FC931159

Overview
NameFC931159
Unique NameFC931159
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SHESM (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain MR-4) GN=fadI PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 64/242 (26.45%), Postives = 112/242 (46.28%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP----KYLAEA----RKGSRLGHDSLVDGML--KD------GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGK-FDPAKLRKLRPSFKENGGTVTAGNA 709
            +SA  +G + +   L R+ +DP L++++ +G V+        AR+  LG G+  S    +V + CA+  ++ +  ++SI  G  ++ +AGG +S S  P    K LA A     K    G    +   L  KD       + +     SMG  AE  A+ ++I+R +QD  A  S         +G    E++   V   +      +++D  + +  D +   KLRP+F +  G+VTA N+
Sbjct:   35 VSALDMGKMVVNELLARSELDPKLIEQLVYGQVVQMPAAPNIAREIVLGTGMDVSTDAYSVTRACATSFQSAVNVAESIMTGNIEIGIAGGADSSSVLPIGVSKKLAHALVDLNKARSFGQKLQIFRRLGIKDLLPVPPAVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLASETWASGHLRDEVMVAHVPPYK----QFIERDNNIRENSDLSSYAKLRPAFDKKHGSVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SHESH (3-ketoacyl-CoA thiolase OS=Shewanella sediminis (strain HAW-EB3) GN=fadI PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 64/244 (26.23%), Postives = 110/244 (45.08%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP----KYLAEA----RKGSRLGHDSLVDGMLKDGLWDVY----------NDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            +SA  +G + +   L R+ +DP  ++++ +G V+        AR+  LG G+  +    +V + CA+  ++ +  ++SI  G  ++ +AGG +S S  P    K LA A     K    G    +   L  GL D+              SMG  AE  A+ ++I+R +QD  A  S        +AG    E++   V   +    + +D+D  + +    +   KLRP+F    GTVTA  +
Sbjct:   35 VSALDMGKMVVNEMLSRSELDPKQIEQLVYGQVVLMPAAPNIAREIVLGTGMDVATDAYSVTRACATSFQSTVNVAESIMTGNIEIGIAGGADSSSVVPIGVSKKLAHALIDLNKARSFGQKLAIIRRL--GLKDLLPVPPAVAEFSTGLSMGQTAEQMAKTYNISRADQDALAHRSHSLATETWNAGHLTDEVMAAHVPPYK----SFIDRDNNIRENSTIESYAKLRPAFDRKHGTVTAATS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SHESA (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ANA-3) GN=fadI PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 64/242 (26.45%), Postives = 112/242 (46.28%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP----KYLAEA----RKGSRLGHDSLVDGML--KD------GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGK-FDPAKLRKLRPSFKENGGTVTAGNA 709
            +SA  +G + +   L R+ +DP L++++ +G V+        AR+  LG G+  S    +V + CA+  ++ +  ++SI  G  ++ +AGG +S S  P    K LA A     K    G    +   L  KD       + +     SMG  AE  A+ ++I+R +QD  A  S         +G    E++   V   +      +++D  + +  D +   KLRP+F +  G+VTA N+
Sbjct:   35 VSALDMGKMVVNELLARSELDPKLIEQLVYGQVVQMPAAPNIAREIVLGTGMDVSTDAYSVTRACATSFQSAVNVAESIMTGNIEIGIAGGADSSSVLPIGVSKKLAHALVDLNKARSFGQKLQIFRRLGIKDLLPVPPAVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLASETWASGHLRDEVMVAHVPPYK----QFIERDNNIRENSDLSSYAKLRPAFDKKHGSVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SHEB9 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS195) GN=fadI PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 65/242 (26.86%), Postives = 111/242 (45.87%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP----KYLAEA----RKGSRLGHDSLVDGML--KD------GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            +SA  +G + +   L R+ +DP L++++ +G V+        AR+  LG G+  S    +V + CA+  ++ +  ++SI  G  ++ +AGG +S S  P    K LA A     K    G    +   L  KD       + +     SMG  AE  A+ ++I+R +QD  A  S         +G    E++   V   +      +D+D  + +    +   KLRP+F +  GTVTA N+
