FC931159

Overview
NameFC931159
Unique NameFC931159
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_ALTMD (3-ketoacyl-CoA thiolase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=fadI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 67/244 (27.46%), Postives = 104/244 (42.62%), Query Frame = 2
Query:   41 ATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHD-------SLVD-GMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIV-----PVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            A  LG + +   L R  V    V +V +G V+        AR+  LG G+       +V++ CA+  ++ +  ++S+  G   V +AGG +S S +P        + L + +K   LG         SL D   +   + +     SMG  AE  A+ H I+RE QD  A  S      + +AG  + E++     P + +  R        K EG          KLRP F +  G+VTA NA
Sbjct:   37 AVDLGKMVVNELLVRHGVQKEWVDQVVYGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQSTVNIAESMMAGTVQVGIAGGADSTSVSPIGVSKNLARALVDLQKTKTLGQKLNIFKRLSLRDLAPVPPAVAEYSTGLSMGQTAEQMAKTHQISREEQDKLAHRSHSLAAESWEAGKLSSEVMTAYAEPYKAALERDNNVRFDSKLEGYA--------KLRPVFDKKYGSVTAANA 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_VIBPA (3-ketoacyl-CoA thiolase OS=Vibrio parahaemolyticus GN=fadI PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 66/244 (27.05%), Postives = 103/244 (42.21%), Query Frame = 2
Query:   29 SSLSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHD-------SLVDGM-LKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAK-LRKLRPSFKENGGTVTAGNA 709
            S + A  LG + +   L R ++DP L+++V FG V+        AR+  LG G+       +V + CA+  +A +  ++SI  G  ++ +AGG +S S  P          L    K   LG         S  D M +   + +     SMG  AE  A+ H I+R  QD  A  S      A   G    E+    ++A        + +D  +      +   KLRP+F    G+VTA N+
Sbjct:   32 SQVPAVDLGKMVVSEMLARTDIDPKLIEQVVFGQVVQMPEAPNIAREIVLGTGMNIHTDAYSVTRACATSFQAAVNVAESIMAGTIEIGIAGGADSSSVLPIGVSKKLAANLLALSKTKTLGQKLNILKSLSFKDLMPVPPAVAEYSTGLSMGQTAEQMAKTHGISRAEQDALAHRSHTLASQAWKEGKIQGEV----MTAFPEPYKKWISEDNNVRHDSTLEGYAKLRPAFDRQYGSVTAANS 271          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SHIDS (3-ketoacyl-CoA thiolase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=fadI PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 57/241 (23.65%), Postives = 101/241 (41.91%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHDSLVDGMLK--------DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R+ +   +++++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++S+  G     +AGG +S S  P        + L +  K   +     +   L+          + +      MG  AE  A+ + ITRE QD  A  S +R   +   G    E++   +   +     + + +   G    A   KLRP+F    GTVTA N+
Sbjct:   35 IPAVDLGKMVVGELLARSEIPAEVIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLFSRLRLRDLMPVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQSWSEGKLKEEVMTAFIPPYK---QLLAEDNNICGNSSLADYAKLRPAFDRKHGTVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_ECO5E (3-ketoacyl-CoA thiolase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=fadI PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 58/241 (24.07%), Postives = 100/241 (41.49%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHDSLVDGMLK--------DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R+ +   +++++ FG V+        AR+  LG G+       +V++ CA+  +A+    +S+  G     +AGG +S S  P        + L +  K   +     +   L+          + +      MG  AE  A+ + ITRE QD  A  S +R   A   G    E++   +   +     + + +   G    A   KLRP+F    GTVTA N+
