FC931185

Overview
NameFC931185
Unique NameFC931185
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931185 vs. ExPASy Swiss-Prot
Match: DCUP_MANSM (Uroporphyrinogen decarboxylase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=hemE PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.575e-29
Identity = 67/157 (42.68%), Postives = 95/157 (60.51%), Query Frame = 1
Query:  160 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSK 630
            LKA+  E V+  PVW+MRQAGRY+  Y+    +   F     N DL  E++LQP   ++ D  ILFSDILT    M +      G+GP    PI T + V+ +   DPE+ + YV  A+  +R E+N E  ++GF G+P+TLA+Y+VEGGS+K F+K
Sbjct:   10 LKALLREPVDMTPVWMMRQAGRYLPEYKATRAEAGDFMSLCRNADLACEVTLQPLRRYELDAAILFSDILTIPDAMGLGLTFGAGEGPKFDRPIETKSAVENLPIPDPEQELQYVMNAVRTIRRELNGEVPLIGFSGSPWTLATYMVEGGSTKAFTK 166          
BLAST of FC931185 vs. ExPASy Swiss-Prot
Match: DCUP_GEOUR (Uroporphyrinogen decarboxylase OS=Geobacter uraniireducens (strain Rf4) GN=hemE PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.575e-29
Identity = 71/156 (45.51%), Postives = 98/156 (62.82%), Query Frame = 1
Query:  160 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFS 627
            L A  G+ V+R PVWLMRQAGRY+  Y  +  K  +F E  +  +L  E+S+QP  +   D  ILFSDILTP+  M +  D + G  PV   PI T A+V+++R    E+ VPYV + + ILR E+ N+  ++GF GAPFTLA Y+VEG  SK ++
Sbjct:    6 LDACWGKPVDRTPVWLMRQAGRYLPDYMRVRSKC-TFLELCKTPELAAEVSIQPVDILGVDAAILFSDILTPVEPMGMALDFVPG--PVFEHPIRTMADVEKLRIPQMEQDVPYVLETIKILRRELANKVPLIGFGGAPFTLACYMVEGKGSKDWA 158          
BLAST of FC931185 vs. ExPASy Swiss-Prot
Match: DCUP_DICNV (Uroporphyrinogen decarboxylase OS=Dichelobacter nodosus (strain VCS1703A) GN=hemE PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.575e-29
Identity = 63/158 (39.87%), Postives = 97/158 (61.39%), Query Frame = 1
Query:  154 MLLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFS 627
            + L+ +RGE VER PVW+MRQAGRY+  Y+ +  K P F +   N +L  E++LQP   F  D  ILFSDILT    M +    + G+GP    P+ + A ++ +    P  S+ YV  A++  +  +N+   ++GF G+P+TLA+Y++EGG+SK F+
Sbjct:    5 LFLRVLRGEKVERTPVWIMRQAGRYLAEYRKLRAKVPHFLDVCRNPELACELALQPLQRFPLDAAILFSDILTIPDAMGLGLSFVAGEGPQFAKPLRSSAAIESL-TLPPSGSLDYVFAAVSATKRALNDRVPLIGFAGSPWTLAAYMIEGGASKDFA 161          
BLAST of FC931185 vs. ExPASy Swiss-Prot
Match: DCUP_ACTPJ (Uroporphyrinogen decarboxylase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=hemE PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.575e-29
Identity = 68/157 (43.31%), Postives = 92/157 (58.60%), Query Frame = 1
Query:  160 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSK 630
            LKA+  E V+  PVW+MRQAGRY+  Y+    +   F     N DL  E++LQP   +  D  ILFSDILT    M +      G+GP    PI   A+VD +   DPE  + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+K
Sbjct:   10 LKALLREPVDMTPVWMMRQAGRYLPEYKATRAEAGDFMALCRNADLACEVTLQPLRRYALDAAILFSDILTVPDAMGLGLSFGAGEGPKFARPIENKAQVDNLPIPDPESELQYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTK 166          
BLAST of FC931185 vs. ExPASy Swiss-Prot
Match: DCUP_ACTP7 (Uroporphyrinogen decarboxylase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=hemE PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.575e-29
