FC931207

Overview
NameFC931207
Unique NameFC931207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.074e-49
Identity = 101/219 (46.12%), Postives = 143/219 (65.30%), Query Frame = 1
Query:   52 LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKP--QWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            L  + + +   G+ IL F TP  +   K  W  DEEF+R+ LAG+NP  I  + E+P KS LDPE+YG   S IT E IE ++ G+ +++EAI   KLFIL++HD+ +PY+ ++    + T Y SRT+ FL   G+L+P+AIEL+ P  +G       +V+ PS    E  +W+LAKA+V  +D+G HQL+SHWL TH   EP+VIATNRQLSV+HPI+
Sbjct:  331 LEMIRELLRTDGEGILRFPTPLVIKDSKTAWRTDEEFAREMLAGVNPVIISRLEEFPPKSKLDPELYGNQNSTITAEHIEGKLDGL-TIDEAINSNKLFILNHHDVLIPYLRRINTTTTKT-YASRTLLFLQDNGSLKPLAIELSLPHPDGDQFGVTSKVYTPSDQGVEGSIWQLAKAYVAVNDSGVHQLISHWLNTHAVIEPFVIATNRQLSVLHPIH 547          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.880e-49
Identity = 102/237 (43.04%), Postives = 146/237 (61.60%), Query Frame = 1
Query:    4 GVNLPP-PKQEGFWNTLLPRLVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKP--QWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            G+ LP  P  +   + +   ++K I  T G  +L + TP+ +  DK  W  DEEF R+ LAG NP  I  + E+P KS LDP IYG   S ITTE ++ ++ G+ +V EAIK  +LFIL++HD+ +P + K+    +T  Y SRT+ FL    TL+P+AIEL+ P  +G       +V+ P+    E  +W+ AKA+V  +D G HQL+SHWL TH   EP+V+ATNR LSV+HPI+
Sbjct:  312 GIKLPEGPWLKAITDNISSEILKDILQTDGQGLLKYPTPQVIQGDKTAWRTDEEFGREMLAGSNPVLISRLQEFPPKSKLDPTIYGNQNSTITTEHVQDKLNGL-TVNEAIKSNRLFILNHHDIVMPLLRKINMSANTKAYASRTLLFLQDDRTLKPLAIELSLPHPDGDQFGTVSKVYTPADQGVEGSIWQFAKAYVAVNDMGIHQLISHWLNTHAVIEPFVVATNRHLSVLHPIH 547          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.344e-48
Identity = 101/219 (46.12%), Postives = 140/219 (63.93%), Query Frame = 1
Query:   52 LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKP--QWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            L  + + +   G+ IL F TP  +   K  W  DEEF+R+ LAG+NP  I  + E+P KS LDPE YG   S IT E IE ++ G+ +V+EA+   KLFIL++HD+ +PY+ ++     T  Y SRT+ FL   G+L+P+AIEL+ P  +G       +V+ PS    E  +W+LAKA+V  +D G HQL+SHWL TH   EP+VIATNRQLSV+HPI+
Sbjct:  332 LEMIRELLRTDGEGILRFPTPLVIKDSKTAWRTDEEFAREMLAGVNPVIISRLQEFPPKSKLDPEAYGNQNSTITAEHIEDKLDGL-TVDEAMNNNKLFILNHHDVIIPYLRRINTT-ITKAYASRTLLFLQDNGSLKPLAIELSFPHPDGDQFGVTSKVYTPSDQGVESSIWQLAKAYVAVNDVGVHQLISHWLNTHAVIEPFVIATNRQLSVLHPIH 548          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.994e-48
Identity = 97/219 (44.29%), Postives = 138/219 (63.01%), Query Frame = 1
Query:   52 LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQW--KQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            LP + +     G+ +L F  P  +   K  W  DEEF+R+ +AG+NP  IR + E+P KS LDP IYG   S IT + ++ +     +V+EA+  ++LF+LDYHD+F+PY+ ++ Q  +   Y +RTI FL   GTL+P+AIEL+ P   G       QV LP+    E  +W LAKA+V+ +D+ YHQL+SHWL TH   EP++IATNR LS +HPIY
Sbjct:  339 LPVVKELFRTDGEQVLKFPPPHVIQVSKSAWMTDEEFAREMVAGVNPCVIRGLQEFPPKSNLDPTIYGEQTSKITADALDLD---GYTVDEALASRRLFMLDYHDVFMPYIRRINQTYAKA-YATRTILFLRENGTLKPVAIELSLPHPAGDLSGAVSQVILPAKEGVESTIWLLAKAYVVVNDSCYHQLMSHWLNTHAVIEPFIIATNRHLSALHPIY 553          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 2.994e-48
