FC931159

Overview
NameFC931159
Unique NameFC931159
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_ESCF3 (3-ketoacyl-CoA thiolase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=fadA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 68/232 (29.31%), Postives = 104/232 (44.83%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G   ++ A  L +  + + L R   ++ + + ++++G V      G   AR AAL A +P+SV   TVN++C S ++A+  A++ I  G     + GG+E M + P             + +   GM             MG  AE+ A  H I+RE QD FA  S  R  AA  +GAF  EI+P       G        +    +     L  LRP+F    GTVTAG++
Sbjct:   20 GAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGM-------------MGLTAEMLARMHGISREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTMEALATLRPAFDPVSGTVTAGSS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_ECOL6 (3-ketoacyl-CoA thiolase OS=Escherichia coli O6 GN=fadA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 71/243 (29.22%), Postives = 106/243 (43.62%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRG-----------KPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G   ++ A  L +  + + L R   ++ + + ++++G V      G   AR AAL A +P+SV   TVN++C S ++A+  A++ I  G     + GG+E M + P             + +   GM             MG  AE+ A  H I+RE QD FA  S  R  AA  +GAF  EI+P       G           +P T V+            L  LRP+F    GTVTAG +
Sbjct:   20 GAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGM-------------MGLTAEMLARMHGISREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVE-----------ALATLRPAFDPVSGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_ECOL5 (3-ketoacyl-CoA thiolase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=fadA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 71/243 (29.22%), Postives = 106/243 (43.62%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRG-----------KPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G   ++ A  L +  + + L R   ++ + + ++++G V      G   AR AAL A +P+SV   TVN++C S ++A+  A++ I  G     + GG+E M + P             + +   GM             MG  AE+ A  H I+RE QD FA  S  R  AA  +GAF  EI+P       G           +P T V+            L  LRP+F    GTVTAG +
Sbjct:   20 GAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGM-------------MGLTAEMLARMHGISREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVE-----------ALATLRPAFDPVSGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_ECOK1 (3-ketoacyl-CoA thiolase OS=Escherichia coli O1:K1 / APEC GN=fadA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 71/243 (29.22%), Postives = 106/243 (43.62%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRG-----------KPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G   ++ A  L +  + + L R   ++ + + ++++G V      G   AR AAL A +P+SV   TVN++C S ++A+  A++ I  G     + GG+E M + P             + +   GM             MG  AE+ A  H I+RE QD FA  S  R  AA  +GAF  EI+P       G           +P T V+            L  LRP+F    GTVTAG +
Sbjct:   20 GAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGM-------------MGLTAEMLARMHGISREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVE-----------ALATLRPAFDPVSGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_ECO57 (3-ketoacyl-CoA thiolase OS=Escherichia coli O157:H7 GN=fadA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 71/243 (29.22%), Postives = 106/243 (43.62%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRG-----------KPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G   ++ A  L +  + + L R   ++ + + ++++G V      G   AR AAL A +P+SV   TVN++C S ++A+  A++ I  G     + GG+E M + P             + +   GM             MG  AE+ A  H I+RE QD FA  S  R  AA  +GAF  EI+P       G           +P T V+            L  LRP+F    GTVTAG +
Sbjct:   20 GAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGM-------------MGLTAEMLARMHGISREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVE-----------ALATLRPAFDPVNGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SHEAM (3-ketoacyl-CoA thiolase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=fadI PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 71/243 (29.22%), Postives = 114/243 (46.91%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP----KYLAEA----RKGSRLGHDSLVDGML--KD------GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKP-STIVDKDEGLGK-FDPAKLRKLRPSFKENGGTVTAGNA 709
            +SA  +G + +   L R+ +DP LV+++ +G V+        AR+  LG G+  +    +V + CA+  ++ +  ++SI  G  ++ +AGG +S S  P    K LA A     K    G    +   L  KD       + +     SMG  AE  A+ H I+R +QD  A  S    +AAQ    +A  ++  EV      P +  ++KD  + +  D A   KLRP F    G+VTA N+
Sbjct:   35 VSALDMGKMVVNELLSRSELDPKLVEQLVYGQVVQMPAAPNIAREIVLGTGMNVATDAYSVTRACATSFQSTVNIAESIMTGNIEIGIAGGADSSSVLPIGVSKKLAHALVDLTKARTFGQKLAIFRRLGIKDLLPVPPAVAEYSTGLSMGQTAEQMAKTHGISRADQDAMAHRS--HTLAAQ---TWASGVMKNEVMVAHVPPYNQFIEKDNNIRESSDLASYAKLRPVFDRKHGSVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_ESCF3 (3-ketoacyl-CoA thiolase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=fadI PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 63/244 (25.82%), Postives = 105/244 (43.03%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLG-----------HDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R+ + P+ ++++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++S+  G     +AGG +S S  P        + L +  K   LG           HD L    +   + +      MG  AE  A+ + ITRE QD  A  S +R   A   G    E++   V   +   + + + +   G    A   +LRP+F    GTVTA N+
