FC931159

Overview
NameFC931159
Unique NameFC931159
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15352 contig Ccv1_Contig15352:174..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_ALCBS (3-ketoacyl-CoA thiolase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=fadA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.128e-18
Identity = 79/236 (33.47%), Postives = 113/236 (47.88%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGM-LKDGLWDVYNDCS--MGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            G    + A KL +  I+A + R  N D  L ++V +G V  +   G   AR  ++ AG+P +    TVN++C S ++A+  ASQSI  G  DV V GG+E M                GH ++  G+ L   +  V    S  MG  AE+  + H ITRE QD F V S +    A   G +  EIVP+E     G    + + DE +      + ++KLRP F    GTVTAG +
Sbjct:   24 GQFRHVRAEKLSAQLIQALMARNPNWDIQLTEDVIWGCVNQTKEQGMNIARNISMLAGLPRTSAAQTVNRLCGSSMQALHSASQSIMTGNGDVFVIGGVEHM----------------GHVAMDHGIDLNPEMSKVTAKASNMMGLTAEMLGKMHGITREQQDAFGVRSHKLAWEATQQGRWDNEIVPIEGHDQNGH-KVLCEIDEVIRPGASIEDMQKLRPVFDPANGTVTAGTS 242          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_VIBVY (3-ketoacyl-CoA thiolase OS=Vibrio vulnificus (strain YJ016) GN=fadA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 69/212 (32.55%), Postives = 103/212 (48.58%), Query Frame = 2
Query:   80 KRANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            +   V+PS ++++++G V      G   AR AAL AG+P  +   TVN++C S ++A+   +++I  G  ++ + GG+E M + P             H +   GM             MG  AE+  + H I+RE QD+FA  S  R  AA   G F  EI+P E  A  G   T+ D DE +      + L +LRP F    GTVTAG +
Sbjct:   41 RNPQVNPSEIEDIYWGCVQQTLEQGFNVARNAALLAGLPIEIGAVTVNRLCGSSMQALHDGARAIMTGDAEICLIGGVEHMGHVPMNHGVDFHPGMSKHVAKAAGM-------------MGLTAEMLGKLHGISREQQDEFAARSHARAHAATLEGRFKNEILPTEGHAADGTLFTL-DHDEVIRPETTVEGLSQLRPVFDPANGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_PSEPF (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf0-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.924e-18
Identity = 79/243 (32.51%), Postives = 116/243 (47.74%), Query Frame = 2
Query:    2 PMGGFLGTLS-SLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL-GKFDPAKLRKLRPSFKENGGTVTAGNA 709
            PMG   G +  +  A  + +  I   L+R   VDP+ V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+I  G  DV V GG+E M                GH S++ G+  +    L+       MG  AE+  + H ITRE QD F V S +    A   G F  EI+P++     G   T  D DE +  +     L  L+P+F   GGTVTAG +
Sbjct:   17 PMGRSKGGMHRNTRAEDMSAHLISKLLERNTKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAGQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM----------------GHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGITREQQDAFGVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKTF-DYDETIRPETTLESLAALKPAFNPKGGTVTAGTS 242          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_PSEF5 (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=fadA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.924e-18
Identity = 79/243 (32.51%), Postives = 117/243 (48.15%), Query Frame = 2
Query:    2 PMGGFLGTLS-SLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL-GKFDPAKLRKLRPSFKENGGTVTAGNA 709
            PMG   G +  +  A  + +  I   L+R A VDP+ V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+I  G  DV V GG+E M                GH S++ G+  +    L+       MG  AE+  + H ITRE QD F V S +    A   G F  EI+P++     G    + D DE +  +     L  L+P+F   GGTVTAG +
Sbjct:   17 PMGRSKGGMHRNTRAEDMSAHLISKLLERNAKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAGQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM----------------GHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGITREQQDAFGVRSHQLAHKATVEGKFKDEIIPMQGYDENGF-LKLFDYDETIRPETTLESLAALKPAFNPKGGTVTAGTS 242          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_ERWT9 (3-ketoacyl-CoA thiolase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=fadA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.924e-18
