FC931159

Overview
NameFC931159
Unique NameFC931159
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_VIBCH (3-ketoacyl-CoA thiolase OS=Vibrio cholerae GN=fadA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 70/212 (33.02%), Postives = 106/212 (50.00%), Query Frame = 2
Query:   80 KRANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL-GKFDPAKLRKLRPSFKENGGTVTAGNA 709
            +   V+P  ++++++G V      G   AR AAL AG+P  +   TVN++C S ++A+  A+++I +G  ++ + GG+E M + P        G    H  L   + K           MG  AE+  + H I+R+ QD+FA  S  R  AA   G F  EI+P E  A  G   T+ D DE +  +   A L +LRP F    GTVTAG +
Sbjct:   41 RNPQVNPKEIEDIYWGCVQQTLEQGFNVARNAALLAGLPIEIGAVTVNRLCGSSMQALHDAARAIMVGDAEICLVGGVEHMGHVP-----MTHGVDF-HPGLSKNVAKAA-------GMMGLTAEMLGKLHGISRQQQDEFAARSHARAHAATLEGRFKNEILPTEGHAADGTLFTL-DYDEVIRPETTVAGLAELRPVFDPANGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_VIBC3 (3-ketoacyl-CoA thiolase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=fadA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 70/212 (33.02%), Postives = 106/212 (50.00%), Query Frame = 2
Query:   80 KRANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL-GKFDPAKLRKLRPSFKENGGTVTAGNA 709
            +   V+P  ++++++G V      G   AR AAL AG+P  +   TVN++C S ++A+  A+++I +G  ++ + GG+E M + P        G    H  L   + K           MG  AE+  + H I+R+ QD+FA  S  R  AA   G F  EI+P E  A  G   T+ D DE +  +   A L +LRP F    GTVTAG +
Sbjct:   41 RNPQVNPKEIEDIYWGCVQQTLEQGFNVARNAALLAGLPIEIGAVTVNRLCGSSMQALHDAARAIMVGDAEICLVGGVEHMGHVP-----MTHGVDF-HPGLSKNVAKAA-------GMMGLTAEMLGKLHGISRQQQDEFAARSHARAHAATLEGRFKNEILPTEGHAADGTLFTL-DYDEVIRPETTVAGLAELRPVFDPANGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: ECHB_MOUSE (Trifunctional enzyme subunit beta, mitochondrial OS=Mus musculus GN=Hadhb PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 72/236 (30.51%), Postives = 110/236 (46.61%), Query Frame = 2
Query:   50 LGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHDSLVDGMLK--------DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            L   A+   L R N+   +V  + FG V+        AR+AALGAG  +     TV   C S  +A+  A   I  G  DV+VAGG+E MS+ P        K + +  K   LG    +    +          + +   + +MG  A+  A   +++R  QD++A+ S      AQD G  + +IVP +V    GK +  V KD G+      ++ KL+P+F +  GTVTA N+
Sbjct:   80 LARAALSGLLHRTNIPKDVVDYIIFGTVIQEVKTSNVAREAALGAGFSDKTPAHTVTMACISSNQAMTTAVGLIASGQCDVVVAGGVELMSDVPIRHSRNMRKMMLDLNKAKTLGQRLSLLSKFRLNFLSPELPAVAEFSTNETMGHSADRLAAAFAVSRMEQDEYALRSHSLAKKAQDEGHLS-DIVPFKVP---GKDT--VTKDNGIRPSSLEQMAKLKPAFIKPYGTVTAANS 309          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_SERP5 (3-ketoacyl-CoA thiolase OS=Serratia proteamaculans (strain 568) GN=fadA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.629e-17
Identity = 77/233 (33.05%), Postives = 115/233 (49.36%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL-GKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G    + A  L +  + A L R  ++D + + ++++G V      G   AR A+L A IP+SV   TVN++C S ++A+  A+++I +G   V + GG+E M + P        G    H  L   + K           MG  AE+ A+ H+I+R+ QD+FA  S +R  AA  AG F  EI+P       G   T  D DE +  +   A L  LRP+F    GTVTAG +
Sbjct:   20 GAFRQVRAEDLSAHLMRAVLSRNPSLDAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDAARAIMVGDAHVSLIGGVEHMGHVPM-----NHGVDF-HPGLSRSVAKAA-------GMMGLTAEMLAKMHNISRQMQDEFAARSHQRAHAATLAGYFKNEIIPTTGHDADG-VLTRYDFDEVIRPETTVASLAALRPAFDPVNGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_PECCP (3-ketoacyl-CoA thiolase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=fadA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.629e-17
