FC931159

Overview
NameFC931159
Unique NameFC931159
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SHEFN (3-ketoacyl-CoA thiolase OS=Shewanella frigidimarina (strain NCIMB 400) GN=fadI PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.755e-14
Identity = 63/244 (25.82%), Postives = 111/244 (45.49%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP----KYLAEA--------------RKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            +SA  +G + +   L R+ +DP L++++ +G V+        AR+  LG G+  S    +V + CA+  ++ +  ++SI  G  ++ +AGG +S S  P    K LA A                  RLG   L+   +   + +     SMG  AE  A+ ++I+R +QD  A  S        ++G    E++   +   +      +D+D  + +    +   KLRP+F    GTVTA N+
Sbjct:   35 VSALDMGKMVVNELLSRSEIDPQLIEQLVYGQVVQMPAAPNIAREIVLGTGMNVSTDAYSVTRACATSFQSAVNVAESIMTGNIEIGLAGGSDSSSVLPIGVSKKLAHALVDLNKARTFKQKFAIARRLGLKDLMP--VPPAVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLATETWNSGHLRNEVMTAHIPPYK----QFIDRDNNIRENSVLESYAKLRPAFDRKHGTVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_VIBVY (3-ketoacyl-CoA thiolase OS=Vibrio vulnificus (strain YJ016) GN=fadI PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 71/244 (29.10%), Postives = 109/244 (44.67%), Query Frame = 2
Query:   29 SSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP----KYLAEA----RKGSRLGHD-SLVDGM-LKD------GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            S + A  LG + +   L R ++DP L+ +V FG V+        AR+  LG G+       +V + CA+  ++ +  ++SI  G  D+ +AGG +S S  P    K LA +     K   LG    ++ G+ LKD       + +     SMG  AE  A+ H ITR  QD  A  S      A   G  A E+    ++A        + +D  +      +   KLRP+F    G+VTA N+
Sbjct:   32 SQVPAVDLGKMVVSDLLARTDIDPKLIDQVVFGQVVQMPEAPNIAREIVLGTGMNIHTDAYSVTRACATSFQSAVNVAESIMAGAIDIGIAGGADSSSVLPIGVSKKLAASLLALSKTKTLGQKLKVLSGLGLKDLMPVPPAVAEYSTGLSMGQTAEQMAKTHGITRAEQDALAHRSHTLASQAWRDGKIAGEV----MTAFPEPYKKWIAEDNNIRHDSTLEGYAKLRPAFDRQYGSVTAANS 271          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SHEPC (3-ketoacyl-CoA thiolase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=fadI PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 66/244 (27.05%), Postives = 111/244 (45.49%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP----KYLAEA----RKGSRLGHDSLVDGMLKDGLWDVY----------NDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            +SA  +G + +   L R+ +DP L++++ +G V+        AR+  LG G+  S    +V + CA+  ++ +  ++SI  G  D+ +AGG +S S  P    K LA A     K    G    +   L  GL D+              SMG  AE  A+ ++I+R +QD  A  S         +G    E++   +   +      +D+D  + +    +   KLRP+F +  GTVTA N+
Sbjct:   35 VSALDMGKMVVNELLVRSELDPKLIEQLVYGQVVQMPAAPNIAREIVLGTGMNVSTDAYSVTRACATSFQSTVNVAESIMTGNIDIGIAGGADSSSVLPIGVSKKLAHALVDLNKARSFGQKLQIFRRL--GLKDLLPVPPAVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLASETWASGHLRDEVMVAHIPPYK----QFIDRDNNIRENSVLESYAKLRPAFDKQHGTVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_SHIDS (3-ketoacyl-CoA thiolase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=fadA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 70/243 (28.81%), Postives = 105/243 (43.21%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRG-----------KPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G   ++ A  L +  + + L R   ++ + + ++++G V      G   AR AAL A +P+SV   TVN++C S ++A+  A++ I  G     + GG+E M + P             + +   GM             MG  AE+ A  H I+RE QD FA  S  R  AA  + AF  EI+P       G           +P T V+            L  LRP+F    GTVTAG +