Identity = 68/157 (43.31%), Postives = 92/157 (58.60%), Query Frame = 1
Query:  160 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSK 630
            LKA+  E V+  PVW+MRQAGRY+  Y+    +   F     N DL  E++LQP   +  D  ILFSDILT    M +      G+GP    PI   A+VD +   DPE  + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+K
Sbjct:   10 LKALLREPVDMTPVWMMRQAGRYLPEYKATRAEAGDFMALCRNADLACEVTLQPLRRYALDAAILFSDILTVPDAMGLGLSFGAGEGPKFARPIENKAQVDNLPIPDPESELQYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTK 166          
BLAST of FC931185 vs. ExPASy Swiss-Prot
Match: DCUP_ACTP2 (Uroporphyrinogen decarboxylase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=hemE PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.575e-29
Identity = 68/157 (43.31%), Postives = 92/157 (58.60%), Query Frame = 1
Query:  160 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSK 630
            LKA+  E V+  PVW+MRQAGRY+  Y+    +   F     N DL  E++LQP   +  D  ILFSDILT    M +      G+GP    PI   A+VD +   DPE  + YV  A+  +R E+  E  ++GF G+P+TLA+Y+VEGGSSK F+K
Sbjct:   10 LKALLREPVDMTPVWMMRQAGRYLPEYKATRAEAGDFMALCRNADLACEVTLQPLRRYALDAAILFSDILTVPDAMGLGLSFGAGEGPKFARPIENKAQVDNLPIPDPESELQYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGSSKAFTK 166          
BLAST of FC931185 vs. ExPASy Swiss-Prot
Match: DCUP_XYLFT (Uroporphyrinogen decarboxylase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=hemE PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.057e-29
Identity = 65/158 (41.14%), Postives = 100/158 (63.29%), Query Frame = 1
Query:  157 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSK 630
            LL+A+R + V+R P+WLMRQAGRY+  Y+   +   SF + ++  +L  EI+LQP   F  D  ILFSDIL     M +    I+G+GP +  PI   A + Q+   D E  + YV  A+ ++R+E++N   ++GF G+P+TLA Y++EGGSSK +++
Sbjct:    7 LLRALRRDTVDRTPIWLMRQAGRYLPEYRAARQHAGSFLKMAKTPELACEITLQPLRRFPLDAAILFSDILMIPDAMGLELHFIEGEGPRLGKPIRDAAAITQLAVPDMETELRYVMDAVRLIRKELDNSVPLIGFSGSPWTLACYMIEGGSSKEYAR 164          
BLAST of FC931185 vs. ExPASy Swiss-Prot
Match: DCUP_XYLF2 (Uroporphyrinogen decarboxylase OS=Xylella fastidiosa (strain M23) GN=hemE PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.057e-29
Identity = 65/158 (41.14%), Postives = 100/158 (63.29%), Query Frame = 1
Query:  157 LLKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSK 630
            LL+A+R + V+R P+WLMRQAGRY+  Y+   +   SF + ++  +L  EI+LQP   F  D  ILFSDIL     M +    I+G+GP +  PI   A + Q+   D E  + YV  A+ ++R+E++N   ++GF G+P+TLA Y++EGGSSK +++
Sbjct:    7 LLRALRRDTVDRTPIWLMRQAGRYLPEYRAARQHAGSFLKMAKTPELACEITLQPLRRFPLDAAILFSDILMIPDAMGLELHFIEGEGPRLGKPIRDAAAITQLAVPDMETELRYVMDAVRLIRKELDNSVPLIGFSGSPWTLACYMIEGGSSKEYAR 164          
BLAST of FC931185 vs. ExPASy Swiss-Prot
Match: DCUP_VIBPA (Uroporphyrinogen decarboxylase OS=Vibrio parahaemolyticus GN=hemE PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.057e-29
Identity = 66/157 (42.04%), Postives = 98/157 (62.42%), Query Frame = 1
Query:  160 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSK 630
