FC931207

Overview
NameFC931207
Unique NameFC931207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX2_ORYSJ (Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.700e-43
Identity = 99/244 (40.57%), Postives = 142/244 (58.20%), Query Frame = 1
Query:    4 GVNLPP-PKQEGFWNTLLPRLVK-AIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGK---PQWKQVFLPSWH------STECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            G+ LP  P  E        +LVK  I   GD +L    P  +  DK  W  D+EF+R+ LAG+NP  I  +TE+P +S LDP  YG   S IT   +E+ + G+ +V++AI    L+++D+HD F+PY+  +  L    +Y +RT+ FL   GTL P+AIEL+ P +           V+ P+        + E W+W+LAKA+V  +D  +HQL+SHWL TH   EP+VIATNRQLSV HP++
Sbjct:  309 GLKLPSIPALEELRKRFPLQLVKDLIPAGGDYLLKLPMPHVIREDKKAWMTDDEFAREILAGVNPMVIARLTEFPPRSRLDPARYGDQTSTITAAHVERGLEGL-TVQQAIDGNLLYVVDHHDHFMPYLLDINSLDDNFIYATRTLLFLRGDGTLAPLAIELSLPHLQDDGLITARSTVYTPAARGGTGAGAVEWWVWQLAKAYVNVNDYCWHQLISHWLNTHAVMEPFVIATNRQLSVAHPVH 551          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX5_MOUSE (Arachidonate 5-lipoxygenase OS=Mus musculus GN=Alox5 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 59/193 (30.57%), Postives = 90/193 (46.63%), Query Frame = 1
Query:  124 DRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            +R K  W  D  F  Q L G NP  I+  T  P            P+  +TTE++E  +   +S+E+ +++  +FI+DY  L      K        L     + +   A  + PIAI+L + P    P    +FLP+    +   W LAK  V + D   HQ ++H LRTH  +E + IA  RQL  +HP++
Sbjct:  221 ERVKNHWQEDLMFGYQFLNGCNPVLIKRCTALP------------PKLPVTTEMVECSLERQLSLEQEVQEGNIFIVDYELLDGIDANKTDPCTHQFLAAPICLLYKNLANKIVPIAIQLNQTPGESNP----IFLPTDSKYD---WLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPLF 394          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX5_RAT (Arachidonate 5-lipoxygenase OS=Rattus norvegicus GN=Alox5 PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.947e-16
Identity = 60/193 (31.09%), Postives = 90/193 (46.63%), Query Frame = 1
Query:  124 DRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            +R K  W  D  F  Q L G NP  I+  TE P K              +TTE++E  +   +S+E+ +++  +FI+DY  L      K        L     + +   A  + PIAI+L + P    P    +FLP+    +   W LAK  V + D   HQ ++H LRTH  +E + IA  RQL  +HP++
Sbjct:  220 ERVKNHWQEDLMFGYQFLNGCNPVLIKRCTELPKKLP------------VTTEMVECSLERQLSLEQEVQEGNIFIVDYELLDGIDANKTDPCTHQFLAAPICLLYKNLANKIVPIAIQLNQTPGEKNP----IFLPTDSKYD---WLLAKIWVRSSDFHIHQTITHLLRTHLVSEVFGIAMYRQLPAVHPLF 393          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX5_HUMAN (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.733e-16
Identity = 61/187 (32.62%), Postives = 88/187 (47.06%), Query Frame = 1
Query:  142 WFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            W  D  F  Q L G NP  IR  TE P K              +TTE++E  +   +S+E+ ++Q  +FI+D+  L      K        L     + +   A  + PIAI+L + P +  P    +FLPS    +   W LAK  V + D   HQ ++H LRTH  +E + IA  RQL  +HPI+
Sbjct:  227 WQEDLMFGYQFLNGCNPVLIRRCTELPEKLP------------VTTEMVECSLERQLSLEQEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENP----IFLPSDAKYD---WLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIF 394          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOX5_MESAU (Arachidonate 5-lipoxygenase OS=Mesocricetus auratus GN=ALOX5 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 60/193 (31.09%), Postives = 88/193 (45.60%), Query Frame = 1
