FC931177

Overview
NameFC931177
Unique NameFC931177
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931177 vs. ExPASy Swiss-Prot
Match: P5CR2_RAT (Pyrroline-5-carboxylate reductase 2 OS=Rattus norvegicus GN=Pycr2 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.554e-27
Identity = 77/201 (38.31%), Postives = 108/201 (53.73%), Query Frame = 1
Query:   88 LGFIGAGKMAESIAKGMAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELAL 675
            +GFIGAG++A ++A+G   +GVL   +I  ++   +L    A   +GV +   N                        +I   +  + ++VS AAGV +    K L  +    + IR M NTP  V E ATV + G  A  EDG+L+ +L  SVG     +E L DAITGLSGSGPAY F+A++ALADGGV  G+PR LA+
Sbjct:    3 VGFIGAGQLACALARGFTAAGVLSAHKIIASSPEMDLPTVSALRKMGVNLTRSNKDTVRHSDVLFLAVKPHIIPFILDEIGADVQERHIVVSCAAGVTISSVEKKLMAFQPAPKVIRCMTNTPVVVREGATVYATGTHALVEDGKLLEQLMSSVGFCTEVEEDLIDAITGLSGSGPAYAFMALDALADGGVKMGVPRRLAV 203          
BLAST of FC931177 vs. ExPASy Swiss-Prot
Match: P5CR1_MOUSE (Pyrroline-5-carboxylate reductase 1, mitochondrial OS=Mus musculus GN=Pycr1 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.554e-27
Identity = 78/201 (38.81%), Postives = 105/201 (52.24%), Query Frame = 1
Query:   88 LGFIGAGKMAESIAKGMAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELAL 675
            +GFIGAG++A ++AKG   +GVL   +I  ++   +     A   IGV +   N                        +I   +  + ++VS AAGV +    K L  +    + IR M NTP  V E  TV + G  A  EDG L+ +L GSVG     +E L DA+TGLSGSGPAY F A++ALADGGV  GLPR LA+
Sbjct:    3 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDQATVSALRKIGVNLTPHNKETVRHSDVLFLAVKPHIIPFILDEIGANIEDRHIVVSCAAGVTINSIEKKLTAFQPAPKVIRCMTNTPVVVREGVTVYATGTHAQVEDGRLVEQLMGSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAV 203          
BLAST of FC931177 vs. ExPASy Swiss-Prot
Match: P5CR1_BOVIN (Pyrroline-5-carboxylate reductase 1, mitochondrial OS=Bos taurus GN=PYCR1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.641e-27
Identity = 77/201 (38.31%), Postives = 106/201 (52.74%), Query Frame = 1
Query:   88 LGFIGAGKMAESIAKGMAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELAL 675
            +GFIGAG++A ++AKG   +GV+   +I  ++   +L    A   +GV +   N                        +I   +  + ++VS AAGV +    K L  +    + IR M NTP  V E ATV + G  A  EDG L+ +L  SVG     +E L DA+TGLSGSGPAY F A++ALADGGV  GLPR LA+
Sbjct:    3 VGFIGAGQLAFALAKGFTAAGVVAAHKIMASSPDMDLATVSALRKMGVNLTHHNKETVQHSDVLFLAVKPHIIPFILDEIAANIEARHIVVSCAAGVTISSIEKKLTAFQPAPKVIRCMTNTPVVVREGATVYATGTHAQVEDGRLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAV 203          
BLAST of FC931177 vs. ExPASy Swiss-Prot
