FC931179

Overview
NameFC931179
Unique NameFC931179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931179 vs. ExPASy Swiss-Prot
Match: ISP4_SCHPO (Sexual differentiation process protein isp4 OS=Schizosaccharomyces pombe GN=isp4 PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 5.856e-47
Identity = 91/215 (42.33%), Postives = 136/215 (63.26%), Query Frame = 3
Query:   18 FALAWIVTLPIGVIQATTNQQPGYDIIAQFMIGYVLPGKPIANLLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCMYTAQLVGTIVSGVVNLGVAWWMLESIENICDVESLHPDSQWTCPKYRVTFDASVIWGLIGPRRLFGPGGMYRNLVWLFLVGAVLPVPVWVLSKVFPEKKWIPLINIPVISYGFAGMPPATPTNIASWLITGMIFNYFV 662
            F+  W +  PIG++QA TN Q G ++  +F++GY+ PG+P+A ++FK  G I+    L+F +DLK GHYMK+PPR M+  Q++ TI S  V +GV  W L +I+N+C  +   PD+ +TCP   V F++SVIWG+IGP+R+F     Y  L + +L G +  +  W L K +P+K W  L N P+I  G   +PPATP N  +W   G+ FNY++
Sbjct:  499 FSAVWFI--PIGIVQAITNIQLGLNVFTEFIVGYMYPGRPLAMMIFKTVGYITMTQGLAFAADLKFGHYMKLPPRIMFYTQMIATIWSCFVQIGVLDWALGNIDNVCQAD--QPDN-YTCPNATVFFNSSVIWGVIGPKRMFSGKNTYTGLQYFWLAGVLGTILFWALWKKWPQKWWGQL-NGPLIFGGTGYIPPATPVNYLAWSGIGLFFNYYL 707          
BLAST of FC931179 vs. ExPASy Swiss-Prot
Match: OPT1_YEAST (Oligopeptide transporter 1 OS=Saccharomyces cerevisiae GN=OPT1 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.383e-40
Identity = 84/218 (38.53%), Postives = 131/218 (60.09%), Query Frame = 3
Query:   12 FAFALAWIVTL----PIGVIQATTNQQPGYDIIAQFMIGYVLPGKPIANLLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCMYTAQLVGTIVSGVVNLGVAWWMLESIENICDVESLHPDSQWTCPKYRVTFDASVIWGLIGPRRLFGPGGMYRNLVWLFLVGAVLPVPVWVLSKVFPEKKWIPLINIPVISYGFAGMPPATPTNIASWLITGMIFN 653
            +AF +A +++L    P G+++A TNQ  G +II + + GY+LP +P+ANLLFK+YG I     L+   DLKL  YMK+ PR ++  Q+  TI+SG+VN+GV  WM+ +I+ +C  +     + +TC   R  F+AS+IW L  P+ LF  G +Y  L+W FL+G + P+ V+ +   FP+ K+   I+ PV   G   +PP+TP N + +       N
Sbjct:  510 WAFVIAILISLVNFIPQGILEAMTNQHVGLNIITELICGYMLPLRPMANLLFKLYGFIVMRQGLNLSRDLKLAMYMKVSPRLIFAVQIYATIISGMVNVGVQEWMMHNIDGLCTTDQ---PNGFTCANGRTVFNASIIWSL--PKYLFSSGRIYNPLMWFFLIGLLFPLAVYAVQWKFPKFKFAKHIHTPVFFTGPGNIPPSTPYNYSLFFAMSFCLN 722          
BLAST of FC931179 vs. ExPASy Swiss-Prot
Match: YQJC_SCHPO (Uncharacterized oligopeptide transporter C1840.12 OS=Schizosaccharomyces pombe GN=SPCC1840.12 PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.958e-26
Identity = 66/213 (30.99%), Postives = 112/213 (52.58%), Query Frame = 3
Query:   42 LPIGVIQA----TTNQQPGYDIIAQFMIGYVLPGKPIANLLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCMYTAQLVGTIVSGVVNLGVAWWMLESIENICDVESLHPDSQWTCPKYRVTFDASVIWGLIGPRRLFGPGGMYRNLVWLFLVGAVLPVPVWVLSKVFPEKKWIPLINIPVISYGFAGMPPATPTNIASWLITGMIFNYFVFR 668
            +P+ +I++    T + Q  ++I+A F       G+P+A L F  +G  +  HA+      K+GHYMK+PPR +        I S +VN  V  W++  + ++C   + + ++  TC   +  F++ +IWGL+G   +F   G Y  ++W FLVGAV+ V V++L   FP+  W   +N  ++  G A +P  T  N ++W      FNY + R