Sbjct:   20 GAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGM-------------MGLTAEMLARMHGISREMQDAFAARSHARAWAATQSAAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVE-----------ALATLRPAFDPVNGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_ECOHS (3-ketoacyl-CoA thiolase OS=Escherichia coli O9:H4 (strain HS) GN=fadA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 70/243 (28.81%), Postives = 105/243 (43.21%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRG-----------KPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G   ++ A  L +  + + L R   ++ + + ++++G V      G   AR AAL A +P+SV   TVN++C S ++A+  A++ I  G     + GG+E M + P             + +   GM             MG  AE+ A  H I+RE QD FA  S  R  AA  + AF  EI+P       G           +P T V+            L  LRP+F    GTVTAG +
Sbjct:   20 GAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGM-------------MGLTAEMLARMHGISREMQDAFAARSHARAWAATQSAAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVE-----------ALATLRPAFDPVNGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SHEON (3-ketoacyl-CoA thiolase OS=Shewanella oneidensis GN=fadI PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 65/242 (26.86%), Postives = 112/242 (46.28%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP----KYLAEA----RKGSRLGHDSLVDGML--KD------GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGK-FDPAKLRKLRPSFKENGGTVTAGNA 709
            +SA  +G + +   L R+ +DP L++++ +G V+        AR+  LG G+  S    +V + CA+  ++ +  ++SI  G  ++ +AGG +S S  P    K LA A     K    G    +   L  KD       + +     SMG  AE  A+ ++I+R +QD  A  S         +G    E++   V   +      +++D  + +  D A   KLRP+F +  G+VTA N+
Sbjct:   35 ISALDMGKMVVNELLVRSELDPKLIEQLVYGQVVQMPAAPNIAREIVLGTGMDVSTDAYSVTRACATSFQSAVNVAESIMTGNIEIGIAGGADSSSVLPIGVSKKLAHALVDLNKARTFGQKLQIFRRLGIKDLLPVPPAVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLANETWASGHLRDEVMVAHVPPYK----QFIERDNNIRENSDLASYAKLRPAFDKKHGSVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SHELP (3-ketoacyl-CoA thiolase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=fadI PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 65/244 (26.64%), Postives = 110/244 (45.08%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP----KYLAEA----RKGSRLGHDSLVDGMLKDGLWDVY----------NDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPA-KLRKLRPSFKENGGTVTAGNA 709
            +SA  +G + +   L R+ +DP  ++++ +G V+        AR+  LG G+  S    +V + CA+  ++ +  ++SI  G  ++ +AGG +S S  P    K LA A     K    G    +   L  GL D+              SMG  AE  A+ ++I+R +QD  A  S        D+G    E++   V   +    + +D+D  + +        KLRP+F    G+VTA N+
Sbjct:   35 VSALDMGKMVVNELLSRSELDPKEIEQLVYGQVVQMPAAPNIAREIVLGTGMNVSTDAYSVTRACATSFQSTVNVAESIMTGNIEIGIAGGADSSSVLPIGVSKKLAHALVDLNKARSFGQKWAIIRRL--GLKDLLPVPPAVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLATETWDSGHLRDEVMVAHVPPYK----SFIDRDNNIRENSSLDSYAKLRPAFDRKHGSVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_ENTS8 (3-ketoacyl-CoA thiolase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=fadI PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 63/240 (26.25%), Postives = 101/240 (42.08%), Query Frame = 2
Query:   41 ATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHDSLVDGMLK--------DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDP-AKLRKLRPSFKENGGTVTAGNA 709
            A  LG + +   L R+ + P +++++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++S+  G     +AGG +S S  P        + L +A K    G    +   L+          + +      MG  AE  A+ H ITRE QD  A  S +    A   G    E++       R      + +D  + K    A   KLRP+F    GTVTA N+
Sbjct:   37 AVDLGKMVVGELLARSEIPPEVIEQLVFGQVVQMPEAPNIAREIVLGTGMSVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKKLARTLVDANKARTAGQRLKLFSRLRLRDLLPVPPAVAEYSTGLRMGDTAEQMAKTHGITREQQDALAHRSHQLAAQAWAEGKLREEVMTAYTPPYREP----LSEDNNIRKTSSLADYAKLRPAFDRKHGTVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_YERE8 (3-ketoacyl-CoA thiolase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=fadI PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 63/240 (26.25%), Postives = 103/240 (42.92%), Query Frame = 2