Sbjct:   35 IPAVDLGKMVVSELLARSEIPPAAIEQLVFGQVVQMPEAPNIAREIVLGTGMSVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKKLARVLVDVNKARTLGQRLKLFSRLRLHDLL---PVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWSEGKLTNEVMTAYVPPYK---APLSEDNNIRGNSTLADYARLRPAFDRKHGTVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_ECO24 (3-ketoacyl-CoA thiolase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=fadA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 71/243 (29.22%), Postives = 106/243 (43.62%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRG-----------KPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G   ++ A  L +  + + L R   ++ + + ++++G V      G   AR AAL A +P+SV   TVN++C S ++A+  A++ I  G     + GG+E M + P             + +   GM             MG  AE+ A  H I+RE QD FA  S  R  AA  +GAF  EI+P       G           +P T V+            L  LRP+F    GTVTAG +
Sbjct:   20 GAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMSGDAQACLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGM-------------MGLTAEMLARMHGISREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVE-----------ALATLRPAFDPVSGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_CITK8 (3-ketoacyl-CoA thiolase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=fadA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 68/232 (29.31%), Postives = 103/232 (44.40%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G   ++ A  L +  + + L R   ++ + + ++++G V      G   AR AAL A IP+SV   TVN++C S ++A+  A++ I  G     + GG+E M + P             + +   GM             MG  AE+ +  H I+RE QD FA  S  R  AA  +GAF  EI+P       G        +    +     L  LRP+F    GTVTAG +
Sbjct:   20 GAFRNVRAEDLSAHLMRSLLARNPALEATAIDDIYWGCVQQTLEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQTCLIGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGM-------------MGLTAEMLSRMHGISREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDADGVLKQFSYDEVIRPETTVEALSTLRPAFDPVSGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SHEDO (3-ketoacyl-CoA thiolase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=fadI PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 65/244 (26.64%), Postives = 113/244 (46.31%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP----KYLAEA----RKGSRLGHDSLVDGMLKDGLWDVY----------NDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            +SA  +G + +   + R+ +DP L++++ +G V+        AR+  LG G+  S    +V + CA+  ++ +  ++SI  G  ++ +AGG +S S  P    K LA A     K   LG    +  M + GL D+              SMG  AE  A+ + I+R +QD  A  S        ++G    E++   V+  +      +D+D  + +    +   KLRP+F    G+VTA N+
Sbjct:   35 VSALDMGKMVVNELISRSELDPKLIEQLVYGQVVLMPAAPNIAREIVLGTGMNVSTDAYSVTRACATSFQSAVNVAESIMTGNVEIGIAGGADSSSVLPITVSKKLAHALVDLNKARTLGQKFAI--MRRLGLKDLMPVPPAVAEYSTGLSMGQTAEQMAKTYGISRADQDALAHRSHTLATETWNSGNLRDEVMTAHVAPYK----QFIDRDNNIRENSVLESYAKLRPAFDRKHGSVTAANS 272          
The following BLAST results are available for this feature:
BLAST of FC931159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
FADA_ESCF39.883e-1529.313-ketoacyl-CoA thiolase OS=Escherichia fergusonii ... [more]
FADA_ECOL69.883e-1529.223-ketoacyl-CoA thiolase OS=Escherichia coli O6 GN=... [more]
FADA_ECOL59.883e-1529.223-ketoacyl-CoA thiolase OS=Escherichia coli O6:K15... [more]
FADA_ECOK19.883e-1529.223-ketoacyl-CoA thiolase OS=Escherichia coli O1:K1 ... [more]
FADA_ECO579.883e-1529.223-ketoacyl-CoA thiolase OS=Escherichia coli O157:H... [more]
FADI_SHEAM1.291e-1429.223-ketoacyl-CoA thiolase OS=Shewanella amazonensis ... [more]
FADI_ESCF31.291e-1425.823-ketoacyl-CoA thiolase OS=Escherichia fergusonii ... [more]
FADA_ECO241.291e-1429.223-ketoacyl-CoA thiolase OS=Escherichia coli O139:H... [more]
FADA_CITK81.291e-1429.313-ketoacyl-CoA thiolase OS=Citrobacter koseri (str... [more]
FADI_SHEDO1.686e-1426.643-ketoacyl-CoA thiolase OS=Shewanella denitrifican... [more]

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Properties
Property NameValue
Genbank descriptionC34102B03EF PostHarvP1 Citrus clementina cDNA clone C34102B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931159 ID=FC931159; Name=FC931159; organism=Citrus clementina; type=EST; length=709bp
ACCAATGGGTGGATTTCTTGGTACTCTATCTTCCTTATCTGCTACCAAGC
TTGGATCTATCGCTATTGAAGCTGCTCTTAAGAGAGCAAATGTTGATCCA
TCACTTGTACAAGAAGTTTTCTTTGGTAATGTTCTCAGTGCAAATCTAGG
ACAGGCTCCTGCTAGACAGGCTGCATTGGGTGCAGGAATTCCGAATTCAG
TGGTCTGTACTACTGTTAACAAAGTTTGTGCATCAGGGCTGAAAGCTATA
ATGCTTGCATCACAGAGTATCCAGTTGGGGATCAATGATGTCATTGTGGC
TGGAGGAATGGAAAGCATGTCTAACGCACCTAAATATTTGGCAGAAGCGA
GAAAGGGGTCTCGACTTGGACATGATTCTCTGGTTGATGGAATGCTTAAA
GATGGATTATGGGATGTTTATAATGATTGTAGCATGGGAACTTGTGCTGA
ACTTTGTGCTGAACAACATTCAATAACAAGGGAGAATCAGGATGACTTTG
CTGTTCTGAGCTTTGAGCGTGGTATTGCTGCCCAAGATGCTGGTGCCTTT
GCATGGGAAATTGTTCCAGTTGAAGTTTCTGCGGGAAGGGGAAAACCATC
AACCATTGTTGATAAGGATGAAGGTTTAGGCAAGTTTGACCCGGCAAAAT
TGAGGAAGCTTCGACCAAGTTTCAAGGAGAATGGAGGAACTGTTACGGCT
GGCAATGCC
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