Identity = 78/242 (32.23%), Postives = 114/242 (47.11%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFD----------PAKLRKLRPSFKENGGTVTAGNA 709
            G    + A  L +  + + L R A +D   + ++++G V      G   AR AAL A IP +V  TTVN++C S ++A+  A+++I +G  DV + GG+E M + P        G    H  L   + K           MG  AE+    H+I+RE QD FA  S +R   A  +GAF  EI+P   +AG        D D  L +FD             L  L+P+F    GTVTAG++
Sbjct:   20 GAFRQVRAEDLSAHLMRSLLSRNAALDAREIDDIYWGCVQQTLEQGFNVARNAALLAEIPMNVPATTVNRLCGSSMQALHDAARTIMVGDADVCLIGGVEHMGHVPM-----NHGVDF-HPGLSRTIAKAA-------GMMGLTAEMLGRMHNISREMQDQFAARSHQRAHHATQSGAFRHEIIP---TAGH-------DADGALQRFDYDEVIRPDTTVDSLAALKPAFDPVNGTVTAGSS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_PSEPU (3-ketoacyl-CoA thiolase OS=Pseudomonas putida GN=fadA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.127e-17
Identity = 78/243 (32.10%), Postives = 115/243 (47.33%), Query Frame = 2
Query:    2 PMGGFLGTLS-SLSATKLGSIAIEAALKRAN-VDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            PMG   G +  +  A  + +  I   L+R + VDP  V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+I  G  DV V GG+E M                GH S++ G+  +    L        MG  AE+  + H ITRE QD F V S +    A   G F  EI+P++     G    + D DE +      + L  L+P+F   GGTVTAG +
Sbjct:   17 PMGRSKGGMHRNTRAEDMSAHLISKLLERNDKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTPIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVIGGVEHM----------------GHVSMMHGVDPNPHLSLHAAKASGMMGLTAEMLGKMHGITREQQDLFGVRSHQLAHKATVEGKFKDEIIPMQGYDENGF-LKVFDFDETIRPETTLEGLASLKPAFNPKGGTVTAGTS 242          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_MARMS (3-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain MWYL1) GN=fadA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.127e-17
Identity = 77/236 (32.63%), Postives = 110/236 (46.61%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHD---SLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL-GKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G   ++ A  L +  ++   KR  NVD   V+++ +G V  +   G   AR  +L AG+P +    TVN++C S + AI  A+Q+I  G  DV V GG+E M +          G   G D   +L   M K  +        MG  AE+  + H ++RE+QD FAV S      A   G F  EIV +E     G    +V+ DE +  +     L KL P F    GTVTAG +
Sbjct:   24 GVFRNVRAENLSAALVKELFKRNPNVDQKDVEDLIWGCVNQTLEQGFNMARAVSLLAGLPITCAAQTVNRLCGSSMSAIHTAAQAIMTGQGDVFVVGGVEHMGHV---------GMMHGVDVNPALSKHMAKASM-------MMGVTAEMLGKMHGVSREDQDAFAVRSHRLAHEATLQGRFNNEIVSIEGHDADGN-KILVEVDEVIRPETSMESLAKLAPVFMPKVGTVTAGTS 242          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_IDILO (3-ketoacyl-CoA thiolase OS=Idiomarina loihiensis GN=fadA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.127e-17
Identity = 71/232 (30.60%), Postives = 109/232 (46.98%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G      A  L +  ++  L+R   VDP  ++++++G V      G   AR +AL AGIP+ V   TVN++C S ++A+  A+++I  G  D+ +AGG+E M + P        G    H  +   + K          SMG  AEL + +  ITRE QD+F   S  +   A   G FA EI  +      G+   + + +    +     L +LRP F    GTVTAG +
Sbjct:   20 GVFRHTRAEDLSAALMKGLLERNPEVDPEELEDIYWGCVQQTLEQGFNIARNSALIAGIPHKVAGVTVNRLCGSSMQALHDATRAIMNGDGDIFMAGGVEHMGHVPM-----THGIDF-HPGMNKSVAKAS-------GSMGMTAELLSRKFGITREQQDEFGARSHRKAHEATVEGRFAKEIYAMNGHNADGELVRVTEDEVIRPETTAEGLSQLRPVFDPANGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_PSEU5 (3-ketoacyl-CoA thiolase OS=Pseudomonas stutzeri (strain A1501) GN=fadA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.779e-17
Identity = 77/243 (31.69%), Postives = 114/243 (46.91%), Query Frame = 2
