FC931159

Overview
NameFC931159
Unique NameFC931159
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15352 contig Ccv1_Contig15352:174..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_ECO7I (3-ketoacyl-CoA thiolase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=fadI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 60/241 (24.90%), Postives = 102/241 (42.32%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHDSLVDGMLK--------DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R+ +   +++++ FG V+        AR+  LG G+       +V++ CA+  +AI   ++S+  G     +AGG +S S  P        + L +  K   +     +   L+          + +      MG  AE  A+ + ITRE QD  A  S +R   A   G    E++   +   +     +V+ +   G    A   KLRP+F    GTVTA N+
Sbjct:   35 IPAVDLGKMVVGELLARSEIPAEVIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAIANVAESLMAGTIRAGIAGGADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLFSRLRLRDLMPVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWSDGKLKEEVMTAFIPPYK---QPLVEDNNIRGNSSLADYAKLRPAFDRKHGTVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADA_ECOLI (3-ketoacyl-CoA thiolase OS=Escherichia coli (strain K12) GN=fadA PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 69/243 (28.40%), Postives = 104/243 (42.80%), Query Frame = 2
Query:   20 GTLSSLSATKLGSIAIEAALKR-ANVDPSLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRG-----------KPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            G   ++ A  L +  + + L R   ++ + + ++++G V      G   AR AAL A +P+SV   TVN++C S ++A+  A++ I  G     + GG+E M + P             + +   GM             MG  AE+ A  H I+RE QD FA  S  R  AA  + AF  EI+P       G           +P T V+            L  LRP+F    G VTAG +
Sbjct:   20 GAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGM-------------MGLTAEMLARMHGISREMQDAFAARSHARAWAATQSAAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVE-----------ALATLRPAFDPVNGMVTAGTS 238          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SHISS (3-ketoacyl-CoA thiolase OS=Shigella sonnei (strain Ss046) GN=fadI PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 59/241 (24.48%), Postives = 102/241 (42.32%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHDSLVDGMLK--------DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R+ +   +++++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++S+  G     +AGG +S S  P        + L +  K   +     +   L+          + +      MG  AE  A+ + ITRE QD  A  S +R   A   G    E++   +   +     +V+ +   G    A   KLRP+F    GTVTA N+
Sbjct:   35 IPAVDLGKMVVGELLARSEIPAEVIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLFSRLRLCDLMPVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWSDGKLKEEVMTAFIPPYK---QPLVEDNNIRGNSSLADYAKLRPAFDRKHGTVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SHIBS (3-ketoacyl-CoA thiolase OS=Shigella boydii serotype 4 (strain Sb227) GN=fadI PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 59/241 (24.48%), Postives = 102/241 (42.32%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHDSLVDGMLK--------DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R+ +   +++++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++S+  G     +AGG +S S  P        + L +  K   +     +   L+          + +      MG  AE  A+ + ITRE QD  A  S +R   A   G    E++   +   +     +V+ +   G    A   KLRP+F    GTVTA N+
Sbjct:   35 IPAVDLGKMVVGELLARSEIPAEVIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLFSRLRLRDLMPVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWSDGKLKEEVMTAFIPPYK---QPLVEDNNIRGNSSLADYAKLRPAFDRKHGTVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SHIB3 (3-ketoacyl-CoA thiolase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=fadI PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 59/241 (24.48%), Postives = 102/241 (42.32%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHDSLVDGMLK--------DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R+ +   +++++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++S+  G     +AGG +S S  P        + L +  K   +     +   L+          + +      MG  AE  A+ + ITRE QD  A  S +R   A   G    E++   +   +     +V+ +   G    A   KLRP+F    GTVTA N+
Sbjct:   35 IPAVDLGKMVVGELLARSEIPAEVIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLFSRLRLRDLMPVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWSDGKLKEEVMTAFIPPYK---QPLVEDNNIRGNSSLADYAKLRPAFDRKHGTVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_ECOUT (3-ketoacyl-CoA thiolase OS=Escherichia coli (strain UTI89 / UPEC) GN=fadI PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 59/241 (24.48%), Postives = 101/241 (41.91%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHDSLVDGMLK--------DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R  +   +++++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++S+  G     +AGG +S S  P        + L +  K   +     +   L+          + +      MG  AE  A+ + ITRE QD  A  S +R   A   G    E++   +   +     +V+ +   G    A   KLRP+F    GTVTA N+