Sbjct:   35 VSALDMGKMVVNELLARSELDPKLIEQLVYGQVVQMPAAPNIAREIVLGTGMNVSTDAYSVTRACATSFQSAVNVAESIMTGNIEIGIAGGADSSSVLPIGVSKKLAHALVDLNKARSFGQKLQIFRRLGIKDLLPVPPAVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLASETWASGHLRDEVMVAHVPPYK----QFIDRDNNIRENSVLESYAKLRPAFDKQHGTVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SHEB8 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS185) GN=fadI PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 65/242 (26.86%), Postives = 111/242 (45.87%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP----KYLAEA----RKGSRLGHDSLVDGML--KD------GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            +SA  +G + +   L R+ +DP L++++ +G V+        AR+  LG G+  S    +V + CA+  ++ +  ++SI  G  ++ +AGG +S S  P    K LA A     K    G    +   L  KD       + +     SMG  AE  A+ ++I+R +QD  A  S         +G    E++   V   +      +D+D  + +    +   KLRP+F +  GTVTA N+
Sbjct:   35 VSALDMGKMVVNELLARSELDPKLIEQLVYGQVVQMPAAPNIAREIVLGTGMNVSTDAYSVTRACATSFQSAVNVAESIMTGNIEIGIAGGADSSSVLPIGVSKKLAHALVDLNKARSFGQKLQIFRRLGIKDLLPVPPAVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLASETWASGHLRDEVMVAHVPPYK----QFIDRDNNIRENSVLESYAKLRPAFDKQHGTVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SHEB5 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fadI PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 65/242 (26.86%), Postives = 111/242 (45.87%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP----KYLAEA----RKGSRLGHDSLVDGML--KD------GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            +SA  +G + +   L R+ +DP L++++ +G V+        AR+  LG G+  S    +V + CA+  ++ +  ++SI  G  ++ +AGG +S S  P    K LA A     K    G    +   L  KD       + +     SMG  AE  A+ ++I+R +QD  A  S         +G    E++   V   +      +D+D  + +    +   KLRP+F +  GTVTA N+
Sbjct:   35 VSALDMGKMVVNELLARSELDPKLIEQLVYGQVVQMPAAPNIAREIVLGTGMNVSTDAYSVTRACATSFQSAVNVAESIMTGNIEIGIAGGADSSSVLPIGVSKKLAHALVDLNKARSFGQKLQIFRRLGIKDLLPVPPAVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLASETWASGHLRDEVMVAHVPPYK----QFIDRDNNIRENSVLESYAKLRPAFDKQHGTVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SHEB2 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS223) GN=fadI PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 65/242 (26.86%), Postives = 111/242 (45.87%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP----KYLAEA----RKGSRLGHDSLVDGML--KD------GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            +SA  +G + +   L R+ +DP L++++ +G V+        AR+  LG G+  S    +V + CA+  ++ +  ++SI  G  ++ +AGG +S S  P    K LA A     K    G    +   L  KD       + +     SMG  AE  A+ ++I+R +QD  A  S         +G    E++   V   +      +D+D  + +    +   KLRP+F +  GTVTA N+
Sbjct:   35 VSALDMGKMVVNELLARSELDPKLIEQLVYGQVVQMPAAPNIAREIVLGTGMNVSTDAYSVTRACATSFQSAVNVAESIMTGNIEIGIAGGADSSSVLPIGVSKKLAHALVDLNKARSFGQKLQIFRRLGIKDLLPVPPAVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLASETWASGHLRDEVMVAHVPPYK----QFIDRDNNIRENSVLESYAKLRPAFDKQHGTVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_IDILO (3-ketoacyl-CoA thiolase OS=Idiomarina loihiensis GN=fadI PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 63/242 (26.03%), Postives = 112/242 (46.28%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHDSLVDGML--KD------GLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGL-GKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + ++  + +  +D   V+++ FG V+        AR+  LG  +P      +V++ CA+  ++ +  ++++  G     +AGG +S S  P        + L +  K   LG    +   L  KD       + +     SMG  AE  A+ H+I+RE+QD+  V S ++  AA +AG  + E+    ++A        + +D  + G     KL KL+P F    G+VTA N+