Match: P5CR2_MOUSE (Pyrroline-5-carboxylate reductase 2 OS=Mus musculus GN=Pycr2 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.062e-27
Identity = 77/201 (38.31%), Postives = 108/201 (53.73%), Query Frame = 1
Query:   88 LGFIGAGKMAESIAKGMAKSGVLPPDRI-CTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKL----KDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELAL 675
            +GFIGAG++A ++A+G   +GVL   +I  ++   +L    A   +GV +   N                        +I   +  + ++VS AAGV +    K L  +    + IR M NTP  V E ATV + G  A  EDG+L+ +L  SVG     +E L DAITGLSGSGPAY F+A++ALADGGV  G+PR LA+
Sbjct:    3 VGFIGAGQLACALARGFTAAGVLSAHKIIASSPDMDLPTVSALRRMGVNLTRSNKDTVRHSDVLFLAVKPHIIPFILDEIGADVQERHIVVSCAAGVTISSVEKKLMAFQPAPKVIRCMTNTPVVVREGATVYATGTHALVEDGKLLEQLMSSVGFCTEVEEDLIDAITGLSGSGPAYAFMALDALADGGVKMGVPRRLAV 203          
BLAST of FC931177 vs. ExPASy Swiss-Prot
Match: P5CR_METAC (Pyrroline-5-carboxylate reductase OS=Methanosarcina acetivorans GN=proC PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.917e-27
Identity = 70/197 (35.53%), Postives = 110/197 (55.84%), Query Frame = 1
Query:   88 LGFIGAGKMAESIAKGMAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQE-WTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELAL 675
            +GFIGAGKM  ++ +G  K+G++ P+ I  +       +D    +G++V +DN                         ++  ++ +KL++S+AAGV L   ++     +R +RVMPN  + V EAA+ ++ G  AT ED +   ++F +VG   +  E L DA+TGLSGSGPA+IF  IEA+ADG V  G+ R+ AL
Sbjct:    6 IGFIGAGKMGSALMQGTIKAGIVTPENIGASDVYEPFLKDLQAKLGIRVSTDNAVIVRESDILILAVKPQTLSSVLSNLKNEITSEKLVISIAAGVPLSTYEDALLEGTRVVRVMPNIAATVSEAASGIAPGKNATPEDLKAALEIFSAVGTAVQVPESLMDAVTGLSGSGPAFIFPVIEAMADGAVLEGMDRKSAL 202          
BLAST of FC931177 vs. ExPASy Swiss-Prot
Match: P5CR3_DANRE (Pyrroline-5-carboxylate reductase 3 OS=Danio rerio GN=pycrl PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.183e-22
Identity = 69/198 (34.85%), Postives = 102/198 (51.52%), Query Frame = 1
Query:   88 LGFIGAGKMAESIAKGMAKSGVLPPDRICTAVHS--NLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQEWT-GHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELA 672
            +GFIGAG MA  +A+G+  SG +PP  I  +  S  NL R   F+  GV V   N+                       +I   ++++ ++VS+AAG+ +  L+E     +  IR+MPN P  + E A ++S G  A E++  L+  L G  G +    E   DA  GLSGSG A++++  EALADG V  G+P  LA
Sbjct:   21 IGFIGAGNMAFGVAQGIIASGKVPPSNIIISAPSMNNLPR---FKEKGVSVTHSNHEVVGGSRLIFLAVKPHIIPQVLKEISQEVTKEHIIVSMAAGITIATLEELLPAGTHVIRIMPNLPCMLLEGALLLSCGSHAGEQEETLLKTLLGPCGLVEFGPESWIDAHVGLSGSGVAFVYVFAEALADGAVKMGMPSTLA 215          
BLAST of FC931177 vs. ExPASy Swiss-Prot