Sbjct:   35 IPAVDLGKMVVGELLARSEIPAEVIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVVESLMAGTIRAGIAGGADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLFSRLRLRDLMPVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWSDGKLKEEVMTAFIPPYK---QLLAEDNNIRGNSSLADFAKLRPAFDRKHGTVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_ECO57 (3-ketoacyl-CoA thiolase OS=Escherichia coli O157:H7 GN=fadI PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 58/241 (24.07%), Postives = 100/241 (41.49%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHDSLVDGMLK--------DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R+ +   +++++ FG V+        AR+  LG G+       +V++ CA+  +A+    +S+  G     +AGG +S S  P        + L +  K   +     +   L+          + +      MG  AE  A+ + ITRE QD  A  S +R   A   G    E++   +   +     + + +   G    A   KLRP+F    GTVTA N+
Sbjct:   35 IPAVDLGKMVVGELLARSEIPAEVIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVVESLMAGTIRAGIAGGADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLFSRLRLRDLMPVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWSDGKLKEEVMTAFIPPYK---QLLAEDNNIRGNSSLADFAKLRPAFDRKHGTVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_KLEP7 (3-ketoacyl-CoA thiolase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=fadI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 60/240 (25.00%), Postives = 104/240 (43.33%), Query Frame = 2
Query:   41 ATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHDSLVDGMLK--------DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDP-AKLRKLRPSFKENGGTVTAGNA 709
            A  LG + +   L R+++   +++++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++S+  G     +AGG +S S  P        + L +A K   L     +   L+          + +      MG  AE  A+   I+RE QD  A  S +    A + G  + E++       R      +++D  + K    A  +KLRP+F    GTVTA N+
Sbjct:   37 AIDLGKMVVGEMLARSDIPAEVIEQLVFGQVVQMPEAPNIAREIVLGTGMSVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKTLARTLVDANKARTLSQKLKLFSRLRPRDLLPVPPAVAEYSTGLRMGDTAEQMAKSWGISREQQDALAHRSHQLAAKAWEEGKLSAEVMTAYAPPFREP----LEQDNNIRKNSTLADYQKLRPAFDRKHGTVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SALPK (3-ketoacyl-CoA thiolase OS=Salmonella paratyphi A (strain AKU_12601) GN=fadI PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 62/243 (25.51%), Postives = 103/243 (42.39%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKG----------SRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R+ +    ++++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++S+  G     +AGG +S S  P        + L +  K           SRL    L+   +   + +      MG  AE  A+ + ITRE QD  A  S +R   A   G  A E++   V   +   +   + +   G    A   KLRP+F    G+VTA N+
Sbjct:   35 IPAVDLGKMVVGELLARSEIPADAIEQLVFGQVVQMPKAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKALARVLVDVNKARTTRQRLTLFSRLRLRDLLP--VPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWAEGKLAEEVMTTYVPPYK---NPFAEDNNIRGASTLADYAKLRPAFDRKHGSVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_PHOLL (3-ketoacyl-CoA thiolase OS=Photorhabdus luminescens subsp. laumondii GN=fadI PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 62/241 (25.73%), Postives = 101/241 (41.91%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKGSRLGHDSLVDGMLK--------DGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG   +   + R+ + P  + ++ FG V+        AR+  LGAG+  S    +V++ CA+  +AI   ++SI  G  ++ +AGG +S S  P        + L E  K   L     +   LK          + +      MG  AE  A+ + I+RE+QD  A  S      A + G    E++       R     +++ +            KLRP+F    GTVTA N+
Sbjct:   35 IPAVDLGKSVVSELVTRSGLLPEKIDQLVFGQVVQMPEAPNIAREIVLGAGLSVSTDAYSVSRACATSFQAIANVAESIMAGTVNIGIAGGADSSSVLPIGVTKSLARTLVEMNKAKTLSQRLKLLSRLKFRDLLPVSPAVAEYSTGLRMGDTAEQMAKTYRISREDQDALAHRSHILAAKAWEQGLLVDEVMTAHFPPYR---EALLEDNNIRKNSVLTSYAKLRPAFDRKYGTVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SALTY (3-ketoacyl-CoA thiolase OS=Salmonella typhimurium GN=fadI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 62/243 (25.51%), Postives = 103/243 (42.39%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKG----------SRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R+ +    ++++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++S+  G     +AGG +S S  P        + L +  K           SRL    L+   +   + +      MG  AE  A+ + ITRE QD  A  S +R   A   G  A E++   V   +   +   + +   G    A   KLRP+F    G+VTA N+