Query:    2 PMGGFLGTLS-SLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            PMG   G +  +  A  + +  I+  L R   +DP+ V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A Q+IQ    DV V GG+E M                GH S++ G+  +    L        MG  AE+  + H ITRE QD F   S +    A   G F  EI+P+E     G    + D DE +      + L +L+P+F   GGTVTAG +
Sbjct:   17 PMGRSKGGMHRNTRAETMSAQLIDGLLARNPKIDPAEVEDVIWGCVNQTLEQGWNIARMASLLTRIPHTSAGQTVSRLCGSSMSALHTAVQAIQTNNGDVFVIGGVEHM----------------GHVSMMHGVDPNPQLSLHAAKASGMMGLTAEMLGKMHGITREAQDQFGYRSHQLAWKATQEGKFKDEIIPMEGHDENGF-LKVFDYDETIRPETTLEGLAELKPAFNPKGGTVTAGTS 242          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_PSEPK (3-ketoacyl-CoA thiolase OS=Pseudomonas putida (strain KT2440) GN=fadA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.779e-17
Identity = 77/243 (31.69%), Postives = 114/243 (46.91%), Query Frame = 2
Query:    2 PMGGFLGTLS-SLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            PMG   G +  +  A  + +  I   L+R   VDP  V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+I  G  DV V GG+E M                GH S++ G+  +    L        MG  AE+  + H ITRE QD F + S +    A   G F  EI+P++     G    + D DE +      + L  L+P+F   GGTVTAG +
Sbjct:   17 PMGRSKGGMHRNTRAEDMSAHLISKLLERNGKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTPIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM----------------GHVSMMHGVDPNPHLSLHAAKASGMMGLTAEMLGKMHGITREQQDLFGLRSHQLAHKATVEGKFKDEIIPMQGYDENGF-LKVFDFDETIRPETTLEGLASLKPAFNPKGGTVTAGTS 242          
The following BLAST results are available for this feature:
BLAST of FC931159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
FADA_VIBCH7.312e-1833.023-ketoacyl-CoA thiolase OS=Vibrio cholerae GN=fadA... [more]
FADA_VIBC37.312e-1833.023-ketoacyl-CoA thiolase OS=Vibrio cholerae serotyp... [more]
ECHB_MOUSE1.247e-1730.51Trifunctional enzyme subunit beta, mitochondrial O... [more]
FADA_SERP51.629e-1733.053-ketoacyl-CoA thiolase OS=Serratia proteamaculans... [more]
FADA_PECCP1.629e-1732.233-ketoacyl-CoA thiolase OS=Pectobacterium carotovo... [more]
FADA_PSEPU2.127e-1732.103-ketoacyl-CoA thiolase OS=Pseudomonas putida GN=f... [more]
FADA_MARMS2.127e-1732.633-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain... [more]
FADA_IDILO2.127e-1730.603-ketoacyl-CoA thiolase OS=Idiomarina loihiensis G... [more]
FADA_PSEU52.779e-1731.693-ketoacyl-CoA thiolase OS=Pseudomonas stutzeri (s... [more]
FADA_PSEPK2.779e-1731.693-ketoacyl-CoA thiolase OS=Pseudomonas putida (str... [more]

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Properties
Property NameValue
Genbank descriptionC34102B03EF PostHarvP1 Citrus clementina cDNA clone C34102B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931159 ID=FC931159; Name=FC931159; organism=Citrus clementina; type=EST; length=709bp
ACCAATGGGTGGATTTCTTGGTACTCTATCTTCCTTATCTGCTACCAAGC
TTGGATCTATCGCTATTGAAGCTGCTCTTAAGAGAGCAAATGTTGATCCA
TCACTTGTACAAGAAGTTTTCTTTGGTAATGTTCTCAGTGCAAATCTAGG
ACAGGCTCCTGCTAGACAGGCTGCATTGGGTGCAGGAATTCCGAATTCAG
TGGTCTGTACTACTGTTAACAAAGTTTGTGCATCAGGGCTGAAAGCTATA
ATGCTTGCATCACAGAGTATCCAGTTGGGGATCAATGATGTCATTGTGGC
TGGAGGAATGGAAAGCATGTCTAACGCACCTAAATATTTGGCAGAAGCGA
GAAAGGGGTCTCGACTTGGACATGATTCTCTGGTTGATGGAATGCTTAAA
GATGGATTATGGGATGTTTATAATGATTGTAGCATGGGAACTTGTGCTGA
ACTTTGTGCTGAACAACATTCAATAACAAGGGAGAATCAGGATGACTTTG
CTGTTCTGAGCTTTGAGCGTGGTATTGCTGCCCAAGATGCTGGTGCCTTT
GCATGGGAAATTGTTCCAGTTGAAGTTTCTGCGGGAAGGGGAAAACCATC
AACCATTGTTGATAAGGATGAAGGTTTAGGCAAGTTTGACCCGGCAAAAT
TGAGGAAGCTTCGACCAAGTTTCAAGGAGAATGGAGGAACTGTTACGGCT
GGCAATGCC
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