Sbjct:   35 IPAVDLGKMVVQELVNKTGIDGDWVEQLVFGQVVQMPEAPNIAREIVLGTSLPVGTDAYSVSRACATSFQSAVNIAEAMVAGHIRGGIAGGADSSSVLPIGVSKRMARALVDLNKAKTLGQRFSILKRLGFKDLLPVPPAVAEYSTGLSMGQTAEQMAKTHNISREDQDELTVRSHQKAHAAWEAGWLSDEV----MTAYPEPYKKHLSRDNNIRGDSQIEKLAKLKPVFDRKHGSVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_SHIFL (3-ketoacyl-CoA thiolase OS=Shigella flexneri GN=fadA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 69/243 (28.40%), Postives = 105/243 (43.21%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRG-----------KPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G   ++ A  L +  + + L R   ++ + + ++++G V      G   AR AAL A +P+SV   TVN++C S ++A+  A++ I  G     + GG+E + + P             + +   GM             MG  AE+ A  H I+RE QD FA  S  R  AA  + AF  EI+P       G           +P T V+            L  LRP+F    GTVTAG +
Sbjct:   20 GAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHIGHVPMSHGVDFHPGLSRNVAKAAGM-------------MGLTAEMLARMHGISREMQDAFAARSHARAWAATQSAAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVE-----------ALATLRPAFDPVNGTVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_SHIF8 (3-ketoacyl-CoA thiolase OS=Shigella flexneri serotype 5b (strain 8401) GN=fadA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 69/243 (28.40%), Postives = 105/243 (43.21%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRG-----------KPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G   ++ A  L +  + + L R   ++ + + ++++G V      G   AR AAL A +P+SV   TVN++C S ++A+  A++ I  G     + GG+E + + P             + +   GM             MG  AE+ A  H I+RE QD FA  S  R  AA  + AF  EI+P       G           +P T V+            L  LRP+F    GTVTAG +
Sbjct:   20 GAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHIGHVPMSHGVDFHPGLSRNVAKAAGM-------------MGLTAEMLARMHGISREMQDAFAARSHARAWAATQSAAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVE-----------ALATLRPAFDPVNGTVTAGTS 238          
The following BLAST results are available for this feature:
BLAST of FC931159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
FADI_SHESM1.093e-1326.453-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADI_SHESH1.093e-1326.233-ketoacyl-CoA thiolase OS=Shewanella sediminis (s... [more]
FADI_SHESA1.093e-1326.453-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADI_SHEB91.093e-1326.863-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
FADI_SHEB81.093e-1326.863-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
FADI_SHEB51.093e-1326.863-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
FADI_SHEB21.093e-1326.863-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
FADI_IDILO1.093e-1326.033-ketoacyl-CoA thiolase OS=Idiomarina loihiensis G... [more]
FADA_SHIFL1.427e-1328.403-ketoacyl-CoA thiolase OS=Shigella flexneri GN=fa... [more]
FADA_SHIF81.427e-1328.403-ketoacyl-CoA thiolase OS=Shigella flexneri serot... [more]

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Properties
Property NameValue
Genbank descriptionC34102B03EF PostHarvP1 Citrus clementina cDNA clone C34102B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931159 ID=FC931159; Name=FC931159; organism=Citrus clementina; type=EST; length=709bp
ACCAATGGGTGGATTTCTTGGTACTCTATCTTCCTTATCTGCTACCAAGC
TTGGATCTATCGCTATTGAAGCTGCTCTTAAGAGAGCAAATGTTGATCCA
TCACTTGTACAAGAAGTTTTCTTTGGTAATGTTCTCAGTGCAAATCTAGG
ACAGGCTCCTGCTAGACAGGCTGCATTGGGTGCAGGAATTCCGAATTCAG
TGGTCTGTACTACTGTTAACAAAGTTTGTGCATCAGGGCTGAAAGCTATA
ATGCTTGCATCACAGAGTATCCAGTTGGGGATCAATGATGTCATTGTGGC
TGGAGGAATGGAAAGCATGTCTAACGCACCTAAATATTTGGCAGAAGCGA
GAAAGGGGTCTCGACTTGGACATGATTCTCTGGTTGATGGAATGCTTAAA
GATGGATTATGGGATGTTTATAATGATTGTAGCATGGGAACTTGTGCTGA
ACTTTGTGCTGAACAACATTCAATAACAAGGGAGAATCAGGATGACTTTG
CTGTTCTGAGCTTTGAGCGTGGTATTGCTGCCCAAGATGCTGGTGCCTTT
GCATGGGAAATTGTTCCAGTTGAAGTTTCTGCGGGAAGGGGAAAACCATC
AACCATTGTTGATAAGGATGAAGGTTTAGGCAAGTTTGACCCGGCAAAAT
TGAGGAAGCTTCGACCAAGTTTCAAGGAGAATGGAGGAACTGTTACGGCT
GGCAATGCC
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