FC931207

Overview
NameFC931207
Unique NameFC931207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:1123..1826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.444e-58
Identity = 102/219 (46.58%), Postives = 158/219 (72.15%), Query Frame = 1
Query:   52 LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPP-ESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQW-KQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            LP++V  ++ + + +L ++TP+ + +DK+ W RD+EF+RQ +AG+NP +I  +T +P  S LDPEIYGP   SA+T + I  ++ G+ +V++A++  +LF++DYHD++LP+++++  L     Y +RTI FLT  GTL+PIAIEL+ P  +   Q  K+V  P   +T  W+W+LAKAHV ++DAG HQLV+HWLRTH C EP+++A +RQLS MHPI+
Sbjct:  394 LPKIVTTLQKSSEGLLRYDTPKIVSKDKYAWLRDDEFARQAIAGINPVNIERVTSYPPVSNLDPEIYGPGLHSALTEDHIIGQLDGL-TVQQALETNRLFMVDYHDIYLPFLDRINALDGRKAYATRTILFLTRLGTLKPIAIELSLPSQSSSNQKSKRVVTPPVDATSNWMWQLAKAHVGSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIF 611          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.303e-55
Identity = 106/219 (48.40%), Postives = 143/219 (65.30%), Query Frame = 1
Query:   52 LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQ--VFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            LP L +     G+N+L F  P      K  W  DEEF+R+ +AG+NP  IR + E+P KSTLDP +YG   S IT E +E  +GG ++VEEA+  ++LFILDY D F+PY+ ++  L +   Y +RTI FL   GTL+P+AIEL++P  +G     +  V LP+    +  +W LAKAHV+ +D+GYHQLVSHWL TH   EP+ IATNR LSV+HPIY
Sbjct:  334 LPALKEIFRTDGENVLQFPPPHVAKVSKSGWMTDEEFAREVIAGVNPNVIRRLQEFPPKSTLDPTLYGDQTSTITKEQLEINMGG-VTVEEALSTQRLFILDYQDAFIPYLTRINSLPTAKAYATRTILFLKDDGTLKPLAIELSKPHPDGDNLGPESIVVLPATEGVDSTIWLLAKAHVIVNDSGYHQLVSHWLNTHAVMEPFAIATNRHLSVLHPIY 551          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.769e-54
Identity = 104/219 (47.49%), Postives = 146/219 (66.67%), Query Frame = 1
Query:   52 LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQW--KQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            +P + +     G+  L +  P+ M  DK  W  DEEF+R+T+AGLNP  I++I E+PL S LD + YG     I  E +E  +GG+ +VE+AI+ KKLFILD+HD  +PY+ K+    +T  Y +RTIFFL   GTL P+AIEL++P   G+      +V++P+    E ++W LAKA+V+ +DA YHQ++SHWL TH   EP+VIATNRQLSV+HPIY
Sbjct:  323 IPVIKEIFRTDGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGLNPNVIKIIEEFPLSSKLDTQAYGDHTCIIAKEHLEPNLGGL-TVEQAIQNKKLFILDHHDYLIPYLRKINA-NTTKTYATRTIFFLKDDGTLTPLAIELSKPHPQGEEYGPVSEVYVPASEGVEAYIWLLAKAYVVVNDACYHQIISHWLSTHAIVEPFVIATNRQLSVVHPIY 539          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOXB_PHAVU (Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.464e-52
Identity = 99/219 (45.21%), Postives = 147/219 (67.12%), Query Frame = 1
Query:   52 LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQW--KQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            +P + +     G+  L +  P+ M  +K  W  DEEF+R+T+AG+NP  I+ + E+P +S LD + +G   S IT E +E  +GG+ +VE+AI+ KKLFILD+HD  +PY+ ++    +T  Y +RTIFFL   GTL P+AIEL++P   G       +V++P++   E ++W LAKA+V+ +D+ YHQLVSHWL TH   EP+V+ATNRQLSV+HP+Y
Sbjct:  217 IPIVKEIFRSDGEQFLKYPPPKVMQVNKSAWMTDEEFARETIAGVNPNVIKSLEEFPPRSKLDTQSFGDHTSIITKEHLEINLGGL-TVEQAIQSKKLFILDHHDYLIPYLRRINA-SATKTYATRTIFFLKSDGTLAPLAIELSKPHPQGDEHGPVSEVYVPAYEGVEAYIWLLAKAYVVVNDSCYHQLVSHWLNTHAVVEPFVLATNRQLSVVHPVY 433          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.299e-51
