FC931196

Overview
NameFC931196
Unique NameFC931196
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGO1C_ORYSJ (Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.938e-21
Identity = 41/89 (46.07%), Postives = 54/89 (60.67%), Query Frame = 2
Query:  398 LKALKLSKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKF---GNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVR 655
            +K +K + Y ++P  + FGI IS   A VE R+LPAPRLK+   G  +D  PR G+WN  NKK+V   K+  W  VNF AR    S+VR
Sbjct:  494 IKMVKHNAYQDDPYAKEFGIKISDRLASVEARILPAPRLKYNETGREKDCLPRVGQWNMMNKKMVNGGKVRSWMCVNF-ARNVQESVVR 581          

HSP 2 Score: 46.2098 bits (108), Expect = 3.938e-21
Identity = 27/81 (33.33%), Postives = 48/81 (59.26%), Query Frame = 3
Query:   60 DDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQER 302
            D+ G V+    +V  YF       ++++  LPC+ V   +R  Y+P+E+C++V  QRY+K L   Q  +L+E++ Q P++R
Sbjct:  417 DEGGTVK----SVVQYFQETYGFAIQHTY-LPCLTV---QRLNYLPMEVCKIVEGQRYSKRLNQNQIRALLEETCQHPRDR 489          
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGO11_ORYSJ (Protein argonaute 11 OS=Oryza sativa subsp. japonica GN=AGO11 PE=2 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 6.676e-21
Identity = 32/99 (32.32%), Postives = 56/99 (56.57%), Query Frame = 2
Query:  416 SKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKF---GNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSA---RCDIRSLVRDLIKCGENEGILI 694
            + Y N+   R FGI ++   A V+ RVLPAP LK+   G  +  +P  G+WN NNK+++    I  WA + F++     ++R+  ++L++   + G+ I
Sbjct:  400 NNYGNDYHAREFGIGVTNQLALVDARVLPAPMLKYHDSGQEKVCNPSIGQWNMNNKRMLNGGSINYWACLTFASCVRLAEVRTFCKELVRVCNSIGMQI 498          

HSP 2 Score: 58.5362 bits (140), Expect = 6.676e-21
Identity = 28/81 (34.57%), Postives = 45/81 (55.56%), Query Frame = 3
Query:   60 DDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQER 302
            D DG      ++V  YF    +  L+Y  + PC+  G   RPTY+P+E+C +V  QRY++ L   Q   ++  +R+ P+ER
Sbjct:  314 DQDGT----RVSVVQYFNRQYSYSLKYI-NWPCLQAGSDSRPTYLPMEVCRIVKGQRYSRKLNECQVTRMLRLARETPEER 389          
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGO12_ORYSJ (Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 7.090e-20
Identity = 34/103 (33.01%), Postives = 55/103 (53.40%), Query Frame = 2
Query:  398 LKALKLSKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKF---GNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARC---DIRSLVRDLIKCGENEGI 688
            ++ +  + Y N+   + FGI ++   A V+ RVLP PRLK+   G  +  +P  G+WN  NK++V    I  W  ++F++R    DIR    DL+    N G+
Sbjct:  547 IEIVNTNSYGNDDCAKEFGIKVANQLAVVDARVLPTPRLKYHDSGREKVCNPSVGQWNMINKRMVNGGCINHWTCLSFASRMHVNDIRMFCEDLVGMCNNIGM 649          

HSP 2 Score: 53.5286 bits (127), Expect = 7.090e-20
Identity = 24/78 (30.77%), Postives = 44/78 (56.41%), Query Frame = 3
Query:   90 ITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNV 323
            I+V  YF    N  L++  + PC+  G   RP Y+P+E+C ++  QRY+K L   Q  +++  + ++P +R S +  +
Sbjct:  473 ISVVQYFKKQYNYSLKHV-NWPCLQAGSDSRPKYLPMEVCSILEGQRYSKKLNEHQVTNILRMTCERPAQRESSIIEI 549          
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGO1_ARATH (Protein argonaute OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 9.220e-20
Identity = 30/79 (37.97%), Postives = 45/79 (56.96%), Query Frame = 2
Query:  398 LKALKLSKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKF---GNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFS 625
            L+ ++L+ Y  +   + FGI IST+ A VE R+LP P LK+   G      P+ G+WN  NKK++    +  W  +NFS
Sbjct:  533 LQTVQLNDYAKDNYAQEFGIKISTSLASVEARILPPPWLKYHESGREGTCLPQVGQWNMMNKKMINGGTVNNWICINFS 611          

HSP 2 Score: 55.4546 bits (132), Expect = 9.220e-20
Identity = 25/70 (35.71%), Postives = 44/70 (62.86%), Query Frame = 3
Query:   93 TVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQER 302
            +V +YF       ++++  LPC+ VG   RP Y+P+E+C++V  QRY+K L   Q  +L++ + Q+P +R
Sbjct:  460 SVVEYFHETYGFRIQHT-QLPCLQVGNSNRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPIDR 528          
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGO1_HUMAN (Protein argonaute-1 OS=Homo sapiens GN=EIF2C1 PE=1 SV=3)

