FC931198

Overview
NameFC931198
Unique NameFC931198
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15287 contig Ccv1_Contig15287:1..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931198 vs. ExPASy Swiss-Prot
Match: PTGR1_RABIT (Prostaglandin reductase 1 OS=Oryctolagus cuniculus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.999e-35
Identity = 84/197 (42.64%), Postives = 120/197 (60.91%), Query Frame = 2
Query:  107 LGPLGMPGLTAYSSLYEIGKPKKGETIFVSAASGAVGQLVGQLAKHEGLRVIGSVGSDEKLEYITKTLNFDGGFNYKTEKP-ADALARLAPEGIDIYYENVGGEHLDAALDAMNNFGRVVVCGLISQYNSDPY--PIKKINNVLVKRITMRGFIVTDKGFADVYSKEHQEKVQKWIKDGSFKVLIHETVGIDTLPRA 688
            LG +GMPG+TAY  L EI   K G+T+ V+AA+GAVG +VGQ+AK +G RV+G+ GS+EK++Y+ K + FD  FNYKT K   + L + AP+G D Y++NVGGE  +  +  M  FGRV +CG IS YNS     P     +VL + I M GFI  ++   +V  K  +E +  W+ +G  +       G + +P A
Sbjct:  119 LGTVGMPGITAYFGLLEICGAKSGDTVLVNAAAGAVGAVVGQIAKIKGCRVVGAAGSEEKVDYL-KKIGFDFAFNYKTVKSLEETLKKAAPDGYDCYFDNVGGEFSNTVIRQMKKFGRVAICGAISMYNSTGQLPPGPSPESVLYQEIRMEGFIF-NRWKGEVGQKALKE-LLTWVLEGKIQYREFVIEGFENMPAA 312          
BLAST of FC931198 vs. ExPASy Swiss-Prot
Match: PTGR1_HUMAN (Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.232e-34
Identity = 84/199 (42.21%), Postives = 121/199 (60.80%), Query Frame = 2
Query:  107 LGPLGMPGLTAYSSLYEIGKPKKGETIFVSAASGAVGQLVGQLAKHEGLRVIGSVGSDEKLEYITKTLNFDGGFNYKT-EKPADALARLAPEGIDIYYENVGGEHLDAALDAMNNFGRVVVCGLISQYNS----DPYPIKKINNVLVKRITMRGFIVTDKGFADVYSKEHQEKVQKWIKDGSFKVLIHETVGIDTLPRA 688
            LG +GMPGLTAY  L EI   K GET+ V+AA+GAVG +VGQ+AK +G +V+G+VGSDEK+ Y+ K L FD  FNYKT E   + L + +P+G D Y++NVGGE  +  +  M  FGR+ +CG IS YN      P P  +I  V+ + + M  F+V  +   D   K  ++ + KW+ +G  +   +   G + +P A
Sbjct:  119 LGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQK-LGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEI--VIYQELRMEAFVVY-RWQGDARQKALKD-LLKWVLEGKIQYKEYIIEGFENMPAA 312          
BLAST of FC931198 vs. ExPASy Swiss-Prot
Match: PTGR2_MOUSE (Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.731e-28
Identity = 76/220 (34.55%), Postives = 117/220 (53.18%), Query Frame = 2
Query:   59 IQKLDNPLGIEDIRVFLGPLGMPGLTAYSSLYEIGKPKKG--ETIFVSAASGAVGQLVGQLAKHEGL-RVIGSVGSDEKLEYITKTLNFDGGFNYKTEKPADALARLAPEGIDIYYENVGGEHLDAALDAMNNFGRVVVCGLISQYNSD-PYP---------IKKINNVLVKRITMRGFIVTDKGFADVYSKEHQEKVQKWIKDGSFKVLIHETVGIDTL 679
            ++K+D  L    +  FLG +GMPGLT+   + E G    G  +T+ VS A+GA G L GQ+    G  RV+G  G+ EK  ++T  L FD   NYKT   A+ L    P G+D+Y++NVGG+  +A +  MN    +++CG ISQY++D PYP         I+K  N+  +R T+  +   DK    +       ++ +W K+G  KV      G++ +
Sbjct:  114 LEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVGGDISNAVISQMNENSHIILCGQISQYSNDVPYPPPLPPAVEAIRKERNITRERFTVLNY--KDKFEPGIL------QLSQWFKEGKLKVKETMAKGLENM 325          
