FC931196
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGO1C_ORYSJ (Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.938e-21 Identity = 41/89 (46.07%), Postives = 54/89 (60.67%), Query Frame = 2 Query: 398 LKALKLSKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKF---GNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVR 655 +K +K + Y ++P + FGI IS A VE R+LPAPRLK+ G +D PR G+WN NKK+V K+ W VNF AR S+VR Sbjct: 494 IKMVKHNAYQDDPYAKEFGIKISDRLASVEARILPAPRLKYNETGREKDCLPRVGQWNMMNKKMVNGGKVRSWMCVNF-ARNVQESVVR 581 HSP 2 Score: 46.2098 bits (108), Expect = 3.938e-21 Identity = 27/81 (33.33%), Postives = 48/81 (59.26%), Query Frame = 3 Query: 60 DDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQER 302 D+ G V+ +V YF ++++ LPC+ V +R Y+P+E+C++V QRY+K L Q +L+E++ Q P++R Sbjct: 417 DEGGTVK----SVVQYFQETYGFAIQHTY-LPCLTV---QRLNYLPMEVCKIVEGQRYSKRLNQNQIRALLEETCQHPRDR 489
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGO11_ORYSJ (Protein argonaute 11 OS=Oryza sativa subsp. japonica GN=AGO11 PE=2 SV=2) HSP 1 Score: 62.7734 bits (151), Expect = 6.676e-21 Identity = 32/99 (32.32%), Postives = 56/99 (56.57%), Query Frame = 2 Query: 416 SKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKF---GNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSA---RCDIRSLVRDLIKCGENEGILI 694 + Y N+ R FGI ++ A V+ RVLPAP LK+ G + +P G+WN NNK+++ I WA + F++ ++R+ ++L++ + G+ I Sbjct: 400 NNYGNDYHAREFGIGVTNQLALVDARVLPAPMLKYHDSGQEKVCNPSIGQWNMNNKRMLNGGSINYWACLTFASCVRLAEVRTFCKELVRVCNSIGMQI 498 HSP 2 Score: 58.5362 bits (140), Expect = 6.676e-21 Identity = 28/81 (34.57%), Postives = 45/81 (55.56%), Query Frame = 3 Query: 60 DDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQER 302 D DG ++V YF + L+Y + PC+ G RPTY+P+E+C +V QRY++ L Q ++ +R+ P+ER Sbjct: 314 DQDGT----RVSVVQYFNRQYSYSLKYI-NWPCLQAGSDSRPTYLPMEVCRIVKGQRYSRKLNECQVTRMLRLARETPEER 389
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGO12_ORYSJ (Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2) HSP 1 Score: 64.3142 bits (155), Expect = 7.090e-20 Identity = 34/103 (33.01%), Postives = 55/103 (53.40%), Query Frame = 2 Query: 398 LKALKLSKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKF---GNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARC---DIRSLVRDLIKCGENEGI 688 ++ + + Y N+ + FGI ++ A V+ RVLP PRLK+ G + +P G+WN NK++V I W ++F++R DIR DL+ N G+ Sbjct: 547 IEIVNTNSYGNDDCAKEFGIKVANQLAVVDARVLPTPRLKYHDSGREKVCNPSVGQWNMINKRMVNGGCINHWTCLSFASRMHVNDIRMFCEDLVGMCNNIGM 649 HSP 2 Score: 53.5286 bits (127), Expect = 7.090e-20 Identity = 24/78 (30.77%), Postives = 44/78 (56.41%), Query Frame = 3 Query: 90 ITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNV 323 I+V YF N L++ + PC+ G RP Y+P+E+C ++ QRY+K L Q +++ + ++P +R S + + Sbjct: 473 ISVVQYFKKQYNYSLKHV-NWPCLQAGSDSRPKYLPMEVCSILEGQRYSKKLNEHQVTNILRMTCERPAQRESSIIEI 549