HSP 1 Score: 61.6178 bits (148), Expect = 1.565e-19
Identity = 29/82 (35.37%), Postives = 51/82 (62.20%), Query Frame = 3
Query:   78 QELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNV 323
            Q +E TV  YF    N+ L+Y   LPC+ VG+ ++ TY+PLE+C +V+ QR  K LT+ Q +++++ + +   +R   +S +
Sbjct:  300 QTVECTVAQYFKQKYNLQLKYP-HLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRL 380          

HSP 2 Score: 55.0694 bits (131), Expect = 1.565e-19
Identity = 27/86 (31.40%), Postives = 47/86 (54.65%), Query Frame = 2
Query:  401 KALKLSKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKFG--NGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLV 652
            + +K + Y+ +P ++ FGI +  +  +V GRVLPAP L++G  N    +P  G W+   K+     +I+ WA+  F+ +   R  V
Sbjct:  379 RLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEV 464          
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGO13_ORYSJ (Protein argonaute 13 OS=Oryza sativa subsp. japonica GN=AGO13 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.631e-19
Identity = 31/81 (38.27%), Postives = 49/81 (60.49%), Query Frame = 3
Query:   60 DDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQER 302
            DD+G  +    TV  YF +  N  L+Y+   PC+  G   RP Y+P+E+C++V  QRY+K L N Q  +++  + Q+PQ+R
Sbjct:  248 DDNGTRK----TVVQYFWDRYNYRLKYAS-WPCLQSGSDSRPVYLPMEVCKIVEGQRYSKKLNNKQVTNILRATCQRPQQR 323          

HSP 2 Score: 53.9138 bits (128), Expect = 2.631e-19
Identity = 24/73 (32.88%), Postives = 40/73 (54.79%), Query Frame = 2
Query:  416 SKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKF---GNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFS 625
            +KY ++   + FGI +  +   V  RVLP P LK+   G  +  +P  G+WN  NKK++    ++ W  ++FS
Sbjct:  334 NKYTDDRFAQEFGIKVCNDLVSVPARVLPPPMLKYHDSGREKTCAPSVGQWNMINKKMINGGTVDNWTCLSFS 406          
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGO14_ORYSJ (Protein argonaute 14 OS=Oryza sativa subsp. japonica GN=AGO14 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 4.459e-19
Identity = 36/98 (36.73%), Postives = 57/98 (58.16%), Query Frame = 2
Query:  401 KALKLSKYDNEP---MLRSFGISISTNFAQVEGRVLPAPRLKF---GNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLVRDLIKCGE 676
            K +++ +++N P   ++  F I+IS   A +  RVLPAP L++   G  +  +PR G+WN  NKK+V    +++W  VNFS R  I ++ R    CGE
Sbjct:  540 KIIEMVQHNNYPADKVVSDFRINISNQMATMPARVLPAPTLRYHDSGKEKTCNPRVGQWNMINKKMVGGAVVQKWTCVNFS-RMHIDAVHR---LCGE 633          

HSP 2 Score: 56.225 bits (134), Expect = 4.459e-19
Identity = 30/79 (37.97%), Postives = 42/79 (53.16%), Query Frame = 3
Query:   66 DGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQER 302
            DG  Q    TV  YF       L+Y+   PC+  G P  P Y+P+E+C +V  QRY+K L + Q   L+  + Q PQ+R
Sbjct:  464 DGTTQ----TVIQYFSQRYKYRLQYTS-WPCLQSGNPSNPIYLPMEVCTIVEGQRYSKKLNDKQVTGLLRATCQPPQKR 537          
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: MEL1_ORYSJ (Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.274e-18
Identity = 30/81 (37.04%), Postives = 49/81 (60.49%), Query Frame = 3
Query:   60 DDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQER 302
            DD+G  +    TV  YF +  N  L+Y+   PC+  G   RP Y+P+E+C++V  QRY+K L + Q  +++  + Q+PQ+R
Sbjct:  472 DDNGTRK----TVVQYFWDRYNYRLKYAS-WPCLQSGSDSRPVYLPMEVCKIVEGQRYSKKLNDKQVTNILRATCQRPQQR 547          

HSP 2 Score: 53.5286 bits (127), Expect = 1.274e-18
Identity = 24/73 (32.88%), Postives = 39/73 (53.42%), Query Frame = 2
Query:  416 SKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKF---GNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFS 625
            +KY  +   + FGI +  +   V  RVLP P LK+   G  +  +P  G+WN  NKK++    ++ W  ++FS
Sbjct:  558 NKYTEDRFAQEFGIKVCNDLVSVPARVLPPPMLKYHDSGREKTCAPSVGQWNMINKKMINGGTVDNWTCLSFS 630          
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGO3_DANRE (Protein argonaute-3 OS=Danio rerio GN=eif2c3 PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 2.163e-18
Identity = 29/82 (35.37%), Postives = 51/82 (62.20%), Query Frame = 3
Query:   78 QELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNV 323
            Q +E TV  YF    N+ L+Y   LPC+ VG+ ++ TY+PLE+C +V+ QR  K LT+ Q +++++ + +   +R   +S +
Sbjct:  303 QTVERTVAQYFREKYNLQLKYP-HLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRL 383          