Identity = 78/235 (33.19%), Postives = 113/235 (48.09%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTI--VDKDEGL-GKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G    + A  L +  + + L R  +VDP+ + ++++G V      G   AR AAL A IP+SV  TTVN++C S ++A+  A+++I +G     + GG+E M + P             + +   GM             MG  AE+ A  H I+RE QD FA  S +R  AA  AG FA EIV V    G      +   D DE +  +     L  LRP+F    GTVTAG++
Sbjct:   20 GAFRHVRAEDLSAHLMRSLLSRNPSVDPATLDDIYWGCVQQTLEQGFNIARNAALLAEIPHSVPATTVNRLCGSSMQALHDAARAIMVGDARTCLIGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGM-------------MGLTAEMLARMHGISREMQDRFAARSHQRAAAATQAGHFAAEIVAV---CGHDADGVLKRYDADEVIRPETTVESLMALRPAFDPVDGTVTAGSS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_COLP3 (3-ketoacyl-CoA thiolase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=fadA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.513e-18
Identity = 80/240 (33.33%), Postives = 116/240 (48.33%), Query Frame = 2
Query:    2 PMG-GFLGTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSAN-LGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            PMG    G   ++ A  L +  ++  L R   ++P  +++V +G V      G   AR A+L AG+P S+   TVN++C S ++A+  AS SI  G  DV + GG+E M + P           + +D   D  L   +       +MG  AEL  +QH ITRE QD F   S ++   A  AG +  EIV  +     G   T+V+ DE +     A+ L  LRP F    GTVTAG +
Sbjct:   13 PMGRSKAGVFRNVRAEALSAHLMKQILVRNPALNPEDIEDVIWGCVKQTKEQGFNIARNASLLAGLPKSIGGVTVNRLCGSSMEALHQASTSIMSGQGDVFLIGGVEHMGHVP-----------MMYDVDFDPALNKNI--ALASGNMGLTAELLGKQHGITREMQDAFGARSHQKAHEAHLAGRWDNEIVATQGHDATG-ALTLVEHDEVIRPETTAESLSALRPVFDPVNGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_PSEAE (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa GN=fadA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.282e-18
Identity = 76/243 (31.28%), Postives = 115/243 (47.33%), Query Frame = 2
Query:    2 PMGGFLGTLSSLSATKLGSIAIEAALKRAN--VDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            PMG   G +   +  +  S  + + L   N  VDP+ V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+IQ G  DV V GG+E M                GH  ++ G+  +    L+       MG  AE+  + H I+RE QD F   S +    A   G F  EI+P+E     G    + D DE +      + L +L+P+F   GGTVTAG +
Sbjct:   17 PMGRSKGGMHRNTRAETMSAHLISKLLERNPKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIQTGNGDVFVIGGVEHM----------------GHVGMMHGVDPNPHLSLYAAKASGMMGLTAEMLGKMHGISREAQDKFGARSHQLAWKATQEGKFKDEIIPMEGYDENGF-LKVFDFDETIRPETTVETLAELKPAFNPKGGTVTAGTS 242          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_PSEAB (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=fadA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.282e-18
Identity = 76/243 (31.28%), Postives = 115/243 (47.33%), Query Frame = 2
Query:    2 PMGGFLGTLSSLSATKLGSIAIEAALKRAN--VDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            PMG   G +   +  +  S  + + L   N  VDP+ V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+IQ G  DV V GG+E M                GH  ++ G+  +    L+       MG  AE+  + H I+RE QD F   S +    A   G F  EI+P+E     G    + D DE +      + L +L+P+F   GGTVTAG +
Sbjct:   17 PMGRSKGGMHRNTRAETMSAHLISKLLERNPKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIQTGNGDVFVIGGVEHM----------------GHVGMMHGVDPNPHLSLYAAKASGMMGLTAEMLGKMHGISREAQDKFGARSHQLAWKATQEGKFKDEIIPMEGYDENGF-LKVFDFDETIRPETTVETLAQLKPAFNPKGGTVTAGTS 242          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_PSEA7 (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa (strain PA7) GN=fadA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.282e-18