BLAST of FC931198 vs. ExPASy Swiss-Prot
Match: PTGR2_BOVIN (Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.319e-27
Identity = 74/209 (35.41%), Postives = 112/209 (53.59%), Query Frame = 2
Query:   59 IQKLDNPLGIEDIRVFLGPLGMPGLTAYSSLYEIGKPKKG--ETIFVSAASGAVGQLVGQLAKHEGL-RVIGSVGSDEKLEYITKTLNFDGGFNYKTEKPADALARLAPEGIDIYYENVGGEHLDAALDAMNNFGRVVVCGLISQYNSD-PYP---------IKKINNVLVKRITMRGFIVTDKGFADVYSKEHQEKVQKWIKDGSFKV 646
            ++K+D  L    +  FLG +GMPGLT+   + E G    G  +T+ VS A+GA G L GQ+ +  G  RV+G  G+ EK  ++T  L FD   NYK    A+ L +L P G+D+Y++NVGG+  D  +  MN    +++CG ISQYN D PYP         I+K  N+  +R  +  +   DK    +       ++ +W K+G  K+
Sbjct:  114 LEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHITAGSNQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGTPEKCLFLTSELGFDAAINYKEGNVAEQLHKLCPAGVDVYFDNVGGDISDTVISQMNQNSHIILCGQISQYNKDVPYPPPLPPAIEAIQKERNITRERFLVLNY--KDKFEFGIL------QLSQWFKEGKLKI 314          
BLAST of FC931198 vs. ExPASy Swiss-Prot
Match: PTGR2_RAT (Prostaglandin reductase 2 OS=Rattus norvegicus GN=Ptgr2 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.722e-27
Identity = 77/215 (35.81%), Postives = 115/215 (53.49%), Query Frame = 2
Query:   59 IQKLDNPLGIEDIRVFLGPLGMPGLTAYSSLYEIGKPKKG--ETIFVSAASGAVGQLVGQLAKHEGL-RVIGSVGSDEKLEYITKTLNFDGGFNYKTEKPADALARLAPEGIDIYYENVGGEHLDAALDAMNNFGRVVVCGLISQYNSD-PYP---------IKKINNVLVKRITMRGFIVTDKGFADVYSKEHQEKVQKWIKDGSFKVLIHETV 664
            ++K+D  L    +  FLG +GMPGLT+   + E G    G  +T+ VS A+GA G L GQ+    G  RV+G  G+ EK  ++T  L FD   NYKT   A+ L    P+G+D+Y++NVGG+  +A +  MN    +++CG ISQYN D PYP         I+K  N+  +R  +  +   D+    +       ++ +W K+G  K  I ETV
Sbjct:  114 LEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHVSAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTHEKCLFLTSELGFDAAVNYKTGNVAEQLREACPDGVDVYFDNVGGDISNAVISQMNQNSHIILCGQISQYNKDVPYPPPLPPAVEAIQKERNITRERFMVLNY--KDRFEPGIL------QLSQWFKEGKLK--IKETV 318          
BLAST of FC931198 vs. ExPASy Swiss-Prot
Match: PTGR2_HUMAN (Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.487e-26
Identity = 76/215 (35.35%), Postives = 111/215 (51.63%), Query Frame = 2
Query:   59 IQKLDNPLGIEDIRVFLGPLGMPGLTAYSSLYEIGKPKKG--ETIFVSAASGAVGQLVGQLAKHEGL-RVIGSVGSDEKLEYITKTLNFDGGFNYKTEKPADALARLAPEGIDIYYENVGGEHLDAALDAMNNFGRVVVCGLISQYNSD-PYP---------IKKINNVLVKRITMRGFIVTDKGFADVYSKEHQEKVQKWIKDGSFKVLIHETV 664
            ++K+D  L    +  FLG +GMPGLT+   + E G    G  +T+ VS A+GA G + GQ+    G  RV+G  G+ EK   +T  L FD   NYK +  A+ L    P G+D+Y++NVGG   D  +  MN    +++CG ISQYN D PYP         I+K  N+  +R  +  +   DK    +       ++ +W K+G  K  I ETV
Sbjct:  114 LEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGVDVYFDNVGGNISDTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNY--KDKFEPGIL------QLSQWFKEGKLK--IKETV 318          
