FC931159

Overview
NameFC931159
Unique NameFC931159
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: ECHB_MACFA (Trifunctional enzyme subunit beta, mitochondrial OS=Macaca fascicularis GN=HADHB PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.072e-16
Identity = 72/236 (30.51%), Postives = 109/236 (46.19%), Query Frame = 2
Query:   50 LGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHD-SLVDGMLKD-------GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            L   A+   L R +V   +V  + FG V+        AR+AALGAG  +     TV   C S  +A+      I  G  DVIVAGG+E MS+ P        K + +  K   +G   SL+     +        + +     +MG  A+  A   +++R  QD++A+ S      AQD G  + ++VP  V    GK +  V KD G+      ++ KL+P+F +  GTVTA N+
Sbjct:   80 LARAALTGLLHRTSVPKEVVDYIIFGTVIQEVKTSNVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVIVAGGVELMSDIPIRHSRKMRKLMLDLNKAKSMGQRLSLISKFRLNFLAPELPAVAEFSTSETMGHSADRLAAAFAVSRLEQDEYALRSHSLAKKAQDEGLLS-DVVPFRVP---GKDT--VTKDNGIRPSSLEQMAKLKPAFIKPYGTVTAANS 309          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_VIBFM (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain MJ11) GN=fadI PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.240e-16
Identity = 74/247 (29.96%), Postives = 111/247 (44.94%), Query Frame = 2
Query:   29 SSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP----KYLAEA-----------RKGSRLGHDSLVD-GMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWE--IVPVEVSAGRGKPSTI-VDKDEGL-GKFDPAKLRKLRPSFKENGGTVTAGNA 709
            S+  A  LG + ++A + + ++DP L+ +V FG V+        AR+  LG G+       +V + CA+  +      +SI  G  D+ +AGG +S S  P    K LA             +K S L   SL D   +   + +     SMG  AE  A+ H ITRE QD  A  S           A AW+  ++  EV     +P T+ +D D  +    + A   KLRP+F    G+VTA N+
Sbjct:   39 STTPAVDLGKLTVKALMDKTDIDPKLIDQVVFGQVVQMPEAPNIAREIVLGTGMNIGTDAYSVTRACATSFQTTANVVESIMAGTIDIGIAGGADSSSVLPIGVSKKLASTLLALSKTKTVYQKLSLLRTLSLKDIAPVPPAVAEYSTGISMGQTAEQMAKSHGITREEQDALAHRS-------HTLAAKAWKDGLIQDEVMTAFPEPYTVWLDHDNNIRHDSELASYAKLRPAFDRKYGSVTAANS 278          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_AERHH (3-ketoacyl-CoA thiolase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadI PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.240e-16
Identity = 68/240 (28.33%), Postives = 107/240 (44.58%), Query Frame = 2
Query:   41 ATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGH--DSLVDGMLKD------GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGK-FDPAKLRKLRPSFKENGGTVTAGNA 709
            A  LG + +   L R ++DP L+ ++ FG V+        AR+  LG G+  S    +V++ CA+  +A+   ++SI  G  D+ +AGG +S S  P        + L +  K   L    + L    +KD       + +     SMG  AE  A+ H I+RE QD  A  S      A   G  + E+    V   +      +++D  + +  D A   KL+P F    G+VTA NA
Sbjct:   37 AVDLGKLVVSEMLARTDLDPKLIDQLVFGQVVQMPEAPNIAREIVLGTGMSVSTDAYSVSRACATSFQAVANVTESIMAGTVDIAIAGGADSSSVLPIGVSKKLARALVDLNKARNLQQRFNILRQLRVKDLLPVPPAVAEYSTGLSMGQTAEQMAKSHQISREAQDALAHRSHTLAAQAWADGKLSGEVFTAHVPPYKAP----LERDNNIRESSDLASYAKLKPVFDRVHGSVTAANA 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_YERPS (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis GN=fadA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.844e-16
Identity = 72/233 (30.90%), Postives = 114/233 (48.93%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL-GKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G    + A  L +  + A + R   ++ + + ++++G V      G   AR A+L A IP+SV   TVN++C S ++A+   +++I +G   + + GG+E M + P           + H   VD     G         MG  AE+ A+ H+I+R++QD+FA  S +R  AA  AG FA EIV        G      D DE +  + + + L  LRP+F    GTVTAG +