Identity = 101/217 (46.54%), Postives = 140/217 (64.52%), Query Frame = 1
Query:   52 LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            +P L + +   G+ +L F  P  +   K  W  DEEF R+ LAG+NP  I+ + E+P KS LD  +YG   S +T E +E  +GG+ +VEEA+   +LFILD+HD F+PY+E++  L +   Y +RTI FL    TL+P+AIEL+ P   GK    +V LP+    E  +W LAKA+V+ +D+ YHQL+SHWL TH   EP+VIATNR LSV+HPIY
Sbjct:  333 IPVLKEILRTDGEQVLKFPPPHVIRVTKSAWMTDEEFGREMLAGVNPCLIQRLQEFPPKSKLDVTVYGDQTSTMTKEHLEINLGGL-TVEEALHGNRLFILDHHDAFIPYLERINDLPTAKCYATRTILFLKDDNTLKPLAIELSLPNPGGKGANSRVILPADGGAESTIWLLAKAYVVVNDSCYHQLMSHWLNTHAVMEPFVIATNRHLSVLHPIY 548          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 6.446e-51
Identity = 106/237 (44.73%), Postives = 149/237 (62.87%), Query Frame = 1
Query:    4 GVNLPP-PKQEGFWNTLLPRLVKAIEDTGDNILL-FETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGK--PQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            G+ LP  P  E    +   +L+K +   G + LL F  P+ +  ++  W  DEEF+R+ LAGLNP  IR +TE+P KSTLDP  YG   S IT   IEK + G+ SV++A+   +L+ILD+HD F+P++  +  L     Y +RT+ FL    TL+P+AIEL+ P + G       +V  P+    E W+W+LAKA+V  +D+G+HQL+SHWL TH   EP+VIATNRQLSV HP+Y
Sbjct:  309 GLKLPSIPALEELRKSFPVQLIKDLLPVGGSYLLKFPKPDIIKENEVAWRTDEEFAREILAGLNPMVIRRLTEFPPKSTLDPSKYGDQTSTITPAHIEKNLEGL-SVQQALDSNRLYILDHHDHFMPFLIDINSLDGIFTYATRTLLFLRDDDTLKPLAIELSLPHIEGNLTSAKSKVHTPASSGIESWVWQLAKAYVAVNDSGWHQLISHWLNTHAVMEPFVIATNRQLSVTHPVY 544          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.099e-50
Identity = 96/208 (46.15%), Postives = 139/208 (66.83%), Query Frame = 1
Query:   85 GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQW--KQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            GD +L    P  +  DKF W  DEEF+R+ LAG+NP  I+ +T +P KSTLDP +YG   S IT   I+  + G+ +V+ A+K  +LFILD+HD F+P+++K+ +L    +Y SRTI  L   GTL+P+AIEL+ P  +G+      +V+ P+    E  +W+LAKA+   +D+ +HQL+SHWL TH   EP+VIATNRQLSV+HP++
Sbjct:  348 GDQVLKLPLPHVIKEDKFAWRTDEEFAREMLAGVNPVMIKRLTNFPAKSTLDPNVYGDHTSKITEAHIKHNMEGL-TVQNALKGNRLFILDHHDHFMPFLDKINKLDGNFIYASRTILLLKDDGTLKPLAIELSLPHPDGQQHGAVSKVYTPANTGVESQIWQLAKAYASVNDSAWHQLISHWLNTHAVIEPFVIATNRQLSVVHPVH 554          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 2.449e-50
Identity = 100/219 (45.66%), Postives = 140/219 (63.93%), Query Frame = 1
Query:   52 LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNG--KPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            LP + +     G +IL F  P  +   +  W  DEEF+R+ +AG+NP  IR + E+P KS LDP IYG   S IT + ++ +     +++EA+  ++LF+LDYHD+F+PYV ++ QL S   Y +RTI FL   GTL+P+AIEL+ P   G       QV LP+    E  +W LAKA+V+ +D+ YHQL+SHWL TH   EP+VIAT+R LSV+HPIY
Sbjct:  310 LPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGDQSSKITADSLDLD---GYTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIY 525          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.199e-50
Identity = 103/219 (47.03%), Postives = 141/219 (64.38%), Query Frame = 1
