FC931149

Overview
NameFC931149
Unique NameFC931149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11368 contig Ccv1_Contig11368:107..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HFA2E_ORYSJ (Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.097e-25
Identity = 50/79 (63.29%), Postives = 60/79 (75.95%), Query Frame = 3
Query:  477 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENF 713
            P PFL KTY +VDDP+TD V+SW+ +  +F+VW    F   LLP YFKHNNFSSFVRQLNTYGFRK+  ++W FANE F
Sbjct:   36 PPPFLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGNVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGF 114          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSFA3_ORYSJ (Heat stress transcription factor A-3 OS=Oryza sativa subsp. japonica GN=HSFA3 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.058e-24
Identity = 51/87 (58.62%), Postives = 66/87 (75.86%), Query Frame = 3
Query:  453 ERMAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENF 713
            E + Q     PFL KTY LV +P  D VISW  +G +F+VW  + FA+D+LP++FKHNNFSSFVRQLNTYGFRK+ A++W FA+E+F
Sbjct:   57 EALLQGPQLPPFLSKTYDLVCEPELDGVISWGHAGNSFVVWDPSAFARDVLPHHFKHNNFSSFVRQLNTYGFRKVHADRWEFAHEDF 143          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSFA3_ARATH (Heat stress transcription factor A-3 OS=Arabidopsis thaliana GN=HSFA3 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.058e-24
Identity = 51/77 (66.23%), Postives = 61/77 (79.22%), Query Frame = 3
Query:  483 PFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENF 713
            PFL KT+ LVDDP+ D VISW  +GA+F+VW   +FA+ +LP  FKHNNFSSFVRQLNTYGFRKI  ++W FANE F
Sbjct:   55 PFLSKTFDLVDDPTLDPVISWGLTGASFVVWDPLEFARIILPRNFKHNNFSSFVRQLNTYGFRKIDTDKWEFANEAF 131          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSFA2_ARATH (Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.058e-24
Identity = 48/79 (60.76%), Postives = 62/79 (78.48%), Query Frame = 3
Query:  477 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENF 713
            P PFL KTY++V+DP+TD V+SW+    +F+VW +  F+  LLP YFKH+NFSSF+RQLNTYGFRKI  ++W FANE F
Sbjct:   42 PPPFLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKIDPDRWEFANEGF 120          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HFA2D_ORYSJ (Heat stress transcription factor A-2d OS=Oryza sativa subsp. japonica GN=HSFA2D PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.019e-24
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 3
Query:  477 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENF 713
            P PFL KT+ LV DP+TD V+SW  +G++F+VW    FA   LP +FKHNNFSSFVRQLNTYGFRKI  ++W FAN+ F
Sbjct:   35 PPPFLTKTFDLVADPATDGVVSWGRAGSSFVVWDPHVFAAVFLPRFFKHNNFSSFVRQLNTYGFRKIDPDRWEFANDGF 113          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HFA2B_ORYSJ (Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica GN=HSFA2B PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.019e-24
Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = 3
Query:  477 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENF 713
            P PFL KTY +VDD  TD  +SW+ +  +F+VW    FA  LLP +FKHNNFSSFVRQLNTYGFRK+  ++W FANENF
Sbjct:   50 PPPFLTKTYDMVDDAGTDAAVSWSATSNSFVVWDPHAFATVLLPRFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANENF 128          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSFC1_ARATH (Heat stress transcription factor C-1 OS=Arabidopsis thaliana GN=HSFC1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.855e-24
Identity = 51/89 (57.30%), Postives = 67/89 (75.28%), Query Frame = 3
Query:  447 NRERMAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENF 713