Identity = 76/243 (31.28%), Postives = 115/243 (47.33%), Query Frame = 2
Query:    2 PMGGFLGTLSSLSATKLGSIAIEAALKRAN--VDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            PMG   G +   +  +  S  + + L   N  VDP+ V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+IQ G  DV V GG+E M                GH  ++ G+  +    L+       MG  AE+  + H I+RE QD F   S +    A   G F  EI+P+E     G    + D DE +      + L +L+P+F   GGTVTAG +
Sbjct:   17 PMGRSKGGMHRNTRAETMSAHLISKLLERNPKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIQTGNGDVFVIGGVEHM----------------GHVGMMHGVDPNPHLSLYAAKASGMMGLTAEMLGKMHGISREAQDKFGARSHQLAWKATQEGKFKDEIIPMEGYDENGF-LKVFDFDETIRPETTVETLAQLKPAFNPKGGTVTAGTS 242          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_ERWCT (3-ketoacyl-CoA thiolase OS=Erwinia carotovora subsp. atroseptica GN=fadA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.599e-18
Identity = 80/242 (33.06%), Postives = 116/242 (47.93%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKRAN-VDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK----------LRKLRPSFKENGGTVTAGNA 709
            G    + A  L +  + + L R   +D   + ++++G V  A   G   AR AAL A IP SV  TTVN++C S ++A+  A+++I +G  +V + GG+E M + P        G    H  L   + K           MG  AE+ A  H+I+RE QD FA  S +R   A  +GAF  EIVP   +AG        D D  L +FD  +          L  L+P+F    GTVTAG++
Sbjct:   20 GAFRQVRAEDLSAHLMRSLLSRNTALDAREIDDIYWGCVQQALEQGFNVARNAALLAEIPVSVPATTVNRLCGSSMQALHDAARAIMVGDANVCLIGGVEHMGHVPM-----NHGVDF-HPGLSRTIAKAA-------GMMGLTAEMLARMHNISREMQDQFAARSHQRAYHATQSGAFRHEIVP---TAGH-------DADGALQRFDYDEVIRPDTTIDSLAALKPAFDPVNGTVTAGSS 238          
The following BLAST results are available for this feature:
BLAST of FC931159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
FADA_ALCBS1.128e-1833.473-ketoacyl-CoA thiolase OS=Alcanivorax borkumensis... [more]
FADA_VIBVY1.473e-1832.553-ketoacyl-CoA thiolase OS=Vibrio vulnificus (stra... [more]
FADA_PSEPF1.924e-1832.513-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens... [more]
FADA_PSEF51.924e-1832.513-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens... [more]
FADA_ERWT91.924e-1833.193-ketoacyl-CoA thiolase OS=Erwinia tasmaniensis (s... [more]
FADA_COLP32.513e-1833.333-ketoacyl-CoA thiolase OS=Colwellia psychrerythra... [more]
FADA_PSEAE3.282e-1831.283-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSEAB3.282e-1831.283-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSEA73.282e-1831.283-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_ERWCT5.599e-1833.063-ketoacyl-CoA thiolase OS=Erwinia carotovora subs... [more]

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Properties
Property NameValue
Genbank descriptionC34102B03EF PostHarvP1 Citrus clementina cDNA clone C34102B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931159 ID=FC931159; Name=FC931159; organism=Citrus clementina; type=EST; length=709bp
ACCAATGGGTGGATTTCTTGGTACTCTATCTTCCTTATCTGCTACCAAGC
TTGGATCTATCGCTATTGAAGCTGCTCTTAAGAGAGCAAATGTTGATCCA
TCACTTGTACAAGAAGTTTTCTTTGGTAATGTTCTCAGTGCAAATCTAGG
ACAGGCTCCTGCTAGACAGGCTGCATTGGGTGCAGGAATTCCGAATTCAG
TGGTCTGTACTACTGTTAACAAAGTTTGTGCATCAGGGCTGAAAGCTATA
ATGCTTGCATCACAGAGTATCCAGTTGGGGATCAATGATGTCATTGTGGC
TGGAGGAATGGAAAGCATGTCTAACGCACCTAAATATTTGGCAGAAGCGA
GAAAGGGGTCTCGACTTGGACATGATTCTCTGGTTGATGGAATGCTTAAA
GATGGATTATGGGATGTTTATAATGATTGTAGCATGGGAACTTGTGCTGA
ACTTTGTGCTGAACAACATTCAATAACAAGGGAGAATCAGGATGACTTTG
CTGTTCTGAGCTTTGAGCGTGGTATTGCTGCCCAAGATGCTGGTGCCTTT
GCATGGGAAATTGTTCCAGTTGAAGTTTCTGCGGGAAGGGGAAAACCATC
AACCATTGTTGATAAGGATGAAGGTTTAGGCAAGTTTGACCCGGCAAAAT
TGAGGAAGCTTCGACCAAGTTTCAAGGAGAATGGAGGAACTGTTACGGCT
GGCAATGCC
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