FC931172

Overview
NameFC931172
Unique NameFC931172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931172 vs. ExPASy Swiss-Prot
Match: P2C13_ORYSJ (Probable protein phosphatase 2C 13 OS=Oryza sativa subsp. japonica GN=Os02g0255100 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:  445 GLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAIL 702
            G +K G+S  +GK    MED++  K  ++ G  + LF ++DGH G     YL+++LF N+LK  EF  D + +IS+ Y+KTD   L
Sbjct:  108 GKLKCGYSSFRGK-RATMEDFYDVKLTEIDGQAVSLFGVFDGHGGPRAAEYLKENLFENLLKHPEFLTDTKLAISETYQKTDTDFL 192
[Close]
BLAST of FC931172 vs. ExPASy Swiss-Prot
Match: P2C52_ORYSJ (Probable protein phosphatase 2C 52 OS=Oryza sativa subsp. japonica GN=Os05g0587100 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 32/86 (37.21%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:  445 GLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAIL 702
            G +  G+S  +GK    MED++  K  ++   ++ LF I+DGH G     YL++HLF N++K  EF  + + +IS+ Y+KTD   L
Sbjct:  226 GFLSCGYSSFRGK-RASMEDFYDIKSSKIDDKQISLFGIFDGHGGSRAAEYLKEHLFENLMKHPEFMTNTKLAISETYKKTDSEFL 310
The following BLAST results are available for this feature:
BLAST of FC931172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
P2C13_ORYSJ7.767e-1239.53Probable protein phosphatase 2C 13 OS=Oryza sativa... [more]
P2C52_ORYSJ8.587e-1137.21Probable protein phosphatase 2C 52 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC34102C04EF PostHarvP1 Citrus clementina cDNA clone C34102C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931172 ID=FC931172; Name=FC931172; organism=Citrus clementina; type=EST; length=705bp
TCTCCTTTCAAAAAGGTTTCAAATCTTCTCCTCTCTCCCTCTTTTTTTTT
TTTCCCCCCCTTTCTAATCTCTGTTTATAATAATCTATCTCTTTATTCAA
TTGCTTGCACAAACTAATAAACACAAATTATATTAGAAAAAAAAGAGGAA
GAAGAAGAAACATCAAAAACCCCCCACGGAACAAAGATCACCAACAAGGA
GCATCAGTTGATTTTTAGCTTTGAATTGATCAACGAGAGATTGAGAATTC
TGGGAGCTGGGCTTGATTTAAAATTTTGGAGTAGAGTTGTTTACCAAGAG
TTTGATGTTGAAATTTTAGTTGAATTAGTTGGAACTGCTTTGCTGAATTT
TTATTTTATGGATAGCTTATGCTGCTTTAATGCTTCGTACTCGAAGCTTG
TGGGAGGACGCTCGTCATCTACTGGTAAGGGGAGAAGCAATGTTGGATTA
GTCAAGTTTGGTTTCAGCTTGGTAAAAGGGAAAGCTAATCATCCCATGGA
GGATTATCATGTTGCAAAATTTGTGCAACTTCAAGGTCATGAATTAGGGT
TGTTTGCTATTTATGACGGCCATTTGGGAGAAACTGTGCCTGCCTACCTA
CAAAAGCATTTGTTTTCCAACATCCTAAAGGAGGAAGAGTTTTGGGTTGA
CCCCCAGAGATCTATCTCTAAAGCTTATGAGAAGACAGACCAAGCAATTC
TCTCA
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