FC931159

Overview
NameFC931159
Unique NameFC931159
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_PSEP1 (3-ketoacyl-CoA thiolase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=fadA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.779e-17
Identity = 77/243 (31.69%), Postives = 114/243 (46.91%), Query Frame = 2
Query:    2 PMGGFLGTLS-SLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            PMG   G +  +  A  + +  I   L+R   VDP  V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+I  G  DV V GG+E M                GH S++ G+  +    L        MG  AE+  + H ITRE QD F + S +    A   G F  EI+P++     G    + D DE +      + L  L+P+F   GGTVTAG +
Sbjct:   17 PMGRSKGGMHRNTRAEDMSAHLISKLLERNGKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM----------------GHVSMMHGVDPNPHLSLHAAKASGMMGLTAEMLGKMHGITREQQDLFGLRSHQLAHKATVEGKFKDEIIPMQGYDENGF-LKVFDFDETIRPETTLEGLASLKPAFNPKGGTVTAGTS 242          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_PSEE4 (3-ketoacyl-CoA thiolase OS=Pseudomonas entomophila (strain L48) GN=fadA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.779e-17
Identity = 77/243 (31.69%), Postives = 115/243 (47.33%), Query Frame = 2
Query:    2 PMGGFLGTLS-SLSATKLGSIAIEAALKRAN-VDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            PMG   G +  +  A  + +  I   L+R + +DP  V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+I  G  DV V GG+E M                GH S++ G+  +    L        MG  AE+  + H ITRE QD F V S +    A   G F  EI+P++     G    + D DE +      + L  L+P+F   GGTVTAG +
Sbjct:   17 PMGRSKGGMHRNTRAEDMSAHLISKLLERNDKIDPKEVEDVIWGCVNQTMEQGWNIARMASLMTPIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVIGGVEHM----------------GHVSMMHGVDPNPHLSLHAAKASGMMGLTAEMLGKMHGITREQQDLFGVRSHQLAHKATVEGKFKDEIIPMQGYDENGF-LKVFDFDETIRPETTLEGLASLKPAFNPKGGTVTAGTS 242          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_PSEOL (3-ketoacyl-CoA thiolase OS=Pseudomonas oleovorans GN=fadA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.629e-17
Identity = 77/243 (31.69%), Postives = 115/243 (47.33%), Query Frame = 2
Query:    2 PMGGFLGTLS-SLSATKLGSIAIEAALKRAN-VDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            PMG   G +  +  A  + +  I   L+R + VDP  V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+I  G  DV V GG+E M                GH S++ G+  +    L        MG  AE+  + H ITRE QD F + S +    A   G F  EI+P++     G    + D DE +      + L  L+P+F   GGTVTAG +
Sbjct:   17 PMGRSKGGMHRNTRAEDMSAHLISKLLERNDKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM----------------GHVSMMHGVDPNPHLSLHAAKASGMMGLTAEMLGKMHGITREQQDLFGLRSHQLAHKATVEGKFKDEIIPMQGYDENGF-LKVFDFDETIRPETTLEGLASLKPAFNPKGGTVTAGTS 242          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: YHFS_BACSU (Putative acetyl-CoA C-acetyltransferase yhfS OS=Bacillus subtilis GN=yhfS PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.740e-17
Identity = 68/203 (33.50%), Postives = 97/203 (47.78%), Query Frame = 2
Query:  107 VQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDP--AKLRKLRPSFKENGGTVTAGNA 709
            V EV  GN  +   G   AR +AL AG+P SV   T+++ C SGL+A+  A   IQ G   + +AGG ES S +P +   AR                    D   D  MG  AE  A ++SI+R  QD++A+LS +R   A D G +  E+V +            ++ DE   K  P  A + + +P F  + GTVTA N+
Sbjct:   44 VDEVILGN--ATGRGGNLARLSALQAGLPLSVPGMTIDRQCGSGLEAVRYACSLIQAGAGTMYIAGGSESSSQSP-FSERARFSP-----------------DAIGDPDMGIAAEYTAARYSISRSMQDEYALLSHQRSRNAHDEGFYREEVVALGE----------LETDEAFLKTRPIEAIIPRAKPVFDTSSGTVTAANS 216          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_PSESM (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. tomato GN=fadA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.740e-17