Sbjct:   35 IPAVDLGKMVVGELLARTEIPAEVIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLFSRLRLRDLMPVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWSEGKLKEEVMTAFIPPYK---QPLVEDNNIRGNSSLADYAKLRPAFDRKHGTVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_ECOSE (3-ketoacyl-CoA thiolase OS=Escherichia coli (strain SE11) GN=fadI PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 59/241 (24.48%), Postives = 102/241 (42.32%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHDSLVDGMLK--------DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R+ +   +++++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++S+  G     +AGG +S S  P        + L +  K   +     +   L+          + +      MG  AE  A+ + ITRE QD  A  S +R   A   G    E++   +   +     +V+ +   G    A   KLRP+F    GTVTA N+
Sbjct:   35 IPAVDLGKMVVGELLARSEIPAEVIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLFSRLRLRDLMPVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWSDGKLKEEVMTAFIPPYK---QPLVEDNNIRGNSSLADYAKLRPAFDRKHGTVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_ECOLI (3-ketoacyl-CoA thiolase OS=Escherichia coli (strain K12) GN=fadI PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 59/241 (24.48%), Postives = 102/241 (42.32%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHDSLVDGMLK--------DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R+ +   +++++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++S+  G     +AGG +S S  P        + L +  K   +     +   L+          + +      MG  AE  A+ + ITRE QD  A  S +R   A   G    E++   +   +     +V+ +   G    A   KLRP+F    GTVTA N+
Sbjct:   35 IPAVDLGKMVVGELLARSEIPAEVIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLFSRLRLRDLMPVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWSDGKLKEEVMTAFIPPYK---QPLVEDNNIRGNSSLADYAKLRPAFDRKHGTVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_ECOL5 (3-ketoacyl-CoA thiolase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=fadI PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 59/241 (24.48%), Postives = 101/241 (41.91%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHDSLVDGMLK--------DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R  +   +++++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++S+  G     +AGG +S S  P        + L +  K   +     +   L+          + +      MG  AE  A+ + ITRE QD  A  S +R   A   G    E++   +   +     +V+ +   G    A   KLRP+F    GTVTA N+
Sbjct:   35 IPAVDLGKMVVGELLARTEIPAEVIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLFSRLRLRDLMPVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWSEGKLKEEVMTAFIPPYK---QPLVEDNNIRGNSSLADYAKLRPAFDRKHGTVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_ECOK1 (3-ketoacyl-CoA thiolase OS=Escherichia coli O1:K1 / APEC GN=fadI PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 59/241 (24.48%), Postives = 101/241 (41.91%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHDSLVDGMLK--------DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R  +   +++++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++S+  G     +AGG +S S  P        + L +  K   +     +   L+          + +      MG  AE  A+ + ITRE QD  A  S +R   A   G    E++   +   +     +V+ +   G    A   KLRP+F    GTVTA N+
Sbjct:   35 IPAVDLGKMVVGELLARTEIPAEVIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLFSRLRLRDLMPVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWSEGKLKEEVMTAFIPPYK---QPLVEDNNIRGNSSLADYAKLRPAFDRKHGTVTAANS 272          
The following BLAST results are available for this feature:
BLAST of FC931159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
FADI_ECO7I2.434e-1324.903-ketoacyl-CoA thiolase OS=Escherichia coli O7:K1 ... [more]
FADA_ECOLI2.434e-1328.403-ketoacyl-CoA thiolase OS=Escherichia coli (strai... [more]
FADI_SHISS3.179e-1324.483-ketoacyl-CoA thiolase OS=Shigella sonnei (strain... [more]
FADI_SHIBS3.179e-1324.483-ketoacyl-CoA thiolase OS=Shigella boydii serotyp... [more]
FADI_SHIB33.179e-1324.483-ketoacyl-CoA thiolase OS=Shigella boydii serotyp... [more]
FADI_ECOUT3.179e-1324.483-ketoacyl-CoA thiolase OS=Escherichia coli (strai... [more]
FADI_ECOSE3.179e-1324.483-ketoacyl-CoA thiolase OS=Escherichia coli (strai... [more]
FADI_ECOLI3.179e-1324.483-ketoacyl-CoA thiolase OS=Escherichia coli (strai... [more]
FADI_ECOL53.179e-1324.483-ketoacyl-CoA thiolase OS=Escherichia coli O6:K15... [more]
FADI_ECOK13.179e-1324.483-ketoacyl-CoA thiolase OS=Escherichia coli O1:K1 ... [more]

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Properties
Property NameValue
Genbank descriptionC34102B03EF PostHarvP1 Citrus clementina cDNA clone C34102B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931159 ID=FC931159; Name=FC931159; organism=Citrus clementina; type=EST; length=709bp
ACCAATGGGTGGATTTCTTGGTACTCTATCTTCCTTATCTGCTACCAAGC
TTGGATCTATCGCTATTGAAGCTGCTCTTAAGAGAGCAAATGTTGATCCA
TCACTTGTACAAGAAGTTTTCTTTGGTAATGTTCTCAGTGCAAATCTAGG
ACAGGCTCCTGCTAGACAGGCTGCATTGGGTGCAGGAATTCCGAATTCAG
TGGTCTGTACTACTGTTAACAAAGTTTGTGCATCAGGGCTGAAAGCTATA
ATGCTTGCATCACAGAGTATCCAGTTGGGGATCAATGATGTCATTGTGGC
TGGAGGAATGGAAAGCATGTCTAACGCACCTAAATATTTGGCAGAAGCGA
GAAAGGGGTCTCGACTTGGACATGATTCTCTGGTTGATGGAATGCTTAAA
GATGGATTATGGGATGTTTATAATGATTGTAGCATGGGAACTTGTGCTGA
ACTTTGTGCTGAACAACATTCAATAACAAGGGAGAATCAGGATGACTTTG
CTGTTCTGAGCTTTGAGCGTGGTATTGCTGCCCAAGATGCTGGTGCCTTT
GCATGGGAAATTGTTCCAGTTGAAGTTTCTGCGGGAAGGGGAAAACCATC
AACCATTGTTGATAAGGATGAAGGTTTAGGCAAGTTTGACCCGGCAAAAT
TGAGGAAGCTTCGACCAAGTTTCAAGGAGAATGGAGGAACTGTTACGGCT
GGCAATGCC
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