Sbjct:  516 IPLSLIESRSSFTISMQAFFEIVAAFWFN----GQPMALLYFYSFGFGTLQHAMHMTQSAKIGHYMKVPPRLVAALLFTSGIWSSLVNSAVTGWIMYHVRDVC---TSNAENNMTCRSPKTQFNSHLIWGLVG-NHIFSSDGRYSFVMWFFLVGAVVSVVVYLLQISFPKSSW-KHVNPALLLGGAAQIPSVTGINYSTWAAVAFCFNYLIRR 719          
BLAST of FC931179 vs. ExPASy Swiss-Prot
Match: OPT2_YEAST (Oligopeptide transporter 2 OS=Saccharomyces cerevisiae GN=OPT2 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.958e-26
Identity = 66/211 (31.28%), Postives = 116/211 (54.98%), Query Frame = 3
Query:   30 WIVTLPIGVIQATTNQQPGYDIIAQFMIGYVLPGKPIANLLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCMYTAQLVGTIVSGVVNLGVAWWMLESIENICDVESLHPDSQWTCPKYRVTFDASVIWGLIGPRRLFGPGGMYRNLVWLFLVGAVLPV--PVWVLSKVFPEKKWIPLINIPVISYGFAGMPPATPTNIASWLITGMIFNY 656
            ++  +P  ++QATT    G +++ + ++GY LPG PIA ++ K +G      A +++S+LK+ HY KIPP  ++  Q V   +   VNLGV  W + +I++ C   + H ++++TCP     ++ASV+WG IGP+R+F    +Y    W +L+GA + +   VW     F  + + P++ +        GM   +P     +  +GMI +Y
Sbjct:  594 FVFLIPTTILQATTGYSFGLNLLIEMVMGYALPGNPIAIMILKAFGYNIDGQADNYVSNLKIAHYCKIPPMALFRGQCVIVFIQIFVNLGVLNWQISNIKDFC---TPHQNAKFTCPDAVTYYNASVVWGAIGPKRIF--NYIYPIFKWCWLIGACIGIFFGVWKRWGKFYPRYFDPMLFV-------GGMLNMSPPYNLMYYTSGMIVSY 792          
The following BLAST results are available for this feature:
BLAST of FC931179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
ISP4_SCHPO5.856e-4742.33Sexual differentiation process protein isp4 OS=Sch... [more]
OPT1_YEAST2.383e-4038.53Oligopeptide transporter 1 OS=Saccharomyces cerevi... [more]
YQJC_SCHPO1.958e-2630.99Uncharacterized oligopeptide transporter C1840.12 ... [more]
OPT2_YEAST1.958e-2631.28Oligopeptide transporter 2 OS=Saccharomyces cerevi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34102C11EF PostHarvP1 Citrus clementina cDNA clone C34102C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931179 ID=FC931179; Name=FC931179; organism=Citrus clementina; type=EST; length=724bp
GGAGGAAGCTCTTTGCTTTTGCCTTGGCTTGGATTGTTACCCTTCCCATT
GGGGTCATTCAAGCAACTACCAACCAGCAACCTGGATATGACATCATAGC
ACAATTCATGATCGGGTATGTTCTACCAGGAAAACCAATTGCAAATCTGC
TTTTCAAGATTTACGGACGAATCAGTACCATCCATGCTCTATCTTTCTTA
TCTGACCTTAAACTTGGGCACTACATGAAAATTCCTCCACGGTGCATGTA
CACTGCTCAGCTGGTTGGTACTATAGTGTCTGGTGTGGTGAACCTTGGAG
TGGCATGGTGGATGTTGGAGAGCATTGAGAACATTTGTGACGTCGAATCA
CTTCATCCCGACAGCCAATGGACTTGCCCCAAGTACAGAGTAACATTTGA
TGCTTCAGTAATATGGGGTCTGATTGGACCAAGACGGTTGTTTGGTCCTG
GAGGAATGTACCGTAATTTGGTATGGCTATTCCTCGTAGGAGCCGTCTTG
CCAGTTCCTGTTTGGGTACTGAGCAAAGTGTTCCCTGAAAAGAAATGGAT
TCCTTTGATAAACATTCCCGTTATATCCTATGGCTTTGCCGGAATGCCAC
CAGCAACTCCCACCAACATAGCAAGCTGGCTTATCACCGGAATGATCTTC
AACTACTTTGTGTTCCGATACACAAGCGTTGGTGGCAGAAGTATACTATG
ATCTGTCAGCAGCTCTGGATGCTG
back to top