Sbjct:   20 GAFRHVRAEDLSAHLMRAVISRNPGLNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAKISLIGGVEHMGHVP-----------MNHG--VDFHPGMGRTVAKAAGMMGLTAEMLAKIHNISRQSQDEFAFRSHQRAYAATQAGHFAKEIVATNGHDAEGVLKRF-DFDEVIRPETNLSGLAALRPAFDPVNGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_YERPP (3-ketoacyl-CoA thiolase OS=Yersinia pestis (strain Pestoides F) GN=fadA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.844e-16
Identity = 72/233 (30.90%), Postives = 114/233 (48.93%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL-GKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G    + A  L +  + A + R   ++ + + ++++G V      G   AR A+L A IP+SV   TVN++C S ++A+   +++I +G   + + GG+E M + P           + H   VD     G         MG  AE+ A+ H+I+R++QD+FA  S +R  AA  AG FA EIV        G      D DE +  + + + L  LRP+F    GTVTAG +
Sbjct:   20 GAFRHVRAEDLSAHLMRAVISRNPGLNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAKISLIGGVEHMGHVP-----------MNHG--VDFHPGMGRTVAKAAGMMGLTAEMLAKIHNISRQSQDEFAFRSHQRAYAATQAGHFAKEIVATNGHDAEGVLKRF-DFDEVIRPETNLSGLAALRPAFDPVNGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_YERPN (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fadA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.844e-16
Identity = 72/233 (30.90%), Postives = 114/233 (48.93%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL-GKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G    + A  L +  + A + R   ++ + + ++++G V      G   AR A+L A IP+SV   TVN++C S ++A+   +++I +G   + + GG+E M + P           + H   VD     G         MG  AE+ A+ H+I+R++QD+FA  S +R  AA  AG FA EIV        G      D DE +  + + + L  LRP+F    GTVTAG +
Sbjct:   20 GAFRHVRAEDLSAHLMRAVISRNPGLNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAKISLIGGVEHMGHVP-----------MNHG--VDFHPGMGRTVAKAAGMMGLTAEMLAKIHNISRQSQDEFAFRSHQRAYAATQAGHFAKEIVATNGHDAEGVLKRF-DFDEVIRPETNLSGLAALRPAFDPVNGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_YERPE (3-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.844e-16
Identity = 72/233 (30.90%), Postives = 114/233 (48.93%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL-GKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G    + A  L +  + A + R   ++ + + ++++G V      G   AR A+L A IP+SV   TVN++C S ++A+   +++I +G   + + GG+E M + P           + H   VD     G         MG  AE+ A+ H+I+R++QD+FA  S +R  AA  AG FA EIV        G      D DE +  + + + L  LRP+F    GTVTAG +
Sbjct:   20 GAFRHVRAEDLSAHLMRAVISRNPGLNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAKISLIGGVEHMGHVP-----------MNHG--VDFHPGMGRTVAKAAGMMGLTAEMLAKIHNISRQSQDEFAFRSHQRAYAATQAGHFAKEIVATNGHDAEGVLKRF-DFDEVIRPETNLSGLAALRPAFDPVNGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_YERPA (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fadA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.844e-16
Identity = 72/233 (30.90%), Postives = 114/233 (48.93%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL-GKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G    + A  L +  + A + R   ++ + + ++++G V      G   AR A+L A IP+SV   TVN++C S ++A+   +++I +G   + + GG+E M + P           + H   VD     G         MG  AE+ A+ H+I+R++QD+FA  S +R  AA  AG FA EIV        G      D DE +  + + + L  LRP+F    GTVTAG +
Sbjct:   20 GAFRHVRAEDLSAHLMRAVISRNPGLNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAKISLIGGVEHMGHVP-----------MNHG--VDFHPGMGRTVAKAAGMMGLTAEMLAKIHNISRQSQDEFAFRSHQRAYAATQAGHFAKEIVATNGHDAEGVLKRF-DFDEVIRPETNLSGLAALRPAFDPVNGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_YERP3 (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fadA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.844e-16