Query:   52 LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQ--WKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            LP L +     G+  L F  P+ +   K  W  DEEF+R+ LAG+NP  IR + E+P +S LD ++YG   S IT E +E  + G+ +V+EAI+ K+LF+L +HD  +PY+ ++    ST  Y +RTI FL   GTLRP+AIEL+ P   G     + QVFLP+    E  +W LAKA+V+ +D+ YHQLVSHWL TH   EP++IATNR LSV+HPIY
Sbjct:  328 LPVLKEIFRTDGEQALKFPPPKVIQVSKSAWMTDEEFAREMLAGVNPNLIRCLKEFPPRSKLDSQVYGDHTSQITKEHLEPNLEGL-TVDEAIQNKRLFLLGHHDPIMPYLRRINAT-STKAYATRTILFLKNDGTLRPLAIELSLPHPQGDQSGAFSQVFLPADEGVESSIWLLAKAYVVVNDSCYHQLVSHWLNTHAVVEPFIIATNRHLSVVHPIY 544          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.588e-49
Identity = 104/237 (43.88%), Postives = 149/237 (62.87%), Query Frame = 1
Query:    4 GVNLPP-PKQEGFWNTLLPRLVK-AIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQ--VFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            G+ LP  P  E        +LVK  +   GD IL    P+ + +DK  W  DEEF+R+ LAG+NP  I  +TE+P KS+LDP  +G   S IT   I   + G+ +V++A+   +L+ILD+HD F+P++  V  L+   +Y +RT+FFL   GTL P+AIEL+ P + G     +  V+ P+    E W+W+LAKA+V  +D+G+HQL+SHWL TH   EP+VIATNRQLSV HP++
Sbjct:  312 GLKLPDVPALEELRKRFPLQLVKDLLPAAGDYILKLPMPQIIKQDKEAWRTDEEFAREVLAGVNPMMITRLTEFPPKSSLDPSKFGDHTSMITAAHIGSNLEGL-TVQQALDSNRLYILDHHDRFMPFLIDVNGLEGNFIYATRTLFFLRGDGTLAPLAIELSEPMIQGDVTAAKSTVYTPASTGVEAWVWQLAKAYVAVNDSGWHQLISHWLNTHAVMEPFVIATNRQLSVTHPVH 547          
The following BLAST results are available for this feature:
BLAST of FC931207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
LOX4_ARATH5.444e-5846.58Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOXX_SOYBN3.303e-5548.40Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOX4_SOYBN4.769e-5447.49Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]
LOXB_PHAVU4.464e-5245.21Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2... [more]
LOXA_PHAVU1.299e-5146.54Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]
LOX1_ORYSJ6.446e-5144.73Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]
LOX4_ORYSJ1.099e-5046.15Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]
LOX1_SOYBN2.449e-5045.66Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]
LOX3_SOYBN3.199e-5047.03Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX3_ORYSJ1.588e-4943.88Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionC34102F06EF PostHarvP1 Citrus clementina cDNA clone C34102F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931207 ID=FC931207; Name=FC931207; organism=Citrus clementina; type=EST; length=704bp
GAAGGAGTCAACTTGCCTCCACCCAAACAGGAAGGTTTTTGGAACACACT
GCTTCCCAGATTGGTTAAGGCAATTGAGGATACAGGAGATAATATTTTGC
TGTTTGAGACGCCAGAAACAATGGACAGAGACAAATTCTTTTGGTTTAGG
GATGAGGAATTTTCTAGGCAAACTCTCGCTGGTCTCAACCCGTATAGCAT
AAGGTTGATCACGGAATGGCCGTTGAAAAGCACACTCGATCCTGAAATTT
ACGGACCACCAGAATCAGCAATTACCACAGAATTGATTGAAAAAGAAATT
GGAGGAATGATTTCTGTTGAAGAGGCTATAAAACAAAAGAAGTTGTTCAT
CTTAGATTACCATGACCTATTTTTACCATATGTGGAAAAAGTGAGACAAC
TCAAAAGCACAACGTTGTATGGATCTCGCACAATTTTCTTCCTAACACCA
GCCGGCACATTGAGACCAATAGCTATTGAGCTCACTCGGCCTCCAATGAA
TGGCAAGCCACAATGGAAACAAGTGTTTTTACCTTCTTGGCACTCTACTG
AGTGCTGGCTTTGGAAGCTAGCCAAAGCTCATGTCCTTGCTCATGATGCT
GGCTATCACCAGCTTGTCAGCCATTGGTTAAGAACTCATTGTTGCACAGA
ACCTTACGTAATAGCAACCAATCGGCAACTCAGCGTGATGCATCCAATCT
ATAG
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