FC931149

Overview
NameFC931149
Unique NameFC931149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11368 contig Ccv1_Contig11368:107..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSF2_MOUSE (Heat shock factor protein 2 OS=Mus musculus GN=Hsf2 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.973e-16
Identity = 39/83 (46.99%), Postives = 56/83 (67.47%), Query Frame = 3
Query:  459 MAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQWGFANE 707
            M Q S    FL K + LV++  T++ I+W+++G +F+V     FAK++LP YFKHNN +SFVRQLN YGFRK+V  + G   +
Sbjct:    1 MKQSSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIESGIIKQ 83          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSF2_HUMAN (Heat shock factor protein 2 OS=Homo sapiens GN=HSF2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.172e-15
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 3
Query:  459 MAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV 680
            M Q S    FL K + LV++  T++ I+W+++G +F+V     FAK++LP YFKHNN +SFVRQLN YGFRK+V
Sbjct:    1 MKQSSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVV 74          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSF2_CHICK (Heat shock factor protein 2 OS=Gallus gallus GN=HSF2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 3
Query:  462 AQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV 680
            A   VPA FL K + LV +  ++ +I+W+++G +F+V     FAK++LP YFKHNN +SFVRQLN YGFRK+V
Sbjct:   17 AGAGVPA-FLSKLWALVGEAPSNQLITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVV 88          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSF_DROME (Heat shock factor protein OS=Drosophila melanogaster GN=Hsf PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 3
Query:  474 VPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVA 683
            VPA FL K ++LVDD  T+ +I W + G +F++   A FAK+LLP  +KHNN +SF+RQLN YGF KI +
Sbjct:   46 VPA-FLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITS 114          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSF_YEAST (Heat shock factor protein OS=Saccharomyces cerevisiae GN=HSF1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.770e-14
Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = 3
Query:  450 RERMAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKI-----------VAEQWGFANENF 713
            R   + +S PA F+ K + +++D S   +I W E G +FIV    +F   +LP YFKH+NF+SFVRQLN YG+ K+             ++W F NENF
Sbjct:  164 RRYQSHKSRPA-FVNKLWSMLNDDSNTKLIQWAEDGKSFIVTNREEFVHQILPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSIQSSSDDKWQFENENF 261          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: PRR1_SCHPO (Transcription factor prr1 OS=Schizosaccharomyces pombe GN=prr1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 33/87 (37.93%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  486 FLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAEQ----------WGFANENFR 716
            F+ K + ++++P    ++ W++SG +FIV  T +F K +LP +FKH+NF+SFVRQLN Y F K+  E+          W F +++F+
Sbjct:   10 FVRKLFNMLEEPEYRHILRWSDSGDSFIVLDTNEFTKTILPRHFKHSNFASFVRQLNKYDFHKVRHEEGAPSIYGEGAWEFRHDDFQ 96          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: HSF_KLULA (Heat shock factor protein OS=Kluyveromyces lactis GN=HSF PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 38/94 (40.43%), Postives = 56/94 (59.57%), Query Frame = 3
Query:  468 RSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV-----------AEQWGFANENFR 716
            R+ PA F+ K + +V+D S +  I W+ SG + +V     F +++LP YFKH+NF+SFVRQLN YG+ K+              +W F NENF+
Sbjct:  192 RARPA-FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENENFK 284          
BLAST of FC931149 vs. ExPASy Swiss-Prot
Match: SKN7_YEAST (Transcription factor SKN7 OS=Saccharomyces cerevisiae GN=SKN7 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 32/89 (35.96%), Postives = 52/89 (58.43%), Query Frame = 3
Query:  486 FLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV------------AEQWGFANENFR 716
            F+ K ++++++    D+++W E+G +F+V  T  F   +LPN+FKH+NF+SFVRQLN Y F K+              + W F +  FR
Sbjct:   87 FVRKLFRILENNEYPDIVTWTENGKSFVVLDTGKFTTHILPNHFKHSNFASFVRQLNKYDFHKVKRSPEERQRCKYGEQSWEFQHPEFR 175          
The following BLAST results are available for this feature:
BLAST of FC931149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
HSF2_MOUSE8.973e-1646.99Heat shock factor protein 2 OS=Mus musculus GN=Hsf... [more]
HSF2_HUMAN1.172e-1551.35Heat shock factor protein 2 OS=Homo sapiens GN=HSF... [more]
HSF2_CHICK9.921e-1552.05Heat shock factor protein 2 OS=Gallus gallus GN=HS... [more]
HSF_DROME2.210e-1452.86Heat shock factor protein OS=Drosophila melanogast... [more]
HSF_YEAST3.770e-1440.40Heat shock factor protein OS=Saccharomyces cerevis... [more]
PRR1_SCHPO5.444e-1337.93Transcription factor prr1 OS=Schizosaccharomyces p... [more]
HSF_KLULA5.444e-1340.43Heat shock factor protein OS=Kluyveromyces lactis ... [more]
SKN7_YEAST2.069e-1235.96Transcription factor SKN7 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC34102A05EF PostHarvP1 Citrus clementina cDNA clone C34102A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931149 ID=FC931149; Name=FC931149; organism=Citrus clementina; type=EST; length=717bp
GTCTCTTTTATTTAATTTTTGTTTGATCGTTTATTAATTTATTTTGTTGC
GTTTCTCAAAATTTCTAGAACCCGCGTCACTTTCCTTTCCAATCTCTCTT
TATAAGAGACCCGTGCAAGAATTAACAAAGAGAACGTTTCGAATATTTTT
CAGAGAAGTTATGGTCTTTGCTCATCTAGCCGAAGGACTGGTTAGATTGG
CGATTGCTCATGGAAGCACATAGGAGCAAACGTAGTGGCAATATTTTTCT
TTCTGGGTTTTATTGCTGGGGCTGGGAATTCTTGACTGCCCTCTTGCTCT
TTAGTTGCTCCGTCTAGACCCCAAAAATATATTCATCTCACAAATTAAAG
TAGTAGGTGTTAGAGGGTTTCGAGATTTTCATTCAAGTGTAATTATTTTT
GTTTTTCTCAAAAAGGGTAGTGATTTTGGGGGGTTGGTGAGGGGCAAATC
GGGAAAGAATGGCGCAGAGGTCGGTTCCGGCGCCGTTCCTGATGAAGACG
TACCAGTTGGTGGATGATCCGAGCACTGATGATGTGATATCGTGGAATGA
AAGTGGCGCCACTTTTATTGTCTGGAAAACTGCTGATTTTGCCAAGGATC
TGCTGCCTAATTACTTCAAGCACAACAATTTTTCAAGCTTTGTCCGCCAA
CTCAATACTTATGGATTTCGGAAAATCGTGGCCGAACAATGGGGATTCGC
CAACGAGAACTTCCGTC
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