Identity = 96/209 (45.93%), Postives = 138/209 (66.03%), Query Frame = 1
Query:   85 GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNG--KPQWKQVFLP-SWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            GD++L    P  +  +K  W  DEEF+R+ LAG+NP  I  +TE+P KS+LDP  +G   S IT E IEK + G+ +V++A++  +L+ILD+HD F+P++  V  L    +Y +RT+FFL   G L P+AIEL+ P + G       +V+ P    S E W+W+LAKA+V  +D+G+HQLVSHWL TH   EP+VI+TNR LSV HP++
Sbjct:  336 GDSLLKLPVPHIIQENKQAWRTDEEFAREVLAGVNPVMITRLTEFPPKSSLDPSKFGDHTSTITAEHIEKNLEGL-TVQQALESNRLYILDHHDRFMPFLIDVNNLPGNFIYATRTLFFLRGDGRLTPLAIELSEPIIQGGLTTAKSKVYTPVPSGSVEGWVWELAKAYVAVNDSGWHQLVSHWLNTHAVMEPFVISTNRHLSVTHPVH 543          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.486e-47
Identity = 106/238 (44.54%), Postives = 146/238 (61.34%), Query Frame = 1
Query:    1 EGVNLPPPK--QEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKP--QWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            EG++LP          N  L  L +     G   L F  P+ +  DK  W  DEEF+R+ LAGLNP  I+L+ E+P KS LD E YG   S IT   IE  + G+ +VEEA+++++LFILD+HD  +PY+ +V    + T Y SRT+ FL   GTL+P+ IEL+ P  NG       +V+ P     +  LW+LAKA V  +D+G HQL+SHW++TH   EP+VIATNRQLSV+HP++
Sbjct:  311 EGIDLPNQALIDSIVKNIPLEMLKEIFRTDGQKFLKFPVPQVIKEDKTAWRTDEEFAREMLAGLNPVVIQLLKEFPPKSKLDSESYGNQNSTITKSHIEHNLDGL-TVEEALEKERLFILDHHDTLMPYLGRVNTTTTKT-YASRTLLFLKDDGTLKPLVIELSLPHPNGDKFGAVSEVYTPGEGVYDS-LWQLAKAFVGVNDSGNHQLISHWMQTHASIEPFVIATNRQLSVLHPVF 545          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 4.324e-47
Identity = 93/212 (43.87%), Postives = 138/212 (65.09%), Query Frame = 1
Query:   73 IEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWK--QVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            + + G+  L +  P+ +   +  W  DEEF+R+ LAGLNP  I  + E+P KS LD   YG   S+I TE IE  + G+ +V+EA++Q KL+ILD+HD  +PY+ ++    + T Y +RT+  L   GTL+P+AIEL+ P   G+      +VF P+    E  +W+LAKA+   +D+GYHQL+SHWL+TH   EP++IA+NRQLSV+HPI+
Sbjct:  359 VRNDGERFLKYPLPDILKESRSAWRTDEEFAREMLAGLNPVVISRLQEFPPKSCLDSAKYGNQHSSIRTEHIESNMNGL-NVQEALEQNKLYILDHHDALMPYLTRINSTNTKT-YATRTLLLLQADGTLKPLAIELSLPHAQGESYGSVSKVFTPAEKGVEGSVWQLAKAYAAVNDSGYHQLISHWLQTHAVIEPFIIASNRQLSVVHPIH 568          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.375e-47
Identity = 94/219 (42.92%), Postives = 137/219 (62.56%), Query Frame = 1
Query:   52 LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKP--QWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            +P   +     G+  L F  P+ +  D   W  DEEF+R+ +AG+NP+ I+ +  +P+KS LD ++YG   S IT E +E  +GG ++VE AI+  +LF  D+HD   PY+ K+    +T  Y +RT+ FL   GTL+P+AIEL+ P  +G       +V+LP+    E  +W LAKA V+ +D+ YHQLVSHWL TH   EP++IATNR LSV+HPI+
Sbjct:  336 IPLFSELFRSDGEAALKFPPPKVIQVDHSAWMTDEEFAREMIAGVNPHIIKEVLSFPIKSKLDSQLYGDNTSKITKEHLEPNLGG-VTVEGAIQTNRLFTPDHHDALFPYLRKINAT-ATKAYATRTVLFLQDNGTLKPLAIELSTPHPDGDSFGPVSKVYLPASEGVEASIWLLAKAFVVVNDSCYHQLVSHWLNTHAVVEPFIIATNRHLSVVHPIH 552          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.632e-47
Identity = 98/219 (44.75%), Postives = 136/219 (62.10%), Query Frame = 1