            N       +V APF++KTYQ+V+DPSTD +I+W  +  +FIV    DF++ +LP YFKHNNFSSFVRQLNTYGFRK+  ++W FANE+F
Sbjct:    5 NSNNNNNNNVIAPFIVKTYQMVNDPSTDWLITWGPAHNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEHF 93          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSF30_SOLPE (Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.855e-24
Identity = 48/79 (60.76%), Postives = 62/79 (78.48%), Query Frame = 3
Query:  477 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENF 713
            P PFL KTY++V+D STD VISW+ +  +FIVW +  F+  LLP +FKH+NFSSF+RQLNTYGFRK+  ++W FANE F
Sbjct:   29 PPPFLSKTYEMVEDSSTDQVISWSTTRNSFIVWDSHKFSTTLLPRFFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGF 107          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HFA6B_ARATH (Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.953e-24
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 3
Query:  471 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENF 713
            S P PFL KTY LV+D  T+ V+SW++S  +FIVW    F+  LLP +FKHNNFSSFVRQLNTYGFRK+  ++W FANE F
Sbjct:   57 SGPPPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDRWEFANEGF 137          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HFA4C_ARATH (Heat stress transcription factor A-4c OS=Arabidopsis thaliana GN=HSFA4C PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.169e-23
Identity = 46/77 (59.74%), Postives = 63/77 (81.82%), Query Frame = 3
Query:  483 PFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANENF 713
            PFL KTY++VDD S+D V++W+E+  +FIV   A+F++DLLP +FKH NFSSF+RQLNTYGFRK+  E+W F N++F
Sbjct:   13 PFLTKTYEMVDDSSSDSVVAWSENNKSFIVKNPAEFSRDLLPRFFKHKNFSSFIRQLNTYGFRKVDPEKWEFLNDDF 89          
The following BLAST results are available for this feature:
BLAST of FC931149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
HFA2E_ORYSJ8.097e-2563.29Heat stress transcription factor A-2e OS=Oryza sat... [more]
HSFA3_ORYSJ1.058e-2458.62Heat stress transcription factor A-3 OS=Oryza sati... [more]
HSFA3_ARATH1.058e-2466.23Heat stress transcription factor A-3 OS=Arabidopsi... [more]
HSFA2_ARATH1.058e-2460.76Heat stress transcription factor A-2 OS=Arabidopsi... [more]
HFA2D_ORYSJ4.019e-2462.03Heat stress transcription factor A-2d OS=Oryza sat... [more]
HFA2B_ORYSJ4.019e-2462.03Heat stress transcription factor A-2b OS=Oryza sat... [more]
HSFC1_ARATH6.855e-2457.30Heat stress transcription factor C-1 OS=Arabidopsi... [more]
HSF30_SOLPE6.855e-2460.76Heat shock factor protein HSF30 OS=Solanum peruvia... [more]
HFA6B_ARATH8.953e-2461.73Heat stress transcription factor A-6b OS=Arabidops... [more]
HFA4C_ARATH1.169e-2359.74Heat stress transcription factor A-4c OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC34102A05EF PostHarvP1 Citrus clementina cDNA clone C34102A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931149 ID=FC931149; Name=FC931149; organism=Citrus clementina; type=EST; length=717bp
GTCTCTTTTATTTAATTTTTGTTTGATCGTTTATTAATTTATTTTGTTGC
GTTTCTCAAAATTTCTAGAACCCGCGTCACTTTCCTTTCCAATCTCTCTT
TATAAGAGACCCGTGCAAGAATTAACAAAGAGAACGTTTCGAATATTTTT
CAGAGAAGTTATGGTCTTTGCTCATCTAGCCGAAGGACTGGTTAGATTGG
CGATTGCTCATGGAAGCACATAGGAGCAAACGTAGTGGCAATATTTTTCT
TTCTGGGTTTTATTGCTGGGGCTGGGAATTCTTGACTGCCCTCTTGCTCT
TTAGTTGCTCCGTCTAGACCCCAAAAATATATTCATCTCACAAATTAAAG
TAGTAGGTGTTAGAGGGTTTCGAGATTTTCATTCAAGTGTAATTATTTTT
GTTTTTCTCAAAAAGGGTAGTGATTTTGGGGGGTTGGTGAGGGGCAAATC
GGGAAAGAATGGCGCAGAGGTCGGTTCCGGCGCCGTTCCTGATGAAGACG
TACCAGTTGGTGGATGATCCGAGCACTGATGATGTGATATCGTGGAATGA
AAGTGGCGCCACTTTTATTGTCTGGAAAACTGCTGATTTTGCCAAGGATC
TGCTGCCTAATTACTTCAAGCACAACAATTTTTCAAGCTTTGTCCGCCAA
CTCAATACTTATGGATTTCGGAAAATCGTGGCCGAACAATGGGGATTCGC
CAACGAGAACTTCCGTC
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