Query:   41 ATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHDSLVDGMLK--------DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDP-AKLRKLRPSFKENGGTVTAGNA 709
            A  LG I +   L R+ V P L+ ++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++SI  G   V +AGG +S S  P        + L +  K   L     +   LK          + +      MG  AE  A+ + I+R++QD  A+ S +    A   G    E++   +       S  + +D  + K     +  KLRP+F    G+VTA N+
Sbjct:   37 AVDLGKIVVSELLARSGVAPELIDQLVFGQVVQMPEAPNIAREIVLGTGMSVHTDAYSVSRACATSFQAVANVAESIIAGSVTVAIAGGADSSSVLPIGVSKALARTLVDVNKARTLSQRLKLFSRLKLRDLLPVAPAVAEYSTGLRMGDTAEQMAKTYGISRQDQDALALRSHQMAAQAWQQGLLHDEVMTAYIPPF----SDAITEDNNIRKDSTMEQYAKLRPAFDRKHGSVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SHESR (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain MR-7) GN=fadI PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 64/242 (26.45%), Postives = 112/242 (46.28%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP----KYLAEA----RKGSRLGHDSLVDGML--KD------GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGK-FDPAKLRKLRPSFKENGGTVTAGNA 709
            +SA  +G + +   L R+ +DP L++++ +G V+        AR+  LG G+  S    +V + CA+  ++ +  ++SI  G  ++ +AGG +S S  P    K LA A     K    G    +   L  KD       + +     SMG  AE  A+ ++I+R +QD  A  S         +G    E++   V   +      +++D  + +  D +   KLRP+F +  G+VTA N+
Sbjct:   35 VSALDMGKMVVNELLARSELDPKLIEQLVYGQVVQMPAAPNIAREIVLGTGMDVSTDAYSVTRACATSFQSAVNVAESIMTGNIEIGIAGGADSSSVLPIGVSKKLAHALVDLNKARSFGQKLQIFRRLGIKDLLPVPPAVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLASETWASGHLRDEVMVAHVPPYK----QFIERDNNIRENSDLSSYAKLRPAFDKKHGSVTAANS 272          
The following BLAST results are available for this feature:
BLAST of FC931159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
FADI_SHEFN3.755e-1425.823-ketoacyl-CoA thiolase OS=Shewanella frigidimarin... [more]
FADI_VIBVY4.905e-1429.103-ketoacyl-CoA thiolase OS=Vibrio vulnificus (stra... [more]
FADI_SHEPC4.905e-1427.053-ketoacyl-CoA thiolase OS=Shewanella putrefaciens... [more]
FADA_SHIDS4.905e-1428.813-ketoacyl-CoA thiolase OS=Shigella dysenteriae se... [more]
FADA_ECOHS4.905e-1428.813-ketoacyl-CoA thiolase OS=Escherichia coli O9:H4 ... [more]
FADI_SHEON6.406e-1426.863-ketoacyl-CoA thiolase OS=Shewanella oneidensis G... [more]
FADI_SHELP8.366e-1426.643-ketoacyl-CoA thiolase OS=Shewanella loihica (str... [more]
FADI_ENTS88.366e-1426.253-ketoacyl-CoA thiolase OS=Enterobacter sakazakii ... [more]
FADI_YERE81.093e-1326.253-ketoacyl-CoA thiolase OS=Yersinia enterocolitica... [more]
FADI_SHESR1.093e-1326.453-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34102B03EF PostHarvP1 Citrus clementina cDNA clone C34102B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931159 ID=FC931159; Name=FC931159; organism=Citrus clementina; type=EST; length=709bp
ACCAATGGGTGGATTTCTTGGTACTCTATCTTCCTTATCTGCTACCAAGC
TTGGATCTATCGCTATTGAAGCTGCTCTTAAGAGAGCAAATGTTGATCCA
TCACTTGTACAAGAAGTTTTCTTTGGTAATGTTCTCAGTGCAAATCTAGG
ACAGGCTCCTGCTAGACAGGCTGCATTGGGTGCAGGAATTCCGAATTCAG
TGGTCTGTACTACTGTTAACAAAGTTTGTGCATCAGGGCTGAAAGCTATA
ATGCTTGCATCACAGAGTATCCAGTTGGGGATCAATGATGTCATTGTGGC
TGGAGGAATGGAAAGCATGTCTAACGCACCTAAATATTTGGCAGAAGCGA
GAAAGGGGTCTCGACTTGGACATGATTCTCTGGTTGATGGAATGCTTAAA
GATGGATTATGGGATGTTTATAATGATTGTAGCATGGGAACTTGTGCTGA
ACTTTGTGCTGAACAACATTCAATAACAAGGGAGAATCAGGATGACTTTG
CTGTTCTGAGCTTTGAGCGTGGTATTGCTGCCCAAGATGCTGGTGCCTTT
GCATGGGAAATTGTTCCAGTTGAAGTTTCTGCGGGAAGGGGAAAACCATC
AACCATTGTTGATAAGGATGAAGGTTTAGGCAAGTTTGACCCGGCAAAAT
TGAGGAAGCTTCGACCAAGTTTCAAGGAGAATGGAGGAACTGTTACGGCT
GGCAATGCC
back to top