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGO1_ARATH (Protein argonaute OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 9.220e-20 Identity = 30/79 (37.97%), Postives = 45/79 (56.96%), Query Frame = 2 Query: 398 LKALKLSKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKF---GNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFS 625 L+ ++L+ Y + + FGI IST+ A VE R+LP P LK+ G P+ G+WN NKK++ + W +NFS Sbjct: 533 LQTVQLNDYAKDNYAQEFGIKISTSLASVEARILPPPWLKYHESGREGTCLPQVGQWNMMNKKMINGGTVNNWICINFS 611 HSP 2 Score: 55.4546 bits (132), Expect = 9.220e-20 Identity = 25/70 (35.71%), Postives = 44/70 (62.86%), Query Frame = 3 Query: 93 TVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQER 302 +V +YF ++++ LPC+ VG RP Y+P+E+C++V QRY+K L Q +L++ + Q+P +R Sbjct: 460 SVVEYFHETYGFRIQHT-QLPCLQVGNSNRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPIDR 528
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGO1_HUMAN (Protein argonaute-1 OS=Homo sapiens GN=EIF2C1 PE=1 SV=3) HSP 1 Score: 61.6178 bits (148), Expect = 1.565e-19 Identity = 29/82 (35.37%), Postives = 51/82 (62.20%), Query Frame = 3 Query: 78 QELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNV 323 Q +E TV YF N+ L+Y LPC+ VG+ ++ TY+PLE+C +V+ QR K LT+ Q +++++ + + +R +S + Sbjct: 300 QTVECTVAQYFKQKYNLQLKYP-HLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRL 380 HSP 2 Score: 55.0694 bits (131), Expect = 1.565e-19 Identity = 27/86 (31.40%), Postives = 47/86 (54.65%), Query Frame = 2 Query: 401 KALKLSKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKFG--NGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLV 652 + +K + Y+ +P ++ FGI + + +V GRVLPAP L++G N +P G W+ K+ +I+ WA+ F+ + R V Sbjct: 379 RLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEV 464
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGO13_ORYSJ (Protein argonaute 13 OS=Oryza sativa subsp. japonica GN=AGO13 PE=2 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 2.631e-19 Identity = 31/81 (38.27%), Postives = 49/81 (60.49%), Query Frame = 3 Query: 60 DDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQER 302 DD+G + TV YF + N L+Y+ PC+ G RP Y+P+E+C++V QRY+K L N Q +++ + Q+PQ+R Sbjct: 248 DDNGTRK----TVVQYFWDRYNYRLKYAS-WPCLQSGSDSRPVYLPMEVCKIVEGQRYSKKLNNKQVTNILRATCQRPQQR 323 HSP 2 Score: 53.9138 bits (128), Expect = 2.631e-19 Identity = 24/73 (32.88%), Postives = 40/73 (54.79%), Query Frame = 2 Query: 416 SKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKF---GNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFS 625 +KY ++ + FGI + + V RVLP P LK+ G + +P G+WN NKK++ ++ W ++FS Sbjct: 334 NKYTDDRFAQEFGIKVCNDLVSVPARVLPPPMLKYHDSGREKTCAPSVGQWNMINKKMINGGTVDNWTCLSFS 406
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGO14_ORYSJ (Protein argonaute 14 OS=Oryza sativa subsp. japonica GN=AGO14 PE=2 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 4.459e-19 Identity = 36/98 (36.73%), Postives = 57/98 (58.16%), Query Frame = 2 Query: 401 KALKLSKYDNEP---MLRSFGISISTNFAQVEGRVLPAPRLKF---GNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGE 676 K +++ +++N P ++ F I+IS A + RVLPAP L++ G + +PR G+WN NKK+V +++W VNFS R I ++ R CGE Sbjct: 540 KIIEMVQHNNYPADKVVSDFRINISNQMATMPARVLPAPTLRYHDSGKEKTCNPRVGQWNMINKKMVGGAVVQKWTCVNFS-RMHIDAVHR---LCGE 633 HSP 2 Score: 56.225 bits (134), Expect = 4.459e-19 Identity = 30/79 (37.97%), Postives = 42/79 (53.16%), Query Frame = 3 Query: 66 DGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQER 302 DG Q TV YF L+Y+ PC+ G P P Y+P+E+C +V QRY+K L + Q L+ + Q PQ+R Sbjct: 464 DGTTQ----TVIQYFSQRYKYRLQYTS-WPCLQSGNPSNPIYLPMEVCTIVEGQRYSKKLNDKQVTGLLRATCQPPQKR 537
