FC931159

Overview
NameFC931159
Unique NameFC931159
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_ENTS8 (3-ketoacyl-CoA thiolase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=fadA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.084e-17
Identity = 75/233 (32.19%), Postives = 109/233 (46.78%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            G    + A  L +  + + L R   ++ S + ++++G V      G   AR AAL A IP+SV   TVN++C S ++A+  A++ I  G   V + GG+E M + P        G    H  L   + K           MG  AE+ +  H I+RE QD FA  S +R  AA  AG F  EI+P       G      D DE +     A+ L +L+P+F    GTVTAG +
Sbjct:   20 GAFRQVRAEDLSAHLMRSLLSRNPQLEASAIDDIYWGCVQQTLEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDASVCLVGGVEHMGHVP-----MNHGVDF-HPGLSRNVAKAA-------GMMGLTAEMLSRMHGISREMQDAFAARSHQRAWAATQAGHFKQEIIPTSGHDADGVLKR-YDFDEVIRPETTAEGLSQLKPAFDPANGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_PSYCK (3-ketoacyl-CoA thiolase OS=Psychrobacter cryohalolentis (strain K5) GN=fadA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.056e-16
Identity = 71/236 (30.08%), Postives = 111/236 (47.03%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGM-LKDGLWDVYNDCS--MGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVE--VSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G    + A  + +  + A ++R + DP  V+++ +G V  +   G    R   L AGIP +    T+N++C S ++A+  A+  I  G  DV + GG+E M                GH  ++ G+ L       Y   S  MG  AE+    ++ITRE QD F + S  R  AA   G F  EI+ +E    AGR +  T+ +        +  +++KLRP+F   GGTVTA  +
Sbjct:   25 GMFRHVRADSMSAELVRALVERNDFDPRDVEDIIWGCVNQTLEQGLNIGRNIGLLAGIPKTAGGQTINRLCGSSMQALHTAAAQIMTGQGDVFIIGGVEHM----------------GHVGMMHGVDLNPEASKHYAKASNMMGLTAEMLGRMNNITREEQDAFGLESHRRAWAATTEGRFDNEIIGIEGHDEAGRLQLCTVDEVIRPDATME--QMQKLRPAFDPVGGTVTAATS 242          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_PSEMY (3-ketoacyl-CoA thiolase OS=Pseudomonas mendocina (strain ymp) GN=fadA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.056e-16
Identity = 76/243 (31.28%), Postives = 114/243 (46.91%), Query Frame = 2
Query:    2 PMGGFLGTLS-SLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKD---GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL-GKFDPAKLRKLRPSFKENGGTVTAGNA 709
            PMG   G +  +  A  + +  I   L+R A +DP+ V++V +G V  +   G   AR A+L   IP++    TV+++C S + A+  A Q+IQ G  DV V GG+E M                GH  ++ G+  +    L+       MG  AE+  + H I+RE QD F   S      A   G F  EI+P++     G    + D DE +  +     L  L+P+F   GGTVTAG +
Sbjct:   17 PMGRSKGGMHRNTRAETMSAHLISKVLERNAKIDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAGQTVSRLCGSSMSALHTAVQAIQTGNGDVFVVGGVEHM----------------GHVGMMHGVDPNPHLSLYAAKASGMMGLTAEMLGKMHGISREAQDAFGERSHRLAHKATVEGKFKDEIIPMQGYDENGF-LKVFDYDETIRPETTLESLATLKPAFNPKGGTVTAGTS 242          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: ECHB_BOVIN (Trifunctional enzyme subunit beta, mitochondrial OS=Bos taurus GN=HADHB PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.056e-16
Identity = 71/236 (30.08%), Postives = 108/236 (45.76%), Query Frame = 2
Query:   50 LGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHDSLVDGMLK--------DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            L   A+   L R +V   +V  + FG V+        AR+AALGAG  +     TV   C S  +A+  A   I  G  DV+VAGG+E MS+ P        K + +  K   L     +    +          + +     +MG  A+  A   +I+RE QD++A+ S      AQD G  + ++VP +V  GR      V +D G+      ++ KL+P+F +  GTVTA N+
Sbjct:   80 LARAALSGLLHRTSVPKDVVDYIIFGTVIQEVKTSNVAREAALGAGFSDKTPAHTVTMACISSNQAMTTAVGLIASGQCDVVVAGGVELMSDIPIRHSRKMRKMMLDLNKAKTLAQRLSIISKFRLNFLSPELPAVSEFSTSETMGHSADRLAAAFAISREEQDEYALRSHSLAKKAQDEGLLS-DVVPFKV-PGR----DTVTQDNGIRPSSLDQMAKLKPAFIKPYGTVTAANS 309          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_VIBF1 (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadI PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.801e-16