BLAST of FC931198 vs. ExPASy Swiss-Prot
Match: PTGR2_PONAB (Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.248e-26
Identity = 76/215 (35.35%), Postives = 111/215 (51.63%), Query Frame = 2
Query:   59 IQKLDNPLGIEDIRVFLGPLGMPGLTAYSSLYEIGKPKKG--ETIFVSAASGAVGQLVGQLAKHEGL-RVIGSVGSDEKLEYITKTLNFDGGFNYKTEKPADALARLAPEGIDIYYENVGGEHLDAALDAMNNFGRVVVCGLISQYNSD-PYP---------IKKINNVLVKRITMRGFIVTDKGFADVYSKEHQEKVQKWIKDGSFKVLIHETV 664
            ++K+D  L    +  FLG +GMPGLT+   + E G    G  +T+ VS A+GA G + GQ+    G  RV+G  G+ EK   +T  L FD   NYK +  A+ L    P G+D+Y++NVGG   D  +  MN    +++CG ISQYN D PYP         I+K  N+  +R  +  +   DK    +       ++ +W K+G  K  I ETV
Sbjct:  114 LEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHLLGCSRVVGICGTHEKCVLLTSELGFDAAINYKKDNVAEQLRESCPAGVDVYFDNVGGNISDTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNY--RDKFEPGIL------QLSQWFKEGKLK--IKETV 318          
BLAST of FC931198 vs. ExPASy Swiss-Prot
Match: ZADH2_MOUSE (Zinc-binding alcohol dehydrogenase domain-containing protein 2 OS=Mus musculus GN=Zadh2 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 64/172 (37.21%), Postives = 97/172 (56.40%), Query Frame = 2
Query:  128 GLTAYSSLYEIGKPKKGETIFVSAASGAVGQLVGQLAKHEGLRVIGSVGSDEKLEYITKTLNFDGGFNYKTEKPADALARLAPEGIDIYYENVGGEHLDAALDAMNNFGRVVVCGLISQYNSDP--YPIKK---INNVLVKRITMRGFIVTDKGFADVYSKEHQEKVQKWIK 628
            G TAY SL E+G+  +G+ + V+AA+G  GQ   QL+K     VIG+  SDEK  ++ K++  D   NY+TE     L +  PEG+D+ YE+VGG   D A+DA+   GR++V G IS Y S     PIK       +L K  ++RGF      F + Y  ++Q  +++ ++
Sbjct:  157 GTTAYLSLEELGELSEGKKVLVTAAAGGTGQFAVQLSKIAKCHVIGTCSSDEKAAFL-KSIGCDRPINYRTEPVETVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQSPTGLSPIKAGVLPTKLLKKSASLRGF------FLNHYFSKYQAAMERLLE 321          
BLAST of FC931198 vs. ExPASy Swiss-Prot
Match: QOR_LEIAM (Probable quinone oxidoreductase OS=Leishmania amazonensis PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 69/191 (36.13%), Postives = 102/191 (53.40%), Query Frame = 2
Query:  116 LGMPGLTAYSSLYEIGKPKKGETIFVSAASGAVGQLVGQLAKHE-GLRVIGSVGSDEKLEYITKTLNFDGGFNYKTEKPADALARLAPEGIDIYYENVGGEHLDAALDAMNNFGRVVVCGLISQYN-------SDPYPIKKINNVLVKRITMRGFIVTDKGFADVYSKEHQEKVQKWIKDGSFKVLIHETV 664
            L +  LTA  +L E+G+ KKG+   V+AA+G  GQ+  QL KH  G  VIG+  S+EK E++ K++  D   NYKTE     L  L P+G+D+ YE VGG   + A+  +    RVV+ G IS Y        SDP        +LVK  ++ GF +    F DV  K +   + +++K G  K+ + + V
Sbjct:  126 LPVSALTAAVALGEVGRVKKGDVALVTAAAGGTGQIAVQLLKHVYGCTVIGTCSSEEKAEFL-KSIGCDHVINYKTESLDGRLHELCPKGVDVVYECVGGHTFNDAVRHVAVHARVVIIGSISSYKSGEVVPFSDPSGTSVTMLLLVKSASLNGFFLPQ--FHDVIPK-YMANLLQYLKAGQVKLFVDKKV 312          
BLAST of FC931198 vs. ExPASy Swiss-Prot
