FC931209

Overview
NameFC931209
Unique NameFC931209
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPC_STAAB (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=clpC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 48/110 (43.64%), Postives = 68/110 (61.82%), Query Frame = 2
Query:  365 MFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694
            +F R TE+A +++  AQEEA RL H+ +                AAKVL+S  I       EVEK+IG G   V   + +TPRAK+V+ELS++EAR+L HN++G+EH+LL
Sbjct:    2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDHVGT-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILL 110          
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPC_STAA8 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain NCTC 8325) GN=clpC PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 48/110 (43.64%), Postives = 68/110 (61.82%), Query Frame = 2
Query:  365 MFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694
            +F R TE+A +++  AQEEA RL H+ +                AAKVL+S  I       EVEK+IG G   V   + +TPRAK+V+ELS++EAR+L HN++G+EH+LL
Sbjct:    2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDHVGT-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILL 110          
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPC_STAA3 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain USA300) GN=clpC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 48/110 (43.64%), Postives = 68/110 (61.82%), Query Frame = 2
Query:  365 MFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694
            +F R TE+A +++  AQEEA RL H+ +                AAKVL+S  I       EVEK+IG G   V   + +TPRAK+V+ELS++EAR+L HN++G+EH+LL
Sbjct:    2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDHVGT-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILL 110          
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPC_STAHJ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 47/110 (42.73%), Postives = 67/110 (60.91%), Query Frame = 2
Query:  365 MFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694
            +F R TE+A +++  AQEEA RL H+ +                AAKVL+S  I       EVEK+IG G       + +TPRAK+V+ELS++EAR+L HN++G+EH+LL
Sbjct:    2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKVIEEVEKLIGHGQDQTGT-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILL 110          
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPC_STAS1 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 46/110 (41.82%), Postives = 69/110 (62.73%), Query Frame = 2
Query:  365 MFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694
            +F R TE+A +++  AQEEA RL H+ +                AAKVL++  I  +    EVEK+IG G   +   + +TPRAK+V+ELS++EAR+L HN++G+EH+LL
Sbjct:    2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLETFEITEEKVVEEVEKLIGHGQEQMGA-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILL 110          
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPC_STAES (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 47/110 (42.73%), Postives = 67/110 (60.91%), Query Frame = 2
Query:  365 MFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694
            +F R TE+A +++  AQEEA RL H+ +                AAKVL S  I       EVEK+IG G   +   + +TPRAK+V+ELS++EAR+L HN++G+EH+LL
Sbjct:    2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLVSFNITEDKVIEEVEKLIGHGQEQMGT-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILL 110          
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPC_STAEQ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 47/110 (42.73%), Postives = 67/110 (60.91%), Query Frame = 2
Query:  365 MFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694
            +F R TE+A +++  AQEEA RL H+ +                AAKVL S  I       EVEK+IG G   +   + +TPRAK+V+ELS++EAR+L HN++G+EH+LL
Sbjct:    2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLVSFNITEDKVIEEVEKLIGHGQEQMGT-LHYTPRAKKVIELSMDEARKLHHNFVGTEHILL 110          
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPC_CHLPN (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia pneumoniae GN=clpC PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 46/111 (41.44%), Postives = 65/111 (58.56%), Query Frame = 2
Query:  365 MFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIP-FTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694
            MFE+FT +A ++I LA++EA+RL HN++                A  VL+++GI+   AR EVE++IG G        P  T R K+  E + EEA  L HNY+G+EHLLL
Sbjct:    1 MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGVAVNVLRNLGIDFDTARQEVERLIGYGPEIQVYGDPALTGRVKKSFESANEEASLLEHNYVGTEHLLL 111          
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPC_CHLTR (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia trachomatis GN=clpC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.617e-14
Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = 2
Query:  365 MFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGF-VAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694
            MFE+FT +A ++I LA++EA+RL HN++                A  VL+++G++   A+ EVE++IG G    V  +   T R K+  E + EEA  L HNY+G+EHLLL
Sbjct:    1 MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGVAVNVLRTLGVDFDTAKHEVERLIGYGPEIQVCGDPALTGRVKKSFESANEEAALLEHNYVGTEHLLL 111          
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPC_CHLMU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Chlamydia muridarum GN=clpC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 44/111 (39.64%), Postives = 65/111 (58.56%), Query Frame = 2
Query:  365 MFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIP-FTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694
            MFE+FT +A ++I LA++EA+RL HN++                A  VL+++G++   A+ EVE++IG G        P  T R K+  E + EEA  L HNY+G+EHLLL
Sbjct:   17 MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGVAVNVLRTLGVDFDTAKNEVERLIGYGPEIQVYGDPALTGRVKKSFESANEEASILEHNYVGTEHLLL 127          
The following BLAST results are available for this feature:
BLAST of FC931209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CLPC_STAAB7.756e-1743.64ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAA87.756e-1743.64ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAA37.756e-1743.64ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAHJ3.849e-1642.73ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAS18.575e-1641.82ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAES8.575e-1642.73ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAEQ8.575e-1642.73ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_CHLPN4.256e-1541.44Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_CHLTR1.617e-1439.64Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_CHLMU2.112e-1439.64Probable ATP-dependent Clp protease ATP-binding su... [more]

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Properties
Property NameValue
Genbank descriptionC34102F08EF PostHarvP1 Citrus clementina cDNA clone C34102F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931209 ID=FC931209; Name=FC931209; organism=Citrus clementina; type=EST; length=695bp
GATATTTTTTTGCCCTTTTTCTCTTTTCTCTTTTAATTTTTATTTATCAA
AGCAAACGCCTTTGCTTTTTTCTCTCTAATATCTAGATTAAATCATGGCT
AGGCTTCTGGCTCAGTTAACTAATGCCCCTGCTTTGGTTCCTGGCGGAAG
ACATTTCCAGTCCCAAAATGCTGGAAGATCAAGAAGGAATGTCAAAATGA
TGTCTTATATGCAGCCGTCTGCTTCAAGAATTAGTAGTTTCTCAGGATTG
CGACGCTCCAATGCTTTAGATACATTCACCTGTGATTTCCATTCCACGGT
GGCTGTTTCACTCTCTTCTAGACGAGGAAAGTCTGGAAGAGCTGGTGGAT
TTGTTGTTAAAGCCATGTTTGAGCGCTTCACAGAGAAAGCAATTAAACTG
ATTATGCTTGCCCAAGAGGAAGCAAGACGGCTTGGCCACAATTTTGTTGG
CACGGAGCAAATTCTATTGGGTCTTATTGGTGAAGGCACTGGCATTGCTG
CTAAGGTTCTTAAATCAATGGGAATCAATCTTAAAGATGCACGTGTAGAA
GTGGAGAAGATTATTGGAAGGGGAAGTGGTTTTGTTGCTGTGGAAATTCC
GTTCACTCCTCGTGCAAAGCGTGTCTTGGAGCTTTCTCTGGAGGAAGCCC
GCCAGCTGGGCCATAATTATATTGGGTCCGAGCATCTTCTCCTTG
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