Identity = 77/243 (31.69%), Postives = 115/243 (47.33%), Query Frame = 2
Query:    2 PMGGFLGTLS-SLSATKLGSIAIEAALKRAN-VDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            PMG   G +  +  A  + +  I   L+R N VDP+ V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+I     DV V GG+E M                GH S++ G+  +    L        MG  AE+  + H ITRE QD F + S +    A   G F  EI+P++     G    + D DE +      + L  L+P+F   GGTVTAG +
Sbjct:   17 PMGRSKGGMHRNTRAEDMSAHLISKLLERNNKVDPAEVEDVIWGCVNQTLEQGWNIARMASLLTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTNNGDVFVIGGVEHM----------------GHVSMMHGVDPNPHMSLHAAKASGMMGLTAEMLGKMHGITREQQDAFGLRSHQLAHKATLEGKFKDEIIPMQGYDENGF-LRVFDYDETIRPDTTLESLAALKPAFNPKGGTVTAGTS 242          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_PSE14 (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=fadA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.740e-17
Identity = 77/243 (31.69%), Postives = 115/243 (47.33%), Query Frame = 2
Query:    2 PMGGFLGTLS-SLSATKLGSIAIEAALKRAN-VDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            PMG   G +  +  A  + +  I   L+R N VDP+ V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+I     DV V GG+E M                GH S++ G+  +    L        MG  AE+  + H ITRE QD F + S +    A   G F  EI+P++     G    + D DE +      + L  L+P+F   GGTVTAG +
Sbjct:   17 PMGRSKGGMHRNTRAEDMSAHLISKLLERNNKVDPAEVEDVIWGCVNQTLEQGWNIARMASLLTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTNNGDVFVIGGVEHM----------------GHVSMMHGVDPNPHMSLHAAKASGMMGLTAEMLGKMHGITREQQDAFGLRSHQLAHKATLEGKFKDEIIPMQGYDENGF-LKVFDYDETIRPDTTLESLAALKPAFNPKGGTVTAGTS 242          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_PSEU2 (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=fadA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.190e-17
Identity = 76/243 (31.28%), Postives = 115/243 (47.33%), Query Frame = 2
Query:    2 PMGGFLGTLS-SLSATKLGSIAIEAALKRAN-VDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            PMG   G +  +  A  + +  I   L+R N VDP+ V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A+Q+I     DV + GG+E M                GH S++ G+  +    L        MG  AE+  + H ITRE QD F + S +    A   G F  EI+P++     G    + D DE +      + L  L+P+F   GGTVTAG +
Sbjct:   17 PMGRSKGGMHRNTRAEDMSAHLISKLLERNNKVDPAEVEDVIWGCVNQTLEQGWNIARMASLLTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTNNGDVFIIGGVEHM----------------GHVSMMHGVDPNPHMSLHAAKASGMMGLTAEMLGKMHGITREQQDAFGLRSHQLAHKATLEGKFKDEIIPMQGYDENGF-LKVFDYDETIRPDTTLESLAALKPAFNPKGGTVTAGTS 242          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SERP5 (3-ketoacyl-CoA thiolase OS=Serratia proteamaculans (strain 568) GN=fadI PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.084e-17
Identity = 70/243 (28.81%), Postives = 106/243 (43.62%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHDSLVDGMLK--------DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPS--TIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG  A+   L R  +DP+L++++ FG V+        AR+  LG G+       +V++ CA+  +AI   ++SI  G   + +AGG +S S  P        + L +  K   L     +   LK          + +      MG  AE  A+ H ITRE QD  A  S +    A + G    E++   V   R + S    V KD  L     A   KL+P+F    G+VTA N+
Sbjct:   35 IPAVDLGKTAVSELLARTGIDPALIEQLVFGQVVQMPEAPNIAREIVLGTGMSVHTDAYSVSRACATSFQAIANVAESIMAGSISIGIAGGADSSSVLPIGVSKALARTLVDVNKARTLSQRLKLFSRLKFRDLMPVPPAVAEYSTGLRMGDTAEQMAKSHGITREEQDALAHRSHQLAAKAWEQGLLHDEVMTAYVPPYRTQISEDNNVRKDSSL-----ASYAKLKPAFDRKHGSVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_PSEA6 (3-ketoacyl-CoA thiolase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=fadI PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.084e-17
