FC931187

Overview
NameFC931187
Unique NameFC931187
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC931187 vs. ExPASy Swiss-Prot
Match: LCYB_SYNE7 (Lycopene beta cyclase OS=Synechococcus elongatus (strain PCC 7942) GN=crtL PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.450e-15
Identity = 45/163 (27.61%), Postives = 78/163 (47.85%), Query Frame = 2 
Query:  206 YDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDP-SPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKPRHHGYHIAHGIL 691
            +D ++IG+GPAGL +A +++ R  +KV  + P  P   W N YG+W  E + +GL       W     +  +   ++    YG   R  L+   L  C   G+++   K   + H    S +    G E++A L+VD +G  ++F++        Y  A+GI+
Sbjct:    2 FDALVIGSGPAGLAIAAELAQR-GLKVQGLSPVDPFHPWENTYGIWGPELDSLGLEHLFGHRWSNCVSYFGEAPVQH-QYNYGLFDRAQLQQHWLRQCEQGGLQWQLGKAAAIAHDSHHSCVTTAAGQELQARLVVDTTGHQAAFIQRPHSDAIAYQAAYGII 162
The following BLAST results are available for this feature:
BLAST of FC931187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LCYB_SYNE71.450e-1527.61Lycopene beta cyclase OS=Synechococcus elongatus (... [more]

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Properties
Property NameValue
Genbank descriptionC34102D08EF PostHarvP1 Citrus clementina cDNA clone C34102D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931187 ID=FC931187; Name=FC931187; organism=Citrus clementina; type=EST; length=692bp
GCAAATAATTGATTCAACATCATCACCTTCATTTTCCCTATTTCCATTAG
GCCGCCAAAATGCATGTTCAAGAAAGGCGGATCATCATCATCATCACAGG
ATCCGGACAAGCAAGTTTGGTAACTTCCTAGAGTTGACACCGGAGTCGGT
ACCTGAATTCTTAGACTTTGATCTCCCCTGGTTTCATCCGTCCGATCGTA
TTCGATATGACGTGATCATCATTGGCACTGGACCAGCCGGCCTCCGTCTA
GCTGAGCAAGTCTCATCGCGTCATAGTGTCAAGGTATGTTGTGTTGATCC
TTCACCTCTTTCTACGTGGCCTAACAACTATGGAGTTTGGGTTGATGAGT
TTGAAGACATAGGACTTGTAGACTGTTTGGACAAAACTTGGCCGATGACT
TGTGTTTTTATTAATGATCACAAGACCAAGTATCTAGACAGGCCCTACGG
TCGTGTTAGTAGAAATATTTTGAAGACAAAGTTATTAGAGAATTGTGTTT
CAAATGGAGTTAAGTTTCATAAGGCTAAAGTTTGGCACGTGAATCATCAG
GAGTTCGAGTCTTCGATTGTTTGTGATGATGGGAATGAGATTAAGGCTAG
CTTGATTGTTGATGCTAGTGGCTTTGCTAGTAGTTTTGTTGAGTATGATA
AGCCAAGACACCATGGATACCACATTGCTCATGGGATTTTAG
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