Query:  124 DRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            +R K  W  D  F  Q L G NP  I+   E P K              +TTE++E  +   +S+E+ +++  +FI+DY  L      K        L     + +   A  + PIAI+L + P    P    +FLPS    +   W LAK  V + D   HQ ++H L TH  +E + IA  RQL  +HPI+
Sbjct:  220 ERVKNHWQEDLMFGYQFLNGCNPVLIKRCRELPQKLP------------VTTEMVECSLERHLSLEQEVQEGNIFIVDYELLDGIDANKTDPCTHQFLAAPICLLYKNLANKIVPIAIQLNQAPGEKNP----IFLPSDAKYD---WLLAKIWVRSSDFHVHQTITHLLCTHLVSEVFGIAMYRQLPAVHPIF 393          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LX15B_HUMAN (Arachidonate 15-lipoxygenase B OS=Homo sapiens GN=ALOX15B PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.027e-12
Identity = 53/188 (28.19%), Postives = 86/188 (45.74%), Query Frame = 1
Query:  142 WFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPA-GTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            W  D  F+ Q L GLNP  IR               Y P    +T  ++   +G   S++  +++  LF++D H +       V   K        T+ + +P  G L P+AI+L++ P    P    +FLP+    + W W LAK  V   +  +H+ ++H L +H   E + +AT RQL   HP++
Sbjct:  232 WQEDAFFASQFLNGLNPVLIRRCH------------YLPKNFPVTDAMVASVLGPGTSLQAELEKGSLFLVD-HGILSGIQTNVINGKPQFSAAPMTLLYQSPGCGPLLPLAIQLSQTPGPNSP----IFLPT---DDKWDWLLAKTWVRNAEFSFHEALTHLLHSHLLPEVFTLATLRQLPHCHPLF 399          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LX15B_RAT (Arachidonate 15-lipoxygenase B OS=Rattus norvegicus GN=Alox15b PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 55/188 (29.26%), Postives = 84/188 (44.68%), Query Frame = 1
Query:  142 WFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTP-AGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            W  D  F+ Q L GLNP  IR     P                +T E++   +G   S++  +++  LF++D H +       V   K        T+ + +P +G L PIAI+L + P    P    +FLPS    + W W LAK  V   +   H+ ++H L  H   E + +AT RQL   HP++
Sbjct:  233 WQEDAFFASQFLNGLNPVLIRRCRRLP------------ENFPVTDEMVAPVLGPGTSLQAELEKGSLFLVD-HGILSGVQTNVINGKPQFSAAPMTLLYQSPGSGPLLPIAIQLKQTPGPDNP----IFLPS---DDKWDWLLAKTWVRNAEFSIHEALTHLLHAHLIPEVFALATLRQLPHCHPLF 400          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOXE3_MOUSE (Epidermis-type lipoxygenase 3 OS=Mus musculus GN=Aloxe3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 53/188 (28.19%), Postives = 87/188 (46.28%), Query Frame = 1
Query:  142 WFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWL-WKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            W  D  F  Q L G+NP  +  ++  P K              +T +++   +G    ++  +++  +F+ DY  L    V  +  L+         + +L P G L P+AI+L++ P    P    +FLP    T+C L W LAK  V   +   H+  +H+L TH   E + +AT RQL + HP+Y
Sbjct:  268 WCEDSFFGYQYLNGVNPVMLHCLSSLPSKLP------------VTNDMVAPLLGPGTCLQTELERGHIFLADYWILAEAPVHCINSLQQYVT-APLCLLWLNPQGVLLPLAIQLSQTPGPESP----IFLP----TDCELDWLLAKTWVRNSEFLVHENNTHFLCTHLLCEAFSMATLRQLPLCHPVY 434          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LOXE3_HUMAN (Epidermis-type lipoxygenase 3 OS=Homo sapiens GN=ALOXE3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 51/187 (27.27%), Postives = 85/187 (45.45%), Query Frame = 1
