FC931169

Overview
NameFC931169
Unique NameFC931169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931169 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS4 (Chaperone protein dnaK OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dnaK PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.385e-33
Identity = 75/139 (53.96%), Postives = 95/139 (68.35%), Query Frame = 1
Query:  289 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 702
            +  VIGIDLGTT SCV +       +I N +G R TPS V FTDSERL+G+ AK QA  NP  T+F VKRLIGR+  D EV++D KL PY IVN  +G  +++V+   GE   +SP +ISA IL KMKETAEA+LG+ +
Sbjct:    1 MAKVIGIDLGTTNSCVAIMDGAQPRVIENSEGARTTPSIVGFTDSERLVGQPAKRQAVTNPSNTVFAVKRLIGRRVGDAEVEKDKKLVPYSIVNGGNGDAWVEVR---GEK--YSPSQISAFILQKMKETAEAYLGESV 134          
BLAST of FC931169 vs. ExPASy Swiss-Prot
Match: DNAK_MESSB (Chaperone protein dnaK OS=Mesorhizobium sp. (strain BNC1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.385e-33
Identity = 77/139 (55.40%), Postives = 95/139 (68.35%), Query Frame = 1
Query:  289 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 702
            +  VIGIDLGTT SCV V      ++I N +G R TPS VAFTDS ERL+G+ AK QA  NP+ T F +KRLIGR+FED  V++D KL PYKIV  D        +    TK +SP +ISAMIL KMKETAE++LG+K+
Sbjct:    1 MAKVIGIDLGTTNSCVAVMDGKDAKVIENAEGARTTPSIVAFTDSDERLVGQPAKRQAVTNPENTFFAIKRLIGRRFEDPMVEKDKKLVPYKIVKADNG---DAWVESHGTK-YSPSQISAMILQKMKETAESYLGEKV 135          
BLAST of FC931169 vs. ExPASy Swiss-Prot
Match: DNAK_ACIF5 (Chaperone protein dnaK OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=dnaK PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.385e-33
Identity = 74/139 (53.24%), Postives = 99/139 (71.22%), Query Frame = 1
Query:  289 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 702
            +  VIGIDLGTT SCV V +   V++I N +G R TPS VA T+  E L+GEAAK QA  NP+ T+++VKRLIGRKF+D EVQ+D+K  PYK++  D      V++RD   K +S ++ISA IL KMK+TAE +LG+K+
Sbjct:    1 MAKVIGIDLGTTNSCVAVMEGDKVKVIENSEGKRTTPSIVAITEEGEVLVGEAAKRQAVTNPENTVYEVKRLIGRKFDDAEVQKDLKHVPYKVIKADNGD-AWVEVRD---KKYSAQQISAFILQKMKKTAEDYLGEKV 135          
BLAST of FC931169 vs. ExPASy Swiss-Prot
Match: DNAK_ACIF2 (Chaperone protein dnaK OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=dnaK PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.385e-33
Identity = 74/139 (53.24%), Postives = 99/139 (71.22%), Query Frame = 1
Query:  289 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 702
            +  VIGIDLGTT SCV V +   V++I N +G R TPS VA T+  E L+GEAAK QA  NP+ T+++VKRLIGRKF+D EVQ+D+K  PYK++  D      V++RD   K +S ++ISA IL KMK+TAE +LG+K+
Sbjct:    1 MAKVIGIDLGTTNSCVAVMEGDKVKVIENSEGKRTTPSIVAITEEGEVLVGEAAKRQAVTNPENTVYEVKRLIGRKFDDAEVQKDLKHVPYKVIKADNGD-AWVEVRD---KKYSAQQISAFILQKMKKTAEDYLGEKV 135          
BLAST of FC931169 vs. ExPASy Swiss-Prot
Match: DNAK1_COLP3 (Chaperone protein dnaK 1 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=dnaK1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.385e-33