            L+A+  E V+  PVW+MRQAGRY+  Y+    +   F    +N +L  E++LQP   F  D  ILFSDILT    M +      G+GPV  +PI   A+V+++   DPE  + YV  A+  +R+++N +  ++GF G+P+TLA+Y+VEGGSSK F+K
Sbjct:   10 LRALLKEPVDYTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELASEVTLQPLRRFPLDAAILFSDILTIPDAMGLGLRFAAGEGPVFDNPITCKADVEKIGLPDPEGELQYVMNAVRQIRKDLNGDVPLIGFSGSPWTLATYMVEGGSSKAFTK 166          
BLAST of FC931185 vs. ExPASy Swiss-Prot
Match: DCUP_VIBHB (Uroporphyrinogen decarboxylase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=hemE PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.687e-29
Identity = 66/157 (42.04%), Postives = 97/157 (61.78%), Query Frame = 1
Query:  160 LKAVRGEDVERPPVWLMRQAGRYMKSYQIICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPINTDAEVDQVREFDPEESVPYVGKALTILREEVNNEAAVLGFVGAPFTLASYVVEGGSSKHFSK 630
            L+A+  E V+  PVW+MRQAGRY+  Y+    +   F    +N +L  E++LQP   F  D  ILFSDILT    M +      G+GPV   PI   A+V+++   DPE  + YV  A+  +R+++N +  ++GF G+P+TLA+Y+VEGGSSK F+K
Sbjct:   10 LRALLKEPVDYTPVWMMRQAGRYLPEYKATRAQAGDFMSLCKNAELASEVTLQPLRRFPLDAAILFSDILTIPDAMGLELRFAAGEGPVFDKPITCKADVEKIGLPDPEGELQYVMNAVRQIRKDLNGDVPLIGFSGSPWTLATYMVEGGSSKAFTK 166          
The following BLAST results are available for this feature:
BLAST of FC931185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DCUP_MANSM1.575e-2942.68Uroporphyrinogen decarboxylase OS=Mannheimia succi... [more]
DCUP_GEOUR1.575e-2945.51Uroporphyrinogen decarboxylase OS=Geobacter uranii... [more]
DCUP_DICNV1.575e-2939.87Uroporphyrinogen decarboxylase OS=Dichelobacter no... [more]
DCUP_ACTPJ1.575e-2943.31Uroporphyrinogen decarboxylase OS=Actinobacillus p... [more]
DCUP_ACTP71.575e-2943.31Uroporphyrinogen decarboxylase OS=Actinobacillus p... [more]
DCUP_ACTP21.575e-2943.31Uroporphyrinogen decarboxylase OS=Actinobacillus p... [more]
DCUP_XYLFT2.057e-2941.14Uroporphyrinogen decarboxylase OS=Xylella fastidio... [more]
DCUP_XYLF22.057e-2941.14Uroporphyrinogen decarboxylase OS=Xylella fastidio... [more]
DCUP_VIBPA2.057e-2942.04Uroporphyrinogen decarboxylase OS=Vibrio parahaemo... [more]
DCUP_VIBHB2.687e-2942.04Uroporphyrinogen decarboxylase OS=Vibrio harveyi (... [more]

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Properties
Property NameValue
Genbank descriptionC34102D05EF PostHarvP1 Citrus clementina cDNA clone C34102D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931185 ID=FC931185; Name=FC931185; organism=Citrus clementina; type=EST; length=649bp
GAAAGGCCCAACACAATGCCCTGCTCTTCAATTTCGGCTATTTCAAATTT
TCCACTGTATTCCTCTTCTCACTCCAATTCAAACTCCCGATATGTCCGCT
GCGCCGTCGGAGGGACTGTAGCGGAACCGAAAAATGTTTCTGTTGCCGAA
CCCATGTTGCTGAAAGCTGTTCGAGGAGAAGATGTTGAAAGACCTCCAGT
TTGGCTTATGAGGCAAGCAGGGAGGTACATGAAGAGTTATCAAATCATCT
GCGAGAAGTATCCTTCATTTCGTGAAAGATCAGAAAATGTTGATCTTGTT
GTGGAAATTTCTCTTCAGCCGTGGCATGTTTTTAAGCCGGATGGTGTCAT
TTTATTCTCAGACATTTTAACTCCTCTTTCTGGGATGAATATACCTTTTG
ACATTATCAAGGGTAAGGGTCCTGTCATATTTGATCCTATAAACACAGAT
GCAGAAGTTGACCAAGTGAGAGAATTTGATCCTGAGGAGTCAGTTCCATA
TGTTGGGAAAGCATTGACAATCTTGCGAGAAGAGGTAAACAATGAAGCAG
CAGTTCTGGGTTTTGTTGGGGCTCCTTTCACCCTGGCGTCATATGTGGTT
GAGGGTGGTTCATCGAAGCACTTCAGCAAAAAAAGCGACTAGCTTTCTC
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