FC931146

Overview
NameFC931146
Unique NameFC931146
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15282 contig Ccv1_Contig15282:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931146 vs. ExPASy Swiss-Prot
Match: ASP6_CAEEL (Aspartic protease 6 OS=Caenorhabditis elegans GN=asp-6 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16
Identity = 50/136 (36.76%), Postives = 68/136 (50.00%), Query Frame = 3
Query:  294 LKNFMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARF-----DGIIGLGFREIAVGDAVP 686
            + +F D +Y G I IG+P Q F V+ DTGSSNLW+P   C    +C   S++ S  S+T+ + GKS  I YGSG  +G   Q               +  T  G  + + A F     DGI+GL F  +AV   VP
Sbjct:   63 VNDFGDFEYLGNITIGTPDQGFIVVLDTGSSNLWIPGPTC--KTNCKTKSKFDSTASSTFVKNGKSWTIQYGSGDAAGILGQDTVRFGAKGDSQLS-VPTTTFGIASKISADFKNDATDGILGLAFTSLAVDGVVP 195          
BLAST of FC931146 vs. ExPASy Swiss-Prot
Match: CARP_SYNRA (Syncephapepsin OS=Syncephalastrum racemosum GN=SPSR PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 49/130 (37.69%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  309 DAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIE-ATREGSLTFLLARFDGIIGLGFREIA--VGDAVPV 689
            D +Y+  + +G+P Q+  + FDTGSS+LW  S+ C    SC   S +   KS+TY ++GKS +I+YG GS +   +                IE ATRE S +F     DGI+GLGF  I+   G   PV
Sbjct:   86 DVEYYATVSVGTPAQSIKLDFDTGSSDLWFSSTLC---TSCGSKS-FDPTKSSTYKKVGKSWQISYGDGSSASGITATDNVELGGLKITGQTIELATRESS-SFSSGAIDGILGLGFDTISTVAGTKTPV 210          
BLAST of FC931146 vs. ExPASy Swiss-Prot
Match: CARP1_RHINI (Rhizopuspepsin-1 OS=Rhizopus niveus GN=RNAP PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 46/161 (28.57%), Postives = 75/161 (46.58%), Query Frame = 3
Query:  186 HSLNAARITKKERYMGGAGVSGVHHRLGDSDEDILPLKNFM-DAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREI 665
            ++LN A      R +G  G++             +P+ ++  D +Y+GE+ +G+P     + FDTGSS++W  S+ C  S     H++Y  +KS+TY   G++  I+YG GS +                    IE  +  S  F     DG++GLGF  I
Sbjct:   44 NALNKALAKYNRRKVGSGGIT-------TEASGSVPMVDYENDVEYYGEVTVGTPGIKLKLDFDTGSSDMWFASTLC--SSCSNSHTKYDPKKSSTYAADGRTWSISYGDGSSASGILATDNVNLGGLLIKKQTIELAKRESSAFATDVIDGLLGLGFNTI 195          
BLAST of FC931146 vs. ExPASy Swiss-Prot
Match: CARP5_RHINI (Rhizopuspepsin-5 OS=Rhizopus niveus PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 40/122 (32.79%), Postives = 61/122 (50.00%), Query Frame = 3
Query:  303 FMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISC-YFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREI 665
            + D +YFG++ +G+P     + FDTGSS+LW  SS C    +C Y  ++Y   +S TY + G++  I+YG GS +                    IE  R  + +F     DG++GLGF  I
Sbjct:   80 YNDIEYFGQVKVGTPGVTLKLDFDTGSSDLWFASSLC---TNCGYSQTKYNPNQSRTYAKDGRAWSISYGDGSSASGILGTDTVVLGGLTIQRQTIELARREASSFQNGPSDGLLGLGFNSI 198          
BLAST of FC931146 vs. ExPASy Swiss-Prot