Identity = 74/136 (54.41%), Postives = 99/136 (72.79%), Query Frame = 1
Query:  298 VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 702
            +IGIDLGTT SCV V + G  +II N +G+R TPS VA+ ++E L G+ AK Q+  N   T+F +KRLIGRKF+DKEVQ+D+KLAPYKIV  D G  +++V   DG  K  SP+E+SA IL K+K+ AEA+LG+ +
Sbjct:    4 IIGIDLGTTNSCVAVMEGGIAKIIENAEGSRTTPSIVAYANNETLAGQPAKRQSVTNSTNTLFAIKRLIGRKFDDKEVQKDIKLAPYKIVKADNGDAWVEV---DG--KALSPQEVSAQILRKLKKDAEAYLGETV 134          
BLAST of FC931169 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS5 (Chaperone protein dnaK OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.339e-33
Identity = 75/139 (53.96%), Postives = 95/139 (68.35%), Query Frame = 1
Query:  289 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 702
            +  VIGIDLGTT SCV +       +I N +G R TPS V FTDSERL+G+ AK QA  NP  T+F VKRLIGR+  D EV++D KL PY IVN  +G  +++V+   GE   +SP +ISA IL KMKETAEA+LG+ +
Sbjct:    1 MAKVIGIDLGTTNSCVAIMDGAQPRVIENSEGARTTPSIVGFTDSERLVGQPAKRQAVTNPSNTVFAVKRLIGRRVGDAEVEKDKKLVPYAIVNGGNGDAWVEVR---GEK--YSPSQISAFILQKMKETAEAYLGESV 134          
BLAST of FC931169 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS1 (Chaperone protein dnaK OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=dnaK PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.339e-33
Identity = 75/139 (53.96%), Postives = 95/139 (68.35%), Query Frame = 1
Query:  289 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 702
            +  VIGIDLGTT SCV +       +I N +G R TPS V FTDSERL+G+ AK QA  NP  T+F VKRLIGR+  D EV++D KL PY IVN  +G  +++V+   GE   +SP +ISA IL KMKETAEA+LG+ +
Sbjct:    1 MAKVIGIDLGTTNSCVAIMDGAQPRVIENSEGARTTPSIVGFTDSERLVGQPAKRQAVTNPSNTVFAVKRLIGRRVGDAEVEKDKKLVPYSIVNGGNGDAWVEVR---GEK--YSPSQISAFILQKMKETAEAYLGETV 134          
BLAST of FC931169 vs. ExPASy Swiss-Prot
Match: DNAK_BRAJA (Chaperone protein dnaK OS=Bradyrhizobium japonicum GN=dnaK PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.339e-33
Identity = 76/140 (54.29%), Postives = 99/140 (70.71%), Query Frame = 1
Query:  289 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 702
            +G VIGIDLGTT SCV V    + ++I N +G R TPS VA TD  ERL+G+ AK QA  NP+RT F VKRLIGR+++D  V++D KL PYKIV   +G  +++    DG+T  +SP ++SA IL KMKETAEA LG+K+
Sbjct:    1 MGKVIGIDLGTTNSCVAVMDGKNAKVIENSEGMRTTPSIVAVTDDGERLVGQPAKRQAVTNPERTFFAVKRLIGRRYDDPMVEKDKKLVPYKIVKASNGDAWVEA---DGQT--YSPSQVSAFILQKMKETAEAHLGQKV 135          
BLAST of FC931169 vs. ExPASy Swiss-Prot
Match: DNAK_AZOC5 (Chaperone protein dnaK OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=dnaK PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.089e-32
Identity = 73/140 (52.14%), Postives = 97/140 (69.29%), Query Frame = 1
Query:  289 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 702