Identity = 76/247 (30.77%), Postives = 111/247 (44.94%), Query Frame = 2
Query:   29 SSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP----KYLAEA-----------RKGSRLGHDSLVD-GMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWE--IVPVEVSAGRGKPSTI-VDKDEGL-GKFDPAKLRKLRPSFKENGGTVTAGNA 709
            S+  A  LG +A++A + + ++DP L+ +V FG V+        AR+  LG G+       +V + CA+  +      +SI  G  D+ +AGG +S S  P    K LA             +K S L   SL D   +   + +     SMG  AE  A+ H ITRE QD  A  S           A AW+  ++  EV     +P T  +D D  +    D A   KLRP+F    G+VTA N+
Sbjct:   39 STTPAVDLGKLAVKALMDKTDIDPKLIDQVVFGQVVQMPEAPNIAREIVLGTGMNIGTDAYSVTRACATSFQTTANVVESIMAGTIDIGIAGGADSSSVLPIGVSKKLASTLLALSKTKTVYQKLSLLRTLSLKDIAPVPPAVAEYSTGISMGQTAEQMAKSHGITREEQDALAHRS-------HTLAAKAWKDGLIQDEVMTAFPEPYTAWLDHDNNIRHDSDLASYAKLRPAFDHKYGSVTAANS 278          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: ECHB_RAT (Trifunctional enzyme subunit beta, mitochondrial OS=Rattus norvegicus GN=Hadhb PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.801e-16
Identity = 74/236 (31.36%), Postives = 110/236 (46.61%), Query Frame = 2
Query:   50 LGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHD-SLVDGMLKDGLW-------DVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            L   A+   L R N+   +V  + FG V+        AR+AALGAG  +     TV   C S  +A+  A   I  G  DV+VAGG+E MS+ P        K + +  K   L    SL+     + L        +   + +MG  A+  A   +++R  QD +A+ S      AQD G  + +IVP +V    GK +  V KD G+      ++ KL+P+F +  GTVTA N+
Sbjct:   80 LARAALSGLLYRTNIPKDVVDYIIFGTVIQEVKTSNVAREAALGAGFSDKTPAHTVTMACISSNQAMTTAVGLIASGQCDVVVAGGVELMSDVPIRHSRNMRKMMLDLNKAKTLAQRLSLLTKFRLNFLSPELPAVAEFSTNETMGHSADRLAAAFAVSRMEQDKYALRSHSLAKKAQDEGHLS-DIVPFKVP---GKDT--VSKDNGIRPSSLEQMAKLKPAFIKPYGTVTAANS 309          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: ECHB_PANTR (Trifunctional enzyme subunit beta, mitochondrial OS=Pan troglodytes GN=HADHB PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.352e-16
Identity = 70/236 (29.66%), Postives = 108/236 (45.76%), Query Frame = 2
Query:   50 LGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHDSLVDGMLK--------DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            L   A+   L R +V   +V  + FG V+        AR+AALGAG  +     TV   C S  +A+      I  G  DVIVAGG+E MS+ P        K + +  K   +G    +    +          + +     +MG  A+  A   +++R  QD++A+ S      AQD G  + ++VP +V    GK +  V KD G+      ++ KL+P+F +  GTVTA N+
Sbjct:   80 LARAALTGLLHRTSVPKEVVDYIIFGTVIQEVKTSNVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVIVAGGVELMSDVPIRHSRKMRKLMLDLNKAKSMGQRLSLISKFRFNFLAPELPAVSEFSTSETMGHSADRLAAAFAVSRLEQDEYALRSHSLAKKAQDEGLLS-DVVPFKVP---GKDT--VTKDNGIRPSSLEQMAKLKPAFIKPYGTVTAANS 309          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: ECHB_HUMAN (Trifunctional enzyme subunit beta, mitochondrial OS=Homo sapiens GN=HADHB PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.352e-16
Identity = 70/236 (29.66%), Postives = 108/236 (45.76%), Query Frame = 2
Query:   50 LGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHDSLVDGMLK--------DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            L   A+   L R +V   +V  + FG V+        AR+AALGAG  +     TV   C S  +A+      I  G  DVIVAGG+E MS+ P        K + +  K   +G    +    +          + +     +MG  A+  A   +++R  QD++A+ S      AQD G  + ++VP +V    GK +  V KD G+      ++ KL+P+F +  GTVTA N+
Sbjct:   79 LARAALTGLLHRTSVPKEVVDYIIFGTVIQEVKTSNVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVIVAGGVELMSDVPIRHSRKMRKLMLDLNKAKSMGQRLSLISKFRFNFLAPELPAVSEFSTSETMGHSADRLAAAFAVSRLEQDEYALRSHSLAKKAQDEGLLS-DVVPFKVP---GKDT--VTKDNGIRPSSLEQMAKLKPAFIKPYGTVTAANS 308          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_AERS4 (3-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (strain A449) GN=fadI PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.072e-16