Query:   52 LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQW--KQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            LP L +     G+N L +  P+ +   +  W  DEEF+R+ LAG+NP  I  + E+P +S LD +IYG   S I+ E +E  + G+ +VEEAI+ KKLF+LD+HD  +PY+ ++    ST  Y +RTI FL     L+P+AIEL+ P   G        V+ P+    E  +W LAKA+V+ +D+ YHQLVSHWL TH   EP+VIATNR LS +HPIY
Sbjct:  332 LPVLKEIFRTDGENTLKYPPPKVIQVSRSGWMTDEEFAREMLAGVNPNVICCLQEFPPRSKLDSQIYGDHTSKISKEHLEPNLEGL-TVEEAIQNKKLFLLDHHDSIMPYLRRINST-STKAYATRTILFLNNNQNLKPLAIELSLPHPQGDEHGAVSYVYQPALEGVESSIWLLAKAYVIVNDSCYHQLVSHWLNTHAVVEPFVIATNRHLSCLHPIY 548          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.803e-46
Identity = 96/218 (44.04%), Postives = 137/218 (62.84%), Query Frame = 1
Query:   52 LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQW--KQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPI 699
            LP + +     G+ +L F  P  +   K  W  DEEF+R+ LAG+NP  IR + E+P KS LDP  YG   S I+ +++  +     +++EA+   +LFILDYHD F+P++ ++ +  S   Y +RTI FL   GTL+P+AIEL+ P  +G       +V LP+    E  +W LAKA+V+ +D+ YHQL+SHWL TH   EP+VIATNRQLSV+HPI
Sbjct:  336 LPVVKEIFRTDGEQVLKFTPPHVIRVSKSAWMTDEEFAREMLAGVNPCMIRGLQEFPPKSNLDPAEYGDHTSKISVDVLNLD---GCTIDEALASGRLFILDYHDTFIPFLRRINET-SAKAYATRTILFLKENGTLKPVAIELSLPHPDGDKSGFVSKVILPADEGVESTIWLLAKAYVVVNDSCYHQLMSHWLNTHAVIEPFVIATNRQLSVVHPI 549          
The following BLAST results are available for this feature:
BLAST of FC931207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
LOXA_SOLLC2.074e-4946.12Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOXB_SOLLC7.880e-4943.04Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]
LOX1_SOLTU1.344e-4846.12Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOX2_SOYBN2.994e-4844.29Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]
LOX1_HORVU2.994e-4845.93Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]
LOX1_ARATH1.486e-4744.54Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOX5_ARATH4.324e-4743.87Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOX1_LENCU7.375e-4742.92Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]
LOX3_PEA9.632e-4744.75Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX2_PEA2.803e-4644.04Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC34102F06EF PostHarvP1 Citrus clementina cDNA clone C34102F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931207 ID=FC931207; Name=FC931207; organism=Citrus clementina; type=EST; length=704bp
GAAGGAGTCAACTTGCCTCCACCCAAACAGGAAGGTTTTTGGAACACACT
GCTTCCCAGATTGGTTAAGGCAATTGAGGATACAGGAGATAATATTTTGC
TGTTTGAGACGCCAGAAACAATGGACAGAGACAAATTCTTTTGGTTTAGG
GATGAGGAATTTTCTAGGCAAACTCTCGCTGGTCTCAACCCGTATAGCAT
AAGGTTGATCACGGAATGGCCGTTGAAAAGCACACTCGATCCTGAAATTT
ACGGACCACCAGAATCAGCAATTACCACAGAATTGATTGAAAAAGAAATT
GGAGGAATGATTTCTGTTGAAGAGGCTATAAAACAAAAGAAGTTGTTCAT
CTTAGATTACCATGACCTATTTTTACCATATGTGGAAAAAGTGAGACAAC
TCAAAAGCACAACGTTGTATGGATCTCGCACAATTTTCTTCCTAACACCA
GCCGGCACATTGAGACCAATAGCTATTGAGCTCACTCGGCCTCCAATGAA
TGGCAAGCCACAATGGAAACAAGTGTTTTTACCTTCTTGGCACTCTACTG
AGTGCTGGCTTTGGAAGCTAGCCAAAGCTCATGTCCTTGCTCATGATGCT
GGCTATCACCAGCTTGTCAGCCATTGGTTAAGAACTCATTGTTGCACAGA
ACCTTACGTAATAGCAACCAATCGGCAACTCAGCGTGATGCATCCAATCT
ATAG
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