FC931189

Overview
NameFC931189
Unique NameFC931189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11394 contig Ccv1_Contig11394:887..1520. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931189 vs. ExPASy Swiss-Prot
Match: AMT_CORGL (Ammonia channel OS=Corynebacterium glutamicum GN=amt PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.396e-11
Identity = 49/186 (26.34%), Postives = 84/186 (45.16%), Query Frame = 3
Query:   66 GFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCKLTLPEPTRGAFYGGRGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEE 623
            GFNGG    A+  +S  ++ + +AAA  ++ +  ++ +F GKP+  G+  G + GLV ITP A  V    A  +G L   + +    I  KK     +VDD+  VF  H +           F +P       P    G F+GG   + + ++ +  +  + +    T +I   +  F+ LR+  E
Sbjct:  217 GFNGGTAGGANFLASYVVVTSLIAAAGGMMGFMLVERVFSGKPTFFGSATGTIAGLVAITPAADAVSPLGAFAVGALGAVVSF--WAISWKKG---HRVDDSFDVFAVHGMAGIAGALFVMLFGDP-----LAPAGVSGVFFGGELSLLW-REPLAIIVTLTYAFGVTWLIATILNKFMTLRITSE 391          
BLAST of FC931189 vs. ExPASy Swiss-Prot
Match: AMT3_SCHPO (Ammonium transporter 3 OS=Schizosaccharomyces pombe GN=amt3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.823e-11
Identity = 52/177 (29.38%), Postives = 77/177 (43.50%), Query Frame = 3
Query:   69 FNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQLCK---LTLPEPTRGAFYGGRGGVQFLKQIVGALFVIAWNLVSTTIILLAI 590
            FN G     +I ++  + NT ++++   L W  +D I + K S IG  +G + GLV ITP  G V  W A   GI    +P +    LH     +  VD+TL VF+ H +            A P +      T+ +      +  + G QF     G   V AW+ V T II L +
Sbjct:  287 FNSGTLLTVNIRTAYIMTNTLISSSFGALTWAIIDYIRYRKFSTIGICEGAIAGLVGITPACGFVFPWGAAAGGI----VPALVCNFLHDLNEWI-GVDETLRVFNLHGIGGIVGSIVLGVVAHPDVAASDGATVIDGGWAVHHWKQMGYQF----AGFTSVAAWSFVITAIICLLV 454          
The following BLAST results are available for this feature:
BLAST of FC931189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
AMT_CORGL1.396e-1126.34Ammonia channel OS=Corynebacterium glutamicum GN=a... [more]
AMT3_SCHPO1.823e-1129.38Ammonium transporter 3 OS=Schizosaccharomyces pomb... [more]

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Properties
Property NameValue
Genbank descriptionC34102D10EF PostHarvP1 Citrus clementina cDNA clone C34102D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931189 ID=FC931189; Name=FC931189; organism=Citrus clementina; type=EST; length=634bp
GGTTTCCTCCGAATAATGTGCTGCTCATGCTTGCGGGAGCCGGGCTGCTG
TGGATGGGATGGTCGGGTTTCAACGGTGGGGCTCCTTATGCTGCTCATAT
CGCCTCTTCGATCGCTATTCTAAACACAAATGTAGCGGCGGCCACGAGCC
TTCTTGTTTGGACATGTCTTGATGTTATCTTCTTTGGGAAGCCTTCAGTT
ATCGGAGCTGTTCAGGGCATGATGACTGGCCTTGTTTGCATCACCCCAGG
AGCTGGGCTGGTACAATCATGGGCGGCTATTGTAATGGGCATTCTTTCTG
GTAGCATTCCATGGGTAACTATGATGATTCTTCACAAGAAGTGTAGTCTT
CTTCAACAGGTGGATGACACACTGGCTGTGTTTCACACGCACGCGGTGAC
TGGGCTGTTGGGCGGGCTACTGACCGGGCTATTTGCGGAGCCACAACTGT
GCAAGCTCACACTACCAGAGCCCACAAGAGGAGCATTCTACGGGGGGAGA
GGCGGGGTGCAATTTCTGAAGCAGATTGTTGGGGCTCTGTTTGTTATCGC
CTGGAATTTAGTTTCCACAACAATCATTCTCCTGGCAATAAGGATATTCA
TTCCATTGAGAATGCCTGAAGAGCAGCTCGCGAT
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