Match: CARP_RHICH (Rhizopuspepsin OS=Rhizopus chinensis PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 40/134 (29.85%), Postives = 71/134 (52.99%), Query Frame = 3
Query:  270 DSDEDILPLKNF-MDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISC-YFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREI 665
            D+    +P+ ++  D +Y+G++ IG+P + F++ FDTGSS+LW+ S+ C    +C    ++Y  ++S+TY   G++  I+YG GS +                    IE  +  + +F     DG++GLGF  I
Sbjct:   68 DAGVGTVPMTDYGNDVEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLC---TNCGSRQTKYDPKQSSTYQADGRTWSISYGDGSSASGILAKDNVNLGGLLIKGQTIELAKREAASFANGPNDGLLGLGFDTI 198          
BLAST of FC931146 vs. ExPASy Swiss-Prot
Match: CARP3_RHINI (Rhizopuspepsin-3 OS=Rhizopus niveus PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 39/121 (32.23%), Postives = 58/121 (47.93%), Query Frame = 3
Query:  303 FMDAQYFGEIGIGSPPQNFSVIFDTGSSNLWVPSSKCYFSISCYFHSRYKSRKSNTYTEIGKSCEINYGSGSISGFFSQXXXXXXXXXXXXXXFIEATREGSLTFLLARFDGIIGLGFREI 665
            + D +Y+GE+ +G+P     + FDTGSS+LW  SS C    S    ++Y   +S+TY   G++  I+YG GS +                    IE  R  +  F     DG++GLGF  I
Sbjct:   79 YNDIEYYGEVTVGTPGVTLKLDFDTGSSDLWFASSLCTNCGSS--QTKYNPNESSTYARDGRTWSISYGDGSSASGILGTDTVILGGLTIRHQTIELARREASQFQSGPSDGLLGLGFDSI 197          
The following BLAST results are available for this feature:
BLAST of FC931146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
ASP6_CAEEL8.938e-1636.76Aspartic protease 6 OS=Caenorhabditis elegans GN=a... [more]
CARP_SYNRA4.152e-1337.69Syncephapepsin OS=Syncephalastrum racemosum GN=SPS... [more]
CARP1_RHINI1.208e-1228.57Rhizopuspepsin-1 OS=Rhizopus niveus GN=RNAP PE=1 S... [more]
CARP5_RHINI4.591e-1232.79Rhizopuspepsin-5 OS=Rhizopus niveus PE=3 SV=2[more]
CARP_RHICH1.744e-1129.85Rhizopuspepsin OS=Rhizopus chinensis PE=1 SV=2[more]
CARP3_RHINI8.658e-1132.23Rhizopuspepsin-3 OS=Rhizopus niveus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34102A02EF PostHarvP1 Citrus clementina cDNA clone C34102A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931146 ID=FC931146; Name=FC931146; organism=Citrus clementina; type=EST; length=710bp
GGAAGTACATTATCTTCACTTTACCTTGCTTCAAACTCAGCTTCAGCAGA
AAACCAAAGAACATCATGGAGCAGAAACTTCTTCGGTCAGTTTTCTGTTT
ATGGGTGCTAGCGTCGTGCTTGCTTCTTCCTGCTTCCTCTAATGGCTTAC
GGAGAATTGGCTTGAAGAAGCGGCGTCTAGATCTTCATAGTCTAAATGCT
GCAAGAATAACAAAAAAAGAGCGATATATGGGGGGAGCAGGTGTTAGTGG
CGTGCACCATCGTTTGGGTGATTCAGATGAAGATATTTTGCCTTTGAAGA
ACTTTATGGATGCTCAATACTTTGGAGAGATTGGTATTGGCTCTCCCCCA
CAAAATTTCAGTGTCATATTTGATACCGGCAGTTCCAATCTCTGGGTTCC
ATCTTCAAAGTGCTATTTCTCTATTTCCTGCTATTTCCATTCGAGGTACA
AGTCCAGAAAATCCAATACATATACCGAAATTGGAAAATCCTGTGAAATA
AACTATGGATCTGGATCAATTTCTGGCTTCTTCAGTCAAGACAATGTTGA
AGTTGGGGATGTTGTTGTCAAGGATCAGGTTTTCATTGAGGCTACACGAG
AAGGGAGTCTCACTTTTCTATTGGCAAGGTTTGATGGAATAATAGGGCTT
GGGTTCCGGGAAATTGCAGTTGGGGATGCTGTGCCTGTGTGGGACATATG
GTTGAGCAGG
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