Match: P5CR3_RAT (Pyrroline-5-carboxylate reductase 3 OS=Rattus norvegicus GN=Pycrl PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.545e-22
Identity = 62/196 (31.63%), Postives = 104/196 (53.06%), Query Frame = 1
Query:   88 LGFIGAGKMAESIAKGMAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELA 672
            +GF+GAG+MAE+IA+G+ ++G +   ++  +  ++ K    F ++G +    N+                       ++ P+++ + ++VSVAAG+ L  ++E     +R +RV PN P  V E A VM+ G  A  ED +L+  L  + G+     E   D  TGLSGSG A++    EALA+G +  G+P +LA
Sbjct:   11 VGFVGAGRMAEAIAQGLIRAGKVEAKQVLASAPTD-KNLCHFRALGCQTTHSNHEVLQNCPLVIFATKPQVLPAVLAEVAPVVTTEHIIVSVAAGISLSSMEELLPPKTRVLRVSPNLPCVVQEGAMVMTRGHHAGNEDAKLLQNLLEACGQCIEVPESYVDIHTGLSGSGVAFVCTFSEALAEGAIKMGMPSDLA 205          
BLAST of FC931177 vs. ExPASy Swiss-Prot
Match: P5CR_SYNY3 (Pyrroline-5-carboxylate reductase OS=Synechocystis sp. (strain PCC 6803) GN=proC PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.871e-22
Identity = 67/198 (33.84%), Postives = 93/198 (46.97%), Query Frame = 1
Query:   79 SFILGFIGAGKMAESIAKGMAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTGHSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELA 672
            S  LG IG G MAE+I   +       P+ I        +R    ++  V+V  DN                         +    +R  L++S+ AGV L+ +Q+       IR MPNTP+ VG   T ++       +       +F +VG +    E L DA+TG+SGSGPAY+ L IEALADGGV AGLPR +A
Sbjct:    2 SIQLGIIGGGVMAEAILARLIAEKTYAPEEIIVGEPHGARRDYLQKTYQVRVSPDNQEAANVSEVLLLAVKPQVLDRVLASLAGGANRP-LVISILAGVSLQRIQKGFPDHAIIRAMPNTPATVGAGMTAIAANKMVEPDQLAKAKAIFSAVGNVVEVPENLMDAVTGVSGSGPAYVALMIEALADGGVLAGLPRAIA 198          
BLAST of FC931177 vs. ExPASy Swiss-Prot
Match: P5CR3_MACFA (Pyrroline-5-carboxylate reductase 3 OS=Macaca fascicularis GN=PYCRL PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.914e-21
Identity = 62/196 (31.63%), Postives = 102/196 (52.04%), Query Frame = 1
Query:   88 LGFIGAGKMAESIAKGMAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELA 672
            +GF+GAG+MA +IA+G+ ++G +   RI  +  ++ +    F+++G +    N                        ++ P+++ + +LVSVAAGV L  L+E    ++R +RV+PN P  V E A VM+ G      + +L+  L  + G+     E   D  TGLSGSG A++    EALA+G +  G+P  LA
Sbjct:   11 VGFVGAGRMAGAIAQGLIRAGKVEAQRIVASAPTD-RNLCHFQALGCQTTHSNQEVLQSCLLVIFATKPHILPAVVAEVAPVVTAEHILVSVAAGVSLSTLEELLPPNTRVLRVLPNLPCVVQEGAIVMARGRHVGSSETKLLQHLLEACGRCEEVPEAYVDIHTGLSGSGVAFVCAFSEALAEGAIKMGMPSSLA 205          
BLAST of FC931177 vs. ExPASy Swiss-Prot
Match: P5CR3_MOUSE (Pyrroline-5-carboxylate reductase 3 OS=Mus musculus GN=Pycrl PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.970e-21
Identity = 60/196 (30.61%), Postives = 102/196 (52.04%), Query Frame = 1
