGAGGGTATG
CTGAGAAAGTGGCTGTTCCAGCTGGACAAGTTCTTCCCGTTCCATCTGGT
GTCTCACTCAAAGATGCTGCTGCGTTTCCGGAGGTGGCTTGCACTGTTTG
GTCAACGGTTTTCATGACCAGTCACCTATCCCCAGGGGAGTCATTTCTGG
TTCATGGGGGCTCTAGTGGAATTGGTACATTTGCGATTCAGATGGGAAAA
TGCCAAGGAGTGAGAGTCTTTGTTACAGCAGGAAGTGAGGAAAAGCTGGC
TGTTTGCAAGGATCTTGGTGCGGATGTGTGCATCAATTACAAGACTGAGG
ATTTTGTTGCACGAGTGAAGGAAGAAACTGGTGGTAAAGGTGTTGATGTA
ATTCTAGATTGCATGGGAGCATCCTACTTTCAGCGTAACCTCGACAGCTT
GAACATTGATGGGAGGCTTTTCATAA
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