Identity = 75/257 (29.18%), Postives = 119/257 (46.30%), Query Frame = 2
Query:    2 PMGGFLGTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHDSLVDGMLKDGLWDVY----------NDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLR---KLRPSFKENGGTVTAGNA 709
            P          + A  LG + +   L + NVDP L++++ +G V+        AR+  LG G+       +V++ CA+  ++ +  ++S+ LG   V +AGG +S S +P        + L + +K   LG    V  + K GL D+              SMG  AE  A+ HSI+R +QD  A  S      + + G  A E+    ++A      +  +KD  + +FD +KL    KLRP F +  GTVTA NA
Sbjct:   24 PFAKMATNFHGVPAVDLGKMVVNEMLVKHNVDPLLIEQLVYGQVVQMPEAPNIAREIVLGTGMSVHTDAYSVSRACATSFQSTVNIAESMMLGNISVGIAGGADSTSVSPIGVSKNLARALTDLQKTKTLGQKFNV--LKKLGLKDLLPVPPAVAEYSTGLSMGQTAEQMAKSHSISRADQDKLAHRSHSLAAQSWNEGKLAGEV----MTAYPAPYKSAFEKDNNI-RFD-SKLEGYAKLRPVFDKKHGTVTAANA 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_VIBPA (3-ketoacyl-CoA thiolase OS=Vibrio parahaemolyticus GN=fadA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.084e-17
Identity = 67/212 (31.60%), Postives = 102/212 (48.11%), Query Frame = 2
Query:   80 KRANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            +   V+PS ++++++G V      G   AR AAL AG+P  +   TVN++C S ++A+   +++I  G  ++ + GG+E M + P             + +   GM             MG  AE+  + H I+RE QD+FA  S  R  AA   G F  EI+P E  A  G    + D DE +      + L +LRP F    GTVTAG +
Sbjct:   45 RNPQVNPSEIEDIYWGCVQQTLEQGFNIARNAALLAGLPIEIGAVTVNRLCGSSMQALHDGTRAIMTGDAEICLIGGVEHMGHVPMNHGVDFHPGMSKNVAKAAGM-------------MGLTAEMLGKLHGISREQQDEFAARSHARAHAATLEGRFKNEILPTEGHAADGTLFQL-DYDEVIRPETTVEGLSQLRPVFDPANGTVTAGTS 242          
The following BLAST results are available for this feature:
BLAST of FC931159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
FADA_PSEP12.779e-1731.693-ketoacyl-CoA thiolase OS=Pseudomonas putida (str... [more]
FADA_PSEE42.779e-1731.693-ketoacyl-CoA thiolase OS=Pseudomonas entomophila... [more]
FADA_PSEOL3.629e-1731.693-ketoacyl-CoA thiolase OS=Pseudomonas oleovorans ... [more]
YHFS_BACSU4.740e-1733.50Putative acetyl-CoA C-acetyltransferase yhfS OS=Ba... [more]
FADA_PSESM4.740e-1731.693-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
FADA_PSE144.740e-1731.693-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
FADA_PSEU26.190e-1731.283-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
FADI_SERP58.084e-1728.813-ketoacyl-CoA thiolase OS=Serratia proteamaculans... [more]
FADI_PSEA68.084e-1729.183-ketoacyl-CoA thiolase OS=Pseudoalteromonas atlan... [more]
FADA_VIBPA8.084e-1731.603-ketoacyl-CoA thiolase OS=Vibrio parahaemolyticus... [more]

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Properties
Property NameValue
Genbank descriptionC34102B03EF PostHarvP1 Citrus clementina cDNA clone C34102B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931159 ID=FC931159; Name=FC931159; organism=Citrus clementina; type=EST; length=709bp
ACCAATGGGTGGATTTCTTGGTACTCTATCTTCCTTATCTGCTACCAAGC
TTGGATCTATCGCTATTGAAGCTGCTCTTAAGAGAGCAAATGTTGATCCA
TCACTTGTACAAGAAGTTTTCTTTGGTAATGTTCTCAGTGCAAATCTAGG
ACAGGCTCCTGCTAGACAGGCTGCATTGGGTGCAGGAATTCCGAATTCAG
TGGTCTGTACTACTGTTAACAAAGTTTGTGCATCAGGGCTGAAAGCTATA
ATGCTTGCATCACAGAGTATCCAGTTGGGGATCAATGATGTCATTGTGGC
TGGAGGAATGGAAAGCATGTCTAACGCACCTAAATATTTGGCAGAAGCGA
GAAAGGGGTCTCGACTTGGACATGATTCTCTGGTTGATGGAATGCTTAAA
GATGGATTATGGGATGTTTATAATGATTGTAGCATGGGAACTTGTGCTGA
ACTTTGTGCTGAACAACATTCAATAACAAGGGAGAATCAGGATGACTTTG
CTGTTCTGAGCTTTGAGCGTGGTATTGCTGCCCAAGATGCTGGTGCCTTT
GCATGGGAAATTGTTCCAGTTGAAGTTTCTGCGGGAAGGGGAAAACCATC
AACCATTGTTGATAAGGATGAAGGTTTAGGCAAGTTTGACCCGGCAAAAT
TGAGGAAGCTTCGACCAAGTTTCAAGGAGAATGGAGGAACTGTTACGGCT
GGCAATGCC
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