FC931155

Overview
NameFC931155
Unique NameFC931155
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15283 contig Ccv1_Contig15283:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931155 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.655e-16
Identity = 37/86 (43.02%), Postives = 48/86 (55.81%), Query Frame = 1
Query:  280 CDFCSDQIAVLYCRADSAKLCLFCDHHVHSANLLSKKHIRSQICDNCRSEPVTFRCATDNLVLCQECDWDAHGSCSVSAAHDRVPI 537
            CD C      +YCRADSA LC  CD  VH+AN L+ +H R ++C +C   P  F C  D   LC  CD + H +  ++  H RVPI
Sbjct:   12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPI 97          
BLAST of FC931155 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16
Identity = 36/86 (41.86%), Postives = 48/86 (55.81%), Query Frame = 1
Query:  280 CDFCSDQIAVLYCRADSAKLCLFCDHHVHSANLLSKKHIRSQICDNCRSEPVTFRCATDNLVLCQECDWDAHGSCSVSAAHDRVPI 537
            CD C      +YC ADSA LC  CD  VH+AN ++ +H R ++C +C S P  F C  D   LC  CD + H +  ++  H RVPI
Sbjct:   16 CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRVPI 101          
BLAST of FC931155 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 38/89 (42.70%), Postives = 49/89 (55.06%), Query Frame = 1
Query:  280 CDFCSDQIAVLYCRADSAKLCLFCDHHVHSANLLSKKHIRSQICDNCRSEPVTFRCATDNLVLCQECDWDAHGSCSVSAAHDRVPIEGF 546
            CD C    A L+CRAD+A LC  CD  +H+AN L+ +H R  +C+ C   P    C  D   LC  CD D H +  +S  H+RVPI  F
Sbjct:    8 CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPF 96          
BLAST of FC931155 vs. ExPASy Swiss-Prot
Match: COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 34/89 (38.20%), Postives = 47/89 (52.81%), Query Frame = 1
Query:  280 CDFCSDQIAVLYCRADSAKLCLFCDHHVHSANLLSKKHIRSQICDNCRSEPVTFRCATDNLVLCQECDWDAHGSCSVSAAHDRVPIEGF 546
            CD C    A ++CR DSA LC+ CD  +HS      +H R  +C+ C   P    C  D   LC  CD D H +  +++ H+RVP+E F
Sbjct:   22 CDACKSVTAAVFCRVDSAFLCIACDTRIHSFT----RHERVWVCEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPVETF 106          
BLAST of FC931155 vs. ExPASy Swiss-Prot
Match: STHX_ARATH (Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 36/102 (35.29%), Postives = 51/102 (50.00%), Query Frame = 1
Query:  274 VPCDFCSDQIAVLYCRADSAKLCLFCDHHVHSANLLSKKHIR------------SQICDNCRSEPVTFRCATDNLVLCQECDWDAHGSCSVSAAHDRVPIEG 543
            + CD C  + A ++C AD A LC  CDH VH AN L+ KH+R            S +CD C+ +     C  D  +LC++CD   H +   +  HDR  + G
Sbjct:    3 IRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLCDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTG 104          
BLAST of FC931155 vs. ExPASy Swiss-Prot
Match: STO_ARATH (Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 34/94 (36.17%), Postives = 46/94 (48.94%), Query Frame = 1
Query:  274 VPCDFCSDQIAVLYCRADSAKLCLFCDHHVHSANLLSKKHIRSQI---------CDNCRSEPVTFRCATDNLVLCQECDWDAHGSCSVSAAHDR 528
            + CD C    A + C AD A LC  CD  +H+AN L+ KH R  +         CD C+ +     C  D  +LC++CD   H + S SA H R
Sbjct:    3 IQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQR 96          
The following BLAST results are available for this feature:
BLAST of FC931155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
COL1_ARATH1.655e-1643.02Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
COL2_ARATH2.161e-1641.86Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... [more]
COL3_ARATH4.814e-1642.70Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
COL5_ARATH3.450e-1438.20Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... [more]
STHX_ARATH7.686e-1435.29Probable salt tolerance-like protein At1g75540 OS=... [more]
STO_ARATH7.954e-1136.17Salt tolerance protein OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34102A11EF PostHarvP1 Citrus clementina cDNA clone C34102A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931155 ID=FC931155; Name=FC931155; organism=Citrus clementina; type=EST; length=678bp
GAGCGAGCAAGTTAACCCACCATCTTTGCTCATCAGCCAGCCTCGGTTTC
TACAAAAACAGAAATAACATTAATCCCCAAAAGGTCAAAAATGTTTCTTC
TCCTTGTTTCCAGAAATTGAAGAAAATTACCAAAACACACTCTCTTATCT
TCCTCCCCTTGCGATCAGTTAGGGTTTTGAAAACAAAAACACAAAATAAA
AAAGAAACTTTATTGAATATTTTGCTTGAAAATGGACATGGTGAGTCCGC
AATCCGACAGGAACAAAGAAAGCGTGCCGTGCGATTTCTGCAGTGACCAA
ATAGCGGTTCTTTACTGTAGAGCTGACTCAGCGAAGCTCTGTTTGTTCTG
CGACCACCACGTGCACTCGGCGAACCTACTTTCAAAGAAACACATCCGGT
CACAGATCTGCGATAACTGCCGCAGCGAACCAGTGACGTTCCGGTGCGCC
ACTGACAATTTGGTGCTCTGTCAAGAGTGCGATTGGGACGCGCACGGTAG
CTGCTCTGTGTCTGCCGCGCACGATCGCGTCCCAATCGAAGGCTTCTCCG
GTTGTCCATCGGCTCTCGAGCTGGCGTCCATGTGGAATTTCGATCTTCAG
GGTGAGAAACTGAACGAAACGGCGTCCTTTGGTGAGTACTGGTACGGGAG
TCAAGATTTCGAATCCTTGAGGATGTAT
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