Query:   88 LGFIGAGKMAESIAKGMAKSGVLPPDRICTAVHSNLKRRDAFESIGVKVLSDNNAXXXXXXXXXXXXXXXXXXXXAMQIRPLLSRKKLLVSVAAGVKLKDLQEWTG-HSRFIRVMPNTPSAVGEAATVMSLGGTATEEDGELIGKLFGSVGKIWRADEKLFDAITGLSGSGPAYIFLAIEALADGGVAAGLPRELA 672
            +GF+GAG+MAE+IA+G+ ++G +   ++  +  ++      F ++G +    N+                       ++ P+++ + ++VSVAAG+ L  ++     ++R +RV PN P  V E A VM+ G  A  +D EL+  L  + G+     E   D  TGLSGSG A++    EALA+G +  G+P  LA
Sbjct:   11 VGFVGAGRMAEAIARGLIQAGKVEAKQVLASAPTD-NNLCHFRALGCQTTHSNHEVLQNCPLVIFATKPQVLPTVLAEVAPIVTTEHIIVSVAAGISLSTMEGLLPPNTRVLRVSPNLPCVVQEGAMVMARGHHAGNDDAELLQNLLEACGQCIEVPESYVDIHTGLSGSGVAFVCTFSEALAEGAIKMGMPSGLA 205          
The following BLAST results are available for this feature:
BLAST of FC931177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
P5CR2_RAT3.554e-2738.31Pyrroline-5-carboxylate reductase 2 OS=Rattus norv... [more]
P5CR1_MOUSE3.554e-2738.81Pyrroline-5-carboxylate reductase 1, mitochondrial... [more]
P5CR1_BOVIN4.641e-2738.31Pyrroline-5-carboxylate reductase 1, mitochondrial... [more]
P5CR2_MOUSE6.062e-2738.31Pyrroline-5-carboxylate reductase 2 OS=Mus musculu... [more]
P5CR_METAC7.917e-2735.53Pyrroline-5-carboxylate reductase OS=Methanosarcin... [more]
P5CR3_DANRE1.183e-2234.85Pyrroline-5-carboxylate reductase 3 OS=Danio rerio... [more]
P5CR3_RAT1.545e-2231.63Pyrroline-5-carboxylate reductase 3 OS=Rattus norv... [more]
P5CR_SYNY35.871e-2233.84Pyrroline-5-carboxylate reductase OS=Synechocystis... [more]
P5CR3_MACFA2.914e-2131.63Pyrroline-5-carboxylate reductase 3 OS=Macaca fasc... [more]
P5CR3_MOUSE4.970e-2130.61Pyrroline-5-carboxylate reductase 3 OS=Mus musculu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34102C09EF PostHarvP1 Citrus clementina cDNA clone C34102C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931177 ID=FC931177; Name=FC931177; organism=Citrus clementina; type=EST; length=679bp
GGAGATATTAGGGGGAAAAAAACTGTTCAGAACAGCGACGACGAGGCGAT
CATGGACGCATTTCCTATTCCTGCCGAAAGCTTCATTCTAGGCTTCATCG
GAGCCGGCAAAATGGCGGAGAGCATTGCCAAAGGAATGGCGAAATCGGGC
GTGTTGCCGCCCGATCGTATCTGCACCGCCGTCCACTCTAATCTCAAACG
CCGTGATGCTTTTGAGTCCATCGGCGTCAAAGTATTATCCGACAATAACG
CCGTTGTTGAATACAGCGATGTGGTTGTTTTCTCTGTGAAACCGCAAGTA
GTTAAAGATGTGGCCATGCAGATAAGGCCGCTGTTATCACGGAAGAAGCT
TTTGGTTTCTGTTGCTGCAGGAGTGAAATTGAAAGACCTTCAGGAATGGA
CTGGTCACAGCCGGTTTATTAGAGTTATGCCTAATACACCTTCTGCTGTA
GGTGAGGCTGCAACAGTTATGAGCTTGGGAGGAACTGCAACTGAAGAGGA
TGGGGAACTAATCGGTAAATTATTCGGATCAGTTGGCAAGATATGGCGAG
CTGATGAGAAATTGTTTGATGCAATCACGGGCCTGAGTGGCAGCGGTCCA
GCATATATATTTTTAGCAATTGAAGCTTTGGCTGATGGAGGTGTAGCTGC
AGGGCTACCGCGAGAACTTGCACTTGGTC
back to top