HSP 2 Score: 52.373 bits (124), Expect = 2.163e-18
Identity = 25/86 (29.07%), Postives = 47/86 (54.65%), Query Frame = 2
Query:  401 KALKLSKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKFG--NGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIRSLV 652
            + ++ + Y+++P ++ F   +    A+V GRVLPAP L++G  N    +P +G W+   K+     +I+ WA+  F+ +   R  V
Sbjct:  382 RLVRSANYNSDPFVQEFQFRVRDEMAEVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEV 467          
BLAST of FC931196 vs. ExPASy Swiss-Prot
Match: AGO3_CHICK (Protein argonaute-3 OS=Gallus gallus GN=EIF2C3 PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 2.163e-18
Identity = 29/82 (35.37%), Postives = 51/82 (62.20%), Query Frame = 3
Query:   78 QELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNV 323
            Q +E TV  YF    N+ L+Y   LPC+ VG+ ++ TY+PLE+C +V+ QR  K LT+ Q +++++ + +   +R   +S +
Sbjct:  303 QTVERTVAQYFREKYNLQLKYP-HLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRL 383          

HSP 2 Score: 52.373 bits (124), Expect = 2.163e-18
Identity = 25/83 (30.12%), Postives = 44/83 (53.01%), Query Frame = 2
Query:  401 KALKLSKYDNEPMLRSFGISISTNFAQVEGRVLPAPRLKFG--NGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDIR 643
            + ++ + YD +P ++ F   +    A V GRVLPAP L++G  N    +P +G W+   K+     +I+ WA+  F+ +   R
Sbjct:  382 RLVRSANYDADPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCR 464          
The following BLAST results are available for this feature:
BLAST of FC931196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
AGO1C_ORYSJ3.938e-2146.07Protein argonaute 1C OS=Oryza sativa subsp. japoni... [more]
AGO11_ORYSJ6.676e-2132.32Protein argonaute 11 OS=Oryza sativa subsp. japoni... [more]
AGO12_ORYSJ7.090e-2033.01Protein argonaute 12 OS=Oryza sativa subsp. japoni... [more]
AGO1_ARATH9.220e-2037.97Protein argonaute OS=Arabidopsis thaliana GN=AGO1 ... [more]
AGO1_HUMAN1.565e-1935.37Protein argonaute-1 OS=Homo sapiens GN=EIF2C1 PE=1... [more]
AGO13_ORYSJ2.631e-1938.27Protein argonaute 13 OS=Oryza sativa subsp. japoni... [more]
AGO14_ORYSJ4.459e-1936.73Protein argonaute 14 OS=Oryza sativa subsp. japoni... [more]
MEL1_ORYSJ1.274e-1837.04Protein argonaute MEL1 OS=Oryza sativa subsp. japo... [more]
AGO3_DANRE2.163e-1835.37Protein argonaute-3 OS=Danio rerio GN=eif2c3 PE=3 ... [more]
AGO3_CHICK2.163e-1835.37Protein argonaute-3 OS=Gallus gallus GN=EIF2C3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC34102E06EF PostHarvP1 Citrus clementina cDNA clone C34102E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931196 ID=FC931196; Name=FC931196; organism=Citrus clementina; type=EST; length=716bp
GACTGAGTGAGAAACTGTGTAAAGAGCAAATGTTTTCACTGAAGCAGAAG
AATGTTAAGGATGATGATGGTGAAGTGCAGGAACTGGAAATAACTGTTTA
TGACTATTTTGTTAATAATCGCAATATAGATTTGCGATATTCTGGAGATC
TACCATGCATCAATGTTGGTAAACCAAAGCGGCCGACCTATATTCCTCTT
GAGCTTTGTGAATTGGTGTCCTTACAACGTTACACGAAAGCCCTGACCAA
TCTACAGAGAGCATCACTAGTGGAGAAGTCAAGGCAGAAGCCACAAGAAA
GGATGAGTGTTTTGTCTAATGTTAAGTGTCTTTTCAAGCTATTGACTTTT
CAGTCGCAATGTTTCTTTGTCTGCTGAAGCTTACAGCATTTGTTTTCTTG
AAGGCTCTGAAACTTAGCAAGTATGATAATGAGCCAATGCTGCGTTCATT
TGGCATTTCTATCAGTACTAACTTTGCTCAAGTGGAAGGTCGTGTGCTAC
CAGCTCCTCGGTTAAAATTTGGCAACGGAGAAGATTTTTCCCCACGAAAT
GGGCGGTGGAATTTCAATAACAAGAAATTAGTGCAGCCAACTAAGATAGA
ACGTTGGGCCGTGGTAAACTTTTCTGCACGTTGTGACATTCGTAGCCTTG
TCCGAGATCTGATCAAATGTGGGGAAAATGAAGGAATTCTCATAGATCAG
CCATTTGATGTGTTTG
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