Identity = 69/240 (28.75%), Postives = 107/240 (44.58%), Query Frame = 2
Query:   41 ATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGH--DSLVDGMLKD------GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGK-FDPAKLRKLRPSFKENGGTVTAGNA 709
            A  LG + +   L R ++DP L+ ++ FG V+        AR+  LG G+  +    +V++ CA+  +A+   ++SI  G  D+ +AGG +S S  P        + L +  K   L    + L    LKD       + +     SMG  AE  A+ H I+RE QD  A  S      A   G  + E+    V   +      +++D  + +  D A   KL+P F    GTVTA NA
Sbjct:   37 AVDLGKLVVSELLARTSLDPKLIDQLVFGQVVQMPEAPNIAREIVLGTGMSVTTDAYSVSRACATSFQAVANVTESIMAGTVDIAIAGGADSSSVLPIGVSKKLARALVDLNKARNLQQRFNILRALRLKDLMPVPPAVAEYSTGLSMGQTAEQMAKSHQISREAQDALAHRSHTLAAQAWADGKLSGEVFTAHVPPYKSP----LERDNNIRESSDLASYAKLKPVFDRVHGTVTAANA 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_PSYA2 (3-ketoacyl-CoA thiolase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.072e-16
Identity = 68/234 (29.06%), Postives = 105/234 (44.87%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNV-LSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGM-LKDGLWDVYNDCS--MGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G    + A  + +  + A ++R + DP  V+++ +G V  +   G    R   L AGIP +    TVN++C S ++A+  A+  I  G  DV + GG+E M                GH  ++ G+ L       Y   S  MG  AE+    ++ITRE QD F + S  R  AA   G F  EI+ +E     G+       +         +++KLRP+F    GTVTA  +
Sbjct:   25 GMFRHVRADSMSAELVRALVERNDFDPRDVEDIIWGCVNQTLEQGLNIGRNIGLLAGIPKTAGGQTVNRLCGSSMQALHTAAAQIMTGQGDVFIIGGVEHM----------------GHVGMMHGIDLNPEASKHYAKASNMMGLTAEMLGRMNNITREEQDAFGLESHRRAWAATTEGRFDNEIIGIEGHDAAGRLQLCTVDEVIRPDATMEQMQKLRPAFDPVSGTVTAATS 242          
The following BLAST results are available for this feature:
BLAST of FC931159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
FADA_ENTS88.084e-1732.193-ketoacyl-CoA thiolase OS=Enterobacter sakazakii ... [more]
FADA_PSYCK1.056e-1630.083-ketoacyl-CoA thiolase OS=Psychrobacter cryohalol... [more]
FADA_PSEMY1.056e-1631.283-ketoacyl-CoA thiolase OS=Pseudomonas mendocina (... [more]
ECHB_BOVIN1.056e-1630.08Trifunctional enzyme subunit beta, mitochondrial O... [more]
FADI_VIBF11.801e-1630.773-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
ECHB_RAT1.801e-1631.36Trifunctional enzyme subunit beta, mitochondrial O... [more]
ECHB_PANTR2.352e-1629.66Trifunctional enzyme subunit beta, mitochondrial O... [more]
ECHB_HUMAN2.352e-1629.66Trifunctional enzyme subunit beta, mitochondrial O... [more]
FADI_AERS43.072e-1628.753-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (... [more]
FADA_PSYA23.072e-1629.063-ketoacyl-CoA thiolase OS=Psychrobacter arcticus ... [more]

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Properties
Property NameValue
Genbank descriptionC34102B03EF PostHarvP1 Citrus clementina cDNA clone C34102B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931159 ID=FC931159; Name=FC931159; organism=Citrus clementina; type=EST; length=709bp
ACCAATGGGTGGATTTCTTGGTACTCTATCTTCCTTATCTGCTACCAAGC
TTGGATCTATCGCTATTGAAGCTGCTCTTAAGAGAGCAAATGTTGATCCA
TCACTTGTACAAGAAGTTTTCTTTGGTAATGTTCTCAGTGCAAATCTAGG
ACAGGCTCCTGCTAGACAGGCTGCATTGGGTGCAGGAATTCCGAATTCAG
TGGTCTGTACTACTGTTAACAAAGTTTGTGCATCAGGGCTGAAAGCTATA
ATGCTTGCATCACAGAGTATCCAGTTGGGGATCAATGATGTCATTGTGGC
TGGAGGAATGGAAAGCATGTCTAACGCACCTAAATATTTGGCAGAAGCGA
GAAAGGGGTCTCGACTTGGACATGATTCTCTGGTTGATGGAATGCTTAAA
GATGGATTATGGGATGTTTATAATGATTGTAGCATGGGAACTTGTGCTGA
ACTTTGTGCTGAACAACATTCAATAACAAGGGAGAATCAGGATGACTTTG
CTGTTCTGAGCTTTGAGCGTGGTATTGCTGCCCAAGATGCTGGTGCCTTT
GCATGGGAAATTGTTCCAGTTGAAGTTTCTGCGGGAAGGGGAAAACCATC
AACCATTGTTGATAAGGATGAAGGTTTAGGCAAGTTTGACCCGGCAAAAT
TGAGGAAGCTTCGACCAAGTTTCAAGGAGAATGGAGGAACTGTTACGGCT
GGCAATGCC
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