Query:  142 WFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            W  D  F  Q L G+NP  +  I+  P K              +T +++   +G    ++  +++  +F+ DY  L       +   +   +     + +L+P G L P+AI+L++ P    P    +FLP+      W W LAK  V   +   H+  +H+L TH   E + +AT RQL + HPIY
Sbjct:  268 WCEDHFFGYQYLNGVNPVMLHCISSLPSKLP------------VTNDMVAPLLGQDTCLQTELERGNIFLADYWILAEAPTHCLNG-RQQYVAAPLCLLWLSPQGALVPLAIQLSQTPGPDSP----IFLPTDSE---WDWLLAKTWVRNSEFLVHENNTHFLCTHLLCEAFAMATLRQLPLCHPIY 434          
BLAST of FC931207 vs. ExPASy Swiss-Prot
Match: LX15B_MOUSE (Arachidonate 15-lipoxygenase B OS=Mus musculus GN=Alox15b PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 51/187 (27.27%), Postives = 82/187 (43.85%), Query Frame = 1
Query:  142 WFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIY 702
            W  D  F+ Q L G+NP  IR     P                +T E++   +G   S++  +++  LF++D+  L   +   +      +      +   + +G L PIAI+L + P    P    +FLPS    + W W LAK  V   +   H+ V+H L  H   E + +AT RQL   HP++
Sbjct:  233 WQEDAFFASQFLNGINPVLIRRCHSLP------------NNFPVTDEMVAPVLGPGTSLQAELEKGSLFLVDHGILSGVHTNILNGKPQFSAAPMTLLHQSSGSGPLLPIAIQLKQTPGPDNP----IFLPS---DDTWDWLLAKTWVRNSEFYIHEAVTHLLHAHLIPEVFALATLRQLPRCHPLF 400          
The following BLAST results are available for this feature:
BLAST of FC931207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
LOX2_ORYSJ1.700e-4340.57Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=... [more]
LOX5_MOUSE3.022e-1630.57Arachidonate 5-lipoxygenase OS=Mus musculus GN=Alo... [more]
LOX5_RAT3.947e-1631.09Arachidonate 5-lipoxygenase OS=Rattus norvegicus G... [more]
LOX5_HUMAN6.733e-1632.62Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALO... [more]
LOX5_MESAU9.722e-1531.09Arachidonate 5-lipoxygenase OS=Mesocricetus auratu... [more]
LX15B_HUMAN2.027e-1228.19Arachidonate 15-lipoxygenase B OS=Homo sapiens GN=... [more]
LX15B_RAT2.648e-1229.26Arachidonate 15-lipoxygenase B OS=Rattus norvegicu... [more]
LOXE3_MOUSE2.648e-1228.19Epidermis-type lipoxygenase 3 OS=Mus musculus GN=A... [more]
LOXE3_HUMAN1.314e-1127.27Epidermis-type lipoxygenase 3 OS=Homo sapiens GN=A... [more]
LX15B_MOUSE6.521e-1127.27Arachidonate 15-lipoxygenase B OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34102F06EF PostHarvP1 Citrus clementina cDNA clone C34102F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931207 ID=FC931207; Name=FC931207; organism=Citrus clementina; type=EST; length=704bp
GAAGGAGTCAACTTGCCTCCACCCAAACAGGAAGGTTTTTGGAACACACT
GCTTCCCAGATTGGTTAAGGCAATTGAGGATACAGGAGATAATATTTTGC
TGTTTGAGACGCCAGAAACAATGGACAGAGACAAATTCTTTTGGTTTAGG
GATGAGGAATTTTCTAGGCAAACTCTCGCTGGTCTCAACCCGTATAGCAT
AAGGTTGATCACGGAATGGCCGTTGAAAAGCACACTCGATCCTGAAATTT
ACGGACCACCAGAATCAGCAATTACCACAGAATTGATTGAAAAAGAAATT
GGAGGAATGATTTCTGTTGAAGAGGCTATAAAACAAAAGAAGTTGTTCAT
CTTAGATTACCATGACCTATTTTTACCATATGTGGAAAAAGTGAGACAAC
TCAAAAGCACAACGTTGTATGGATCTCGCACAATTTTCTTCCTAACACCA
GCCGGCACATTGAGACCAATAGCTATTGAGCTCACTCGGCCTCCAATGAA
TGGCAAGCCACAATGGAAACAAGTGTTTTTACCTTCTTGGCACTCTACTG
AGTGCTGGCTTTGGAAGCTAGCCAAAGCTCATGTCCTTGCTCATGATGCT
GGCTATCACCAGCTTGTCAGCCATTGGTTAAGAACTCATTGTTGCACAGA
ACCTTACGTAATAGCAACCAATCGGCAACTCAGCGTGATGCATCCAATCT
ATAG
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