Match: ZADH2_HUMAN (Zinc-binding alcohol dehydrogenase domain-containing protein 2 OS=Homo sapiens GN=ZADH2 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21
Identity = 60/150 (40.00%), Postives = 86/150 (57.33%), Query Frame = 2
Query:  128 GLTAYSSLYEIGKPKKGETIFVSAASGAVGQLVGQLAKHEGLRVIGSVGSDEKLEYITKTLNFDGGFNYKTEKPADALARLAPEGIDIYYENVGGEHLDAALDAMNNFGRVVVCGLISQYNSDP--YPIKKIN---NVLVKRITMRGFIV 562
            G TAY SL E+G   +G+ + V+AA+G  GQ   QL+K     VIG+  SDEK  ++ K+L  D   NYKTE     L +  PEG+D+ YE+VGG   D A+DA+   GR++V G IS Y +     P+K       +L K  +++GF +
Sbjct:  157 GTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFL-KSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTLPAKLLKKSASVQGFFL 305          
The following BLAST results are available for this feature:
BLAST of FC931198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PTGR1_RABIT4.999e-3542.64Prostaglandin reductase 1 OS=Oryctolagus cuniculus... [more]
PTGR1_HUMAN4.232e-3442.21Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1... [more]
PTGR2_MOUSE7.731e-2834.55Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2... [more]
PTGR2_BOVIN1.319e-2735.41Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 P... [more]
PTGR2_RAT1.722e-2735.81Prostaglandin reductase 2 OS=Rattus norvegicus GN=... [more]
PTGR2_HUMAN2.487e-2635.35Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2... [more]
PTGR2_PONAB3.248e-2635.35Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2... [more]
ZADH2_MOUSE1.081e-2137.21Zinc-binding alcohol dehydrogenase domain-containi... [more]
QOR_LEIAM3.146e-2136.13Probable quinone oxidoreductase OS=Leishmania amaz... [more]
ZADH2_HUMAN9.153e-2140.00Zinc-binding alcohol dehydrogenase domain-containi... [more]

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Properties
Property NameValue
Genbank descriptionC34102E08EF PostHarvP1 Citrus clementina cDNA clone C34102E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931198 ID=FC931198; Name=FC931198; organism=Citrus clementina; type=EST; length=707bp
CATTGGTCAGGTTCCAATCCAGGAGTACATCGCCTTCGGCGAGCAGGAAC
TGGTCCGCATCCAAAAGCTTGACAACCCCCTCGGCATCGAGGACATTCGT
GTCTTCCTGGGTCCCCTGGGCATGCCCGGTTTGACCGCATACTCATCTTT
GTACGAGATTGGAAAGCCCAAGAAGGGTGAGACCATTTTCGTCTCCGCTG
CCAGTGGAGCCGTCGGCCAGCTGGTCGGCCAGCTCGCCAAGCACGAGGGT
CTGCGCGTCATTGGATCCGTCGGCTCGGACGAGAAGCTCGAGTACATCAC
CAAGACTCTCAACTTCGACGGCGGCTTCAACTACAAGACCGAGAAGCCCG
CCGATGCTCTTGCTCGCCTCGCTCCCGAGGGTATTGACATTTACTACGAG
AACGTCGGTGGAGAGCACCTCGATGCCGCCCTTGATGCCATGAACAACTT
CGGTCGTGTTGTTGTCTGCGGTCTGATCTCCCAGTACAACTCTGACCCTT
ACCCCATCAAGAAAATCAACAATGTCCTCGTCAAGCGTATTACTATGCGC
GGCTTCATCGTCACTGACAAGGGCTTTGCCGATGTTTACTCCAAGGAACA
CCAGGAGAAAGTGCAGAAGTGGATCAAGGATGGCTCGTTCAAGGTGCTCA
TCCACGAAACTGTTGGCATTGACACGCTGCCGAGGGCTTAGTTGGCATCT
TCTACGG
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