Identity = 72/233 (30.90%), Postives = 114/233 (48.93%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL-GKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G    + A  L +  + A + R   ++ + + ++++G V      G   AR A+L A IP+SV   TVN++C S ++A+   +++I +G   + + GG+E M + P           + H   VD     G         MG  AE+ A+ H+I+R++QD+FA  S +R  AA  AG FA EIV        G      D DE +  + + + L  LRP+F    GTVTAG +
Sbjct:   20 GAFRHVRAEDLSAHLMRAVISRNPGLNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAKISLIGGVEHMGHVP-----------MNHG--VDFHPGMGRTVAKAAGMMGLTAEMLAKIHNISRQSQDEFAFRSHQRAYAATQAGHFAKEIVATNGHDAEGVLKRF-DFDEVIRPETNLSGLAALRPAFDPVNGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_PSEHT (3-ketoacyl-CoA thiolase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=fadI PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16
Identity = 67/240 (27.92%), Postives = 107/240 (44.58%), Query Frame = 2
Query:   41 ATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHDSLVDGMLK--------DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            A  +G + +   L+R N + S + ++ FG V+        AR+  LG G+P SV   +V++ CA+  +AI   ++SI  G   V +AGG +S S  P          L +  K   LG    +   L+          + +     SMG  AE  A+ H+I+RE+QD  A  S      A   G    E++   +   +    + +++D  + K    +   KL+P F    GTVTA NA
Sbjct:   37 ALDMGKLVVNEMLERLNFNKSEIDQLVFGQVVQMPEAPNIAREIVLGTGMPVSVDAYSVSRACATSFQAIANVAESIMAGSVTVGIAGGADSSSVLPIGVSKKLAGSLVDLNKARTLGQRLKIFSKLRLKDLLPVPPAVAEYSTGLSMGQTAEQMAKTHNISREDQDALAHRSHSLATQAWADGKLKDEVMTAHLPPYK----SFIEEDNNIRKNSTVEGYAKLKPVFDRQHGTVTAANA 272          
The following BLAST results are available for this feature:
BLAST of FC931159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
ECHB_MACFA3.072e-1630.51Trifunctional enzyme subunit beta, mitochondrial O... [more]
FADI_VIBFM5.240e-1629.963-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADI_AERHH5.240e-1628.333-ketoacyl-CoA thiolase OS=Aeromonas hydrophila su... [more]
FADA_YERPS6.844e-1630.903-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]
FADA_YERPP6.844e-1630.903-ketoacyl-CoA thiolase OS=Yersinia pestis (strain... [more]
FADA_YERPN6.844e-1630.903-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant... [more]
FADA_YERPE6.844e-1630.903-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadA... [more]
FADA_YERPA6.844e-1630.903-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant... [more]
FADA_YERP36.844e-1630.903-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]
FADI_PSEHT8.938e-1627.923-ketoacyl-CoA thiolase OS=Pseudoalteromonas halop... [more]

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Properties
Property NameValue
Genbank descriptionC34102B03EF PostHarvP1 Citrus clementina cDNA clone C34102B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931159 ID=FC931159; Name=FC931159; organism=Citrus clementina; type=EST; length=709bp
ACCAATGGGTGGATTTCTTGGTACTCTATCTTCCTTATCTGCTACCAAGC
TTGGATCTATCGCTATTGAAGCTGCTCTTAAGAGAGCAAATGTTGATCCA
TCACTTGTACAAGAAGTTTTCTTTGGTAATGTTCTCAGTGCAAATCTAGG
ACAGGCTCCTGCTAGACAGGCTGCATTGGGTGCAGGAATTCCGAATTCAG
TGGTCTGTACTACTGTTAACAAAGTTTGTGCATCAGGGCTGAAAGCTATA
ATGCTTGCATCACAGAGTATCCAGTTGGGGATCAATGATGTCATTGTGGC
TGGAGGAATGGAAAGCATGTCTAACGCACCTAAATATTTGGCAGAAGCGA
GAAAGGGGTCTCGACTTGGACATGATTCTCTGGTTGATGGAATGCTTAAA
GATGGATTATGGGATGTTTATAATGATTGTAGCATGGGAACTTGTGCTGA
ACTTTGTGCTGAACAACATTCAATAACAAGGGAGAATCAGGATGACTTTG
CTGTTCTGAGCTTTGAGCGTGGTATTGCTGCCCAAGATGCTGGTGCCTTT
GCATGGGAAATTGTTCCAGTTGAAGTTTCTGCGGGAAGGGGAAAACCATC
AACCATTGTTGATAAGGATGAAGGTTTAGGCAAGTTTGACCCGGCAAAAT
TGAGGAAGCTTCGACCAAGTTTCAAGGAGAATGGAGGAACTGTTACGGCT
GGCAATGCC
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