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: MEL1_ORYSJ (Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1) HSP 1 Score: 60.077 bits (144), Expect = 1.274e-18 Identity = 30/81 (37.04%), Postives = 49/81 (60.49%), Query Frame = 3 Query: 60 DDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQER 302 DD+G + TV YF + N L+Y+ PC+ G RP Y+P+E+C++V QRY+K L + Q +++ + Q+PQ+R Sbjct: 472 DDNGTRK----TVVQYFWDRYNYRLKYAS-WPCLQSGSDSRPVYLPMEVCKIVEGQRYSKKLNDKQVTNILRATCQRPQQR 547 HSP 2 Score: 53.5286 bits (127), Expect = 1.274e-18 Identity = 24/73 (32.88%), Postives = 39/73 (53.42%), Query Frame = 2 Query: 416 SKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKF---GNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFS 625 +KY + + FGI + + V RVLP P LK+ G + +P G+WN NKK++ ++ W ++FS Sbjct: 558 NKYTEDRFAQEFGIKVCNDLVSVPARVLPPPMLKYHDSGREKTCAPSVGQWNMINKKMINGGTVDNWTCLSFS 630
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGO3_DANRE (Protein argonaute-3 OS=Danio rerio GN=eif2c3 PE=3 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 2.163e-18 Identity = 29/82 (35.37%), Postives = 51/82 (62.20%), Query Frame = 3 Query: 78 QELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNV 323 Q +E TV YF N+ L+Y LPC+ VG+ ++ TY+PLE+C +V+ QR K LT+ Q +++++ + + +R +S + Sbjct: 303 QTVERTVAQYFREKYNLQLKYP-HLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRL 383 HSP 2 Score: 52.373 bits (124), Expect = 2.163e-18 Identity = 25/86 (29.07%), Postives = 47/86 (54.65%), Query Frame = 2 Query: 401 KALKLSKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKFG--NGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLV 652 + ++ + Y+++P ++ F + A+V GRVLPAP L++G N +P +G W+ K+ +I+ WA+ F+ + R V Sbjct: 382 RLVRSANYNSDPFVQEFQFRVRDEMAEVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEV 467
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGO3_CHICK (Protein argonaute-3 OS=Gallus gallus GN=EIF2C3 PE=2 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 2.163e-18 Identity = 29/82 (35.37%), Postives = 51/82 (62.20%), Query Frame = 3 Query: 78 QELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNV 323 Q +E TV YF N+ L+Y LPC+ VG+ ++ TY+PLE+C +V+ QR K LT+ Q +++++ + + +R +S + Sbjct: 303 QTVERTVAQYFREKYNLQLKYP-HLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRL 383 HSP 2 Score: 52.373 bits (124), Expect = 2.163e-18 Identity = 25/83 (30.12%), Postives = 44/83 (53.01%), Query Frame = 2 Query: 401 KALKLSKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKFG--NGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIR 643 + ++ + YD +P ++ F + A V GRVLPAP L++G N +P +G W+ K+ +I+ WA+ F+ + R Sbjct: 382 RLVRSANYDADPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCR 464 The following BLAST results are available for this feature:
BLAST of FC931196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 40
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931196 ID=FC931196; Name=FC931196; organism=Citrus clementina; type=EST; length=716bpback to top |