Sbjct:   35 IPAVDLGKMVVGELLARSEIPADAIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKALARVLVDVNKARTTRQRLTLFSRLRLRDLLP--VPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWAEGKLAEEVMTTYVPPYK---NPFAEDNNIRGASTLADYAKLRPAFDRKHGSVTAANS 272          
BLAST of FC931159 vs. ExPASy Swiss-Prot
Match: FADI_SALTI (3-ketoacyl-CoA thiolase OS=Salmonella typhi GN=fadI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 62/243 (25.51%), Postives = 103/243 (42.39%), Query Frame = 2
Query:   35 LSATKLGSIAIEAALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTVNKVCASGLKAIMLASQSIQLGINDVIVAGGMESMSNAP--------KYLAEARKG----------SRLGHDSLVDGMLKDGLWDVYNDCSMGTCAELCAEQHSITRENQDDFAVLSFERGIAAQDAGAFAWEIVPVEVSAGRGKPSTIVDKDEGLGKFDPAKLRKLRPSFKENGGTVTAGNA 709
            + A  LG + +   L R+ +    ++++ FG V+        AR+  LG G+       +V++ CA+  +A+   ++S+  G     +AGG +S S  P        + L +  K           SRL    L+   +   + +      MG  AE  A+ + ITRE QD  A  S +R   A   G  A E++   V   +   +   + +   G    A   KLRP+F    G+VTA N+
Sbjct:   35 IPAVDLGKMVVGELLARSEIPADAIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKALARVLVDVNKARTTRQRLTLFSRLRLRDLLP--VPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWAEGKLAEEVMTTYVPPYK---NPFAEDNNIRGASTLADYAKLRPAFDRKHGSVTAANS 272          
The following BLAST results are available for this feature:
BLAST of FC931159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
FADI_ALTMD9.250e-1327.463-ketoacyl-CoA thiolase OS=Alteromonas macleodii (... [more]
FADI_VIBPA1.208e-1227.053-ketoacyl-CoA thiolase OS=Vibrio parahaemolyticus... [more]
FADI_SHIDS1.208e-1223.653-ketoacyl-CoA thiolase OS=Shigella dysenteriae se... [more]
FADI_ECO5E1.578e-1224.073-ketoacyl-CoA thiolase OS=Escherichia coli O157:H... [more]
FADI_ECO571.578e-1224.073-ketoacyl-CoA thiolase OS=Escherichia coli O157:H... [more]
FADI_KLEP72.061e-1225.003-ketoacyl-CoA thiolase OS=Klebsiella pneumoniae s... [more]
FADI_SALPK2.691e-1225.513-ketoacyl-CoA thiolase OS=Salmonella paratyphi A ... [more]
FADI_PHOLL2.691e-1225.733-ketoacyl-CoA thiolase OS=Photorhabdus luminescen... [more]
FADI_SALTY3.515e-1225.513-ketoacyl-CoA thiolase OS=Salmonella typhimurium ... [more]
FADI_SALTI3.515e-1225.513-ketoacyl-CoA thiolase OS=Salmonella typhi GN=fad... [more]

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Properties
Property NameValue
Genbank descriptionC34102B03EF PostHarvP1 Citrus clementina cDNA clone C34102B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931159 ID=FC931159; Name=FC931159; organism=Citrus clementina; type=EST; length=709bp
ACCAATGGGTGGATTTCTTGGTACTCTATCTTCCTTATCTGCTACCAAGC
TTGGATCTATCGCTATTGAAGCTGCTCTTAAGAGAGCAAATGTTGATCCA
TCACTTGTACAAGAAGTTTTCTTTGGTAATGTTCTCAGTGCAAATCTAGG
ACAGGCTCCTGCTAGACAGGCTGCATTGGGTGCAGGAATTCCGAATTCAG
TGGTCTGTACTACTGTTAACAAAGTTTGTGCATCAGGGCTGAAAGCTATA
ATGCTTGCATCACAGAGTATCCAGTTGGGGATCAATGATGTCATTGTGGC
TGGAGGAATGGAAAGCATGTCTAACGCACCTAAATATTTGGCAGAAGCGA
GAAAGGGGTCTCGACTTGGACATGATTCTCTGGTTGATGGAATGCTTAAA
GATGGATTATGGGATGTTTATAATGATTGTAGCATGGGAACTTGTGCTGA
ACTTTGTGCTGAACAACATTCAATAACAAGGGAGAATCAGGATGACTTTG
CTGTTCTGAGCTTTGAGCGTGGTATTGCTGCCCAAGATGCTGGTGCCTTT
GCATGGGAAATTGTTCCAGTTGAAGTTTCTGCGGGAAGGGGAAAACCATC
AACCATTGTTGATAAGGATGAAGGTTTAGGCAAGTTTGACCCGGCAAAAT
TGAGGAAGCTTCGACCAAGTTTCAAGGAGAATGGAGGAACTGTTACGGCT
GGCAATGCC
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