FC931147

Overview
NameFC931147
Unique NameFC931147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL10A_HUMAN (60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 6.977e-63
Identity = 114/207 (55.07%), Postives = 153/207 (73.91%), Query Frame = 1
Query:   64 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            SK+  D L EA+  ++ +  +  +R F ET+ELQI LKNYDPQKD+RFSG+V+L   PRPK  VC+LGD QH +EA+ + + +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E++ +KV+E K+T+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KS
Sbjct:    3 SKVSRDTLYEAVREVL-HGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKS 208          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL10A_BOVIN (60S ribosomal protein L10a OS=Bos taurus GN=RPL10A PE=2 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 6.977e-63
Identity = 114/207 (55.07%), Postives = 153/207 (73.91%), Query Frame = 1
Query:   64 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            SK+  D L EA+  ++ +  +  +R F ET+ELQI LKNYDPQKD+RFSG+V+L   PRPK  VC+LGD QH +EA+ + + +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E++ +KV+E K+T+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KS
Sbjct:    3 SKVSRDTLYEAVREVL-HGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKS 208          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL10A_CHLRE (60S ribosomal protein L10a OS=Chlamydomonas reinhardtii GN=RPL10A PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.112e-63
Identity = 124/208 (59.62%), Postives = 154/208 (74.04%), Query Frame = 1
Query:   61 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            MSK+ +D LRE++S++V+ +K T  R F ET+ELQIGLKNYDPQKD+RFSGSV+LP +PRP+M+V   GD +H E+A  IG+D   VE                  YHAFLAS+SVIKQIPRLLGPGLNKAGKFP  +   ++LE  V +TK ++KFQLKKVLCMGVAV N+ M E +I  N+  ++NFLVSLLKKNWQNVRCLY+KS
Sbjct:    1 MSKISNDVLRESVSALVEGAK-TKPRKFQETVELQIGLKNYDPQKDKRFSGSVRLPFVPRPRMRV-RAGDVKHCEQAGAIGVDAKGVEDLKKLNKNKKLVKKLAQAYHAFLASDSVIKQIPRLLGPGLNKAGKFPAPIN--KNLEEMVLDTKCSIKFQLKKVLCMGVAVANVGMTEGEIRTNIMYAINFLVSLLKKNWQNVRCLYIKS 204          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL10A_CAEEL (60S ribosomal protein L10a OS=Caenorhabditis elegans GN=rpl-10a PE=1 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.554e-62
Identity = 118/208 (56.73%), Postives = 154/208 (74.04%), Query Frame = 1
Query:   61 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            MSK+  ++L EAI+ +++ S E   R F ETIELQIGLKNYDPQKD+RFSGS++L HIPRP MKVC+ GD  H++EA    +  M  +                  Y AF+ASES+IKQIPR+LGPGLNKAGKFP++VTH ESL+SK +E +ATVKFQ+KKVLC+ VAVG++ + ++++  N+ +S+NFLVSLLKKNWQNVR L +KS
Sbjct:    1 MSKVSRESLNEAIAEVLKGSSE-KPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKS 207          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL1_YEAST (60S ribosomal protein L1 OS=Saccharomyces cerevisiae GN=RPL1A PE=1 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.030e-62
Identity = 115/208 (55.29%), Postives = 149/208 (71.63%), Query Frame = 1
Query:   61 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            MSK+ S  +RE +  +++YS ET KRNF ET+ELQ+GLKNYDPQ+D+RFSGS+KLP+ PRP M +C+ GDA  V+ A+  G+D M V+                  Y+AF+ASE +IKQ+PRLLGP L+KAGKFPT V+H + L  KV + ++T+KFQLKKVLC+ VAVGN+ MEE  +   + MSVNF VSLLKKNWQNV  L +KS
Sbjct:    1 MSKITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQNVGSLVVKS 208          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL10A_MOUSE (60S ribosomal protein L10a OS=Mus musculus GN=Rpl10a PE=1 SV=3)

HSP 1 Score: 238.424 bits (607), Expect = 2.651e-62
Identity = 113/207 (54.59%), Postives = 152/207 (73.43%), Query Frame = 1
Query:   64 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            SK+  D L EA+  ++ +  +  +R F ET+ELQI LKNYDPQKD+RFSG+V+L   PRPK  VC+LGD QH +E + + + +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E++ +KV+E K+T+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KS
Sbjct:    3 SKVSRDTLYEAVREVL-HGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDERKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKS 208          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL10A_MACFA (60S ribosomal protein L10a OS=Macaca fascicularis GN=RPL10A PE=2 SV=3)