            +  +IGIDLGTT SCV V +    ++I N +G R TPS VAFT D ERL+G+ AK Q   NP+RT F VKRLIGR+++D  V++D KL PYK+V  D G  ++     + + K +SP +ISA IL KMKETAE+FLG+K+
Sbjct:    1 MSKIIGIDLGTTNSCVAVMEGASPKVIENAEGARTTPSIVAFTEDGERLVGQPAKRQGVTNPERTFFAVKRLIGRRYDDPTVEKDKKLVPYKVVRADNGDAWV-----ESDGKKYSPSQISAFILQKMKETAESFLGEKV 135          
BLAST of FC931169 vs. ExPASy Swiss-Prot
Match: DNAK_SYNAS (Chaperone protein dnaK OS=Syntrophus aciditrophicus (strain SB) GN=dnaK PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.422e-32
Identity = 73/139 (52.52%), Postives = 98/139 (70.50%), Query Frame = 1
Query:  289 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 702
            +G +IGIDLGTT SCV V + G   +IAN +GNR TPS VAFT+S ERL+G+ AK QA  N + T++ VKRLIGRK+  KEVQ D  ++P+KI         Q+++R    + +SP EIS+M+L KMK+TAE +LG+KI
Sbjct:    1 MGRIIGIDLGTTNSCVAVMEGGDPVVIANQEGNRTTPSIVAFTESGERLVGQVAKRQAVTNSENTVYAVKRLIGRKYNSKEVQYDKSISPFKISEAPNGD-AQIEVRG---RAYSPAEISSMVLVKMKQTAEDYLGEKI 135          
The following BLAST results are available for this feature:
BLAST of FC931169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_RHOS46.385e-3353.96Chaperone protein dnaK OS=Rhodobacter sphaeroides ... [more]
DNAK_MESSB6.385e-3355.40Chaperone protein dnaK OS=Mesorhizobium sp. (strai... [more]
DNAK_ACIF56.385e-3353.24Chaperone protein dnaK OS=Acidithiobacillus ferroo... [more]
DNAK_ACIF26.385e-3353.24Chaperone protein dnaK OS=Acidithiobacillus ferroo... [more]
DNAK1_COLP36.385e-3354.41Chaperone protein dnaK 1 OS=Colwellia psychrerythr... [more]
DNAK_RHOS58.339e-3353.96Chaperone protein dnaK OS=Rhodobacter sphaeroides ... [more]
DNAK_RHOS18.339e-3353.96Chaperone protein dnaK OS=Rhodobacter sphaeroides ... [more]
DNAK_BRAJA8.339e-3354.29Chaperone protein dnaK OS=Bradyrhizobium japonicum... [more]
DNAK_AZOC51.089e-3252.14Chaperone protein dnaK OS=Azorhizobium caulinodans... [more]
DNAK_SYNAS1.422e-3252.52Chaperone protein dnaK OS=Syntrophus aciditrophicu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34102C01EF PostHarvP1 Citrus clementina cDNA clone C34102C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931169 ID=FC931169; Name=FC931169; organism=Citrus clementina; type=EST; length=727bp
GGTGCACCCTATTTACACGTAAACCATCGGTCTATAAAGTGCTATCATTC
ACGCGCGATATTTCACTGAAACCAGAAGGCCTTTCGAAAGCAAAAAAACA
CACTTCAAACATCGAAACCTCCTCAATTGAACGAAGCTCTCTCAGAAAGG
AGTTTGAAGCAGGGTATAATTGCTGCAGTACGCGCGATGGCTGGCTCGTG
GAGAGCACGCGGGTCCCTCGTTGTGCTGGCGATTGTCTTCTTCGGAGGTC
TTTTTGCAATTTCAATTGCAAAAGAGGAAGCTACGAAGTTGGGAACGGTG
ATTGGGATAGATCTTGGTACAACTTATTCTTGTGTTGGTGTTTACAAGAA
TGGTCATGTCGAAATCATAGCCAATGATCAAGGAAACCGTATTACTCCAT
CATGGGTTGCATTCACTGACAGTGAGAGGTTGATCGGTGAGGCAGCAAAG
AATCAGGCTGCTGTCAATCCTGACAGGACCATCTTTGATGTCAAGAGACT
TATTGGAAGAAAGTTTGAGGACAAGGAGGTTCAGAGGGACATGAAGCTTG
CTCCTTACAAGATTGTGAATAGGGATGGAAAGCCTTATATTCAGGTTCAG
ATTAGGGACGGCGAGACCAAGGTCTTCAGTCCTGAGGAAATCAGTGCTAT
GATACTGACTAAGATGAAGGAGACAGCCGAGGCATTCCTTGGGAAGAAAA
TTAGGATGCTGTTGTCACTGGTCCTGC
back to top