HSP 1 Score: 236.498 bits (602), Expect = 1.007e-61
Identity = 112/207 (54.11%), Postives = 152/207 (73.43%), Query Frame = 1
Query:   64 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            SK+  D L EA+  ++ +  +  +R F ET+ELQI LKNYDPQKD+RFSG+V+L   PRPK  VC+LGD QH +EA+ + + +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+ +TH E++ +KV+E K+T+KFQ+K+VLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KS
Sbjct:    3 SKVSRDTLYEAVREVL-HGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSPLTHNENMVAKVDEVKSTIKFQMKRVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKS 208          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL10A_ASHGO (60S ribosomal protein L10a OS=Ashbya gossypii GN=RPL10A PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.316e-61
Identity = 114/208 (54.81%), Postives = 150/208 (72.12%), Query Frame = 1
Query:   61 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            MSK+ +  +R+ +  +++YS ET KRNF ET+ELQ+GLKNYDPQ+D+RFSG++KLP  PRP M VC+ GDA  V+ A+  G+D M V+                  Y+AF+ASE +IKQ+PRLLGP L+KAGKFPT V+H + L SKV + ++T+KFQLKKVLC+ VAVGN+ M+E  +   + MSVNFLVSLLKKNWQNV  L +KS
Sbjct:    1 MSKITTTHVRDNVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGTLKLPVCPRPNMSVCIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLAKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYSKVTDVRSTIKFQLKKVLCLAVAVGNVEMDEDTLVNQILMSVNFLVSLLKKNWQNVGSLVIKS 208          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL10A_CANGA (60S ribosomal protein L10a OS=Candida glabrata GN=RPL10A PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.244e-61
Identity = 113/208 (54.33%), Postives = 149/208 (71.63%), Query Frame = 1
Query:   61 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            MSK+ +  +RE +  +++YS ET KRNF ET+ELQ+GLKNYDPQ+D+RFSG++KLP  PRP M +C+ GDA  V+ A+  G+D M V+                  Y+AF+ASE +IKQ+PRLLGP L+KAGKFPT V+H + L  KV + ++T+KFQLKKVLC+ VAVGN+ M+E  +   + MSVNFLVSLLKKNWQNV  L +KS
Sbjct:    1 MSKITTSHVRENVKELLKYSAETKKRNFLETVELQVGLKNYDPQRDKRFSGTLKLPVCPRPNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMDEDTLVNQILMSVNFLVSLLKKNWQNVGSLVIKS 208          
BLAST of FC931147 vs. ExPASy Swiss-Prot
Match: RL10A_CANAL (60S ribosomal protein L10a OS=Candida albicans GN=RPL10A PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.530e-61
Identity = 113/208 (54.33%), Postives = 148/208 (71.15%), Query Frame = 1
Query:   61 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDRRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVXMSVNFLVSLLKKNWQNVRCLYLKS 684
            MSK+ S  +RE +  +++YS ET KRNF ET+ELQ+GLKNYDPQ+D+RFSG++KLP +PRP M  C+ GDA   + A+ +G+D M V+                  Y+AF+ASE +IKQIPRLLG  L+KAG+FPT V+H + L SKV + K+T+KFQLKKVLC+ VAVGN+ MEE  +   + M+ NFLVSLLKKNWQNV  L +KS
Sbjct:    1 MSKITSSGVREYVHKLLEYSTETKKRNFLETVELQVGLKNYDPQRDKRFSGTLKLPQVPRPNMTTCIFGDAFDFDRAKSLGVDAMSVDDLKKLNKNKKLIKKLAKKYNAFIASEVLIKQIPRLLGRTLSKAGQFPTPVSHNDDLYSKVTDVKSTIKFQLKKVLCLAVAVGNVDMEEDVLVNQIMMAANFLVSLLKKNWQNVGSLVIKS 208          
The following BLAST results are available for this feature:
BLAST of FC931147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL10A_HUMAN6.977e-6355.0760S ribosomal protein L10a OS=Homo sapiens GN=RPL1... [more]
RL10A_BOVIN6.977e-6355.0760S ribosomal protein L10a OS=Bos taurus GN=RPL10A... [more]
RL10A_CHLRE9.112e-6359.6260S ribosomal protein L10a OS=Chlamydomonas reinha... [more]
RL10A_CAEEL1.554e-6256.7360S ribosomal protein L10a OS=Caenorhabditis elega... [more]
RL1_YEAST2.030e-6255.2960S ribosomal protein L1 OS=Saccharomyces cerevisi... [more]
RL10A_MOUSE2.651e-6254.5960S ribosomal protein L10a OS=Mus musculus GN=Rpl1... [more]
RL10A_MACFA1.007e-6154.1160S ribosomal protein L10a OS=Macaca fascicularis ... [more]
RL10A_ASHGO1.316e-6154.8160S ribosomal protein L10a OS=Ashbya gossypii GN=R... [more]
RL10A_CANGA2.244e-6154.3360S ribosomal protein L10a OS=Candida glabrata GN=... [more]
RL10A_CANAL6.530e-6154.3360S ribosomal protein L10a OS=Candida albicans GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34102A03EF PostHarvP1 Citrus clementina cDNA clone C34102A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931147 ID=FC931147; Name=FC931147; organism=Citrus clementina; type=EST; length=685bp
AGGGTTTCTTTTTCGTCTTCGACGAAAAAAAATCTGTAAAGGACTCCAAG
CGCTTCAATCATGAGCAAGCTTCAGAGTGATGCACTGAGAGAGGCCATCT
CTAGTATTGTGCAATACTCTAAGGAGACAAATAAGAGGAACTTCACCGAG
ACTATTGAGCTTCAGATTGGTCTCAAGAACTATGATCCACAAAAGGACAG
GCGTTTCAGTGGCTCTGTTAAGTTGCCTCACATTCCCCGCCCCAAGATGA
AGGTCTGCATGCTTGGTGATGCTCAACATGTTGAAGAGGCCGAGAAGATT
GGTTTGGACTACATGGATGTTGAAGGATTGAAAAAATTGAACAAGAACAA
GAAATTGGTGAAGAAACTTGCCAAGAAATATCATGCTTTCTTGGCATCAG
AGTCTGTCATCAAGCAGATTCCTCGTTTGTTGGGTCCTGGTCTCAACAAG
GCAGGAAAGTTCCCTACCCTTGTTACTCACCAAGAATCCCTGGAGTCCAA
AGTCAACGAGACTAAGGCAACAGTGAAGTTCCAATTGAAGAAGGTGCTTT
GCATGGGAGTTGCTGTCGGAAACCTTTCAATGGAGGAGAAGCAGATCTTC
CAGAATGTTNCAATGAGTGTTAACTTCCTTGTCTCATTGTTGAAGAAAAA
CTGGCAGAATGTCAGGTGCCTCTATCTGAAGAGTA
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