FC931212

Overview
NameFC931212
Unique NameFC931212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length637
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931212 vs. ExPASy Swiss-Prot
Match: DHH1_NEOFI (ATP-dependent RNA helicase dhh1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.268e-24
Identity = 49/63 (77.78%), Postives = 59/63 (93.65%), Query Frame = 2 
Query:    2 INFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 190
            INFDFPKN+ETYLHR+GRSGRFGHLGLA+NLI ++DRFNLY+IEQELGTEI+ IP +ID+ +Y
Sbjct:  357 INFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKIEQELGTEIQPIPQNIDKKLY 419
[Close]
BLAST of FC931212 vs. ExPASy Swiss-Prot
Match: DHH1_ASPTN (ATP-dependent RNA helicase dhh1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.268e-24
Identity = 49/63 (77.78%), Postives = 59/63 (93.65%), Query Frame = 2 
Query:    2 INFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 190
            INFDFPKN+ETYLHR+GRSGRFGHLGLA+NLI ++DRFNLY+IEQELGTEI+ IP +ID+ +Y
Sbjct:  357 INFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKIEQELGTEIQPIPQNIDKKLY 419
[Close]
BLAST of FC931212 vs. ExPASy Swiss-Prot
Match: DHH1_ASPOR (ATP-dependent RNA helicase dhh1 OS=Aspergillus oryzae GN=dhh1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.268e-24
Identity = 49/63 (77.78%), Postives = 59/63 (93.65%), Query Frame = 2 
Query:    2 INFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 190
            INFDFPKN+ETYLHR+GRSGRFGHLGLA+NLI ++DRFNLY+IEQELGTEI+ IP +ID+ +Y
Sbjct:  357 INFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKIEQELGTEIQPIPQNIDKKLY 419
[Close]
BLAST of FC931212 vs. ExPASy Swiss-Prot
Match: DHH1_ASPFU (ATP-dependent RNA helicase dhh1 OS=Aspergillus fumigatus GN=dhh1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.268e-24
Identity = 49/63 (77.78%), Postives = 59/63 (93.65%), Query Frame = 2 
Query:    2 INFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 190
            INFDFPKN+ETYLHR+GRSGRFGHLGLA+NLI ++DRFNLY+IEQELGTEI+ IP +ID+ +Y
Sbjct:  357 INFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKIEQELGTEIQPIPQNIDKKLY 419
[Close]
BLAST of FC931212 vs. ExPASy Swiss-Prot
Match: DHH1_PHANO (ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria nodorum GN=DHH1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.281e-24
Identity = 50/63 (79.37%), Postives = 58/63 (92.06%), Query Frame = 2 
Query:    2 INFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 190
            INFDFPKN+ETYLHR+GRSGRFGHLGLA+NLI +EDRFNLYRIEQELGTEI+ IP  I++ +Y
Sbjct:  359 INFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYRIEQELGTEIQPIPQVIEKNLY 421
[Close]
BLAST of FC931212 vs. ExPASy Swiss-Prot
Match: DHH1_YARLI (ATP-dependent RNA helicase DHH1 OS=Yarrowia lipolytica GN=DHH1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.242e-23
Identity = 48/63 (76.19%), Postives = 57/63 (90.48%), Query Frame = 2 
Query:    2 INFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 190
            INFDFPKN+ETYLHR+GRSGRFGHLG+A+NLI + DR+NLY+IEQELGTEIK IP  ID+ +Y
Sbjct:  338 INFDFPKNAETYLHRIGRSGRFGHLGIAINLINWNDRYNLYKIEQELGTEIKPIPAQIDKNLY 400
[Close]
BLAST of FC931212 vs. ExPASy Swiss-Prot
Match: DDX6_DROME (Putative ATP-dependent RNA helicase me31b OS=Drosophila melanogaster GN=me31B PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 2.767e-23
Identity = 49/63 (77.78%), Postives = 58/63 (92.06%), Query Frame = 2 
Query:    2 INFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 190
            INFDFP+ +ETYLHR+GRSGRFGHLG+A+NLITYEDRF+L+RIE+ELGTEIK IP  ID A+Y
Sbjct:  368 INFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEKELGTEIKPIPKVIDPALY 430
[Close]
BLAST of FC931212 vs. ExPASy Swiss-Prot
Match: DHH1_VANPO (ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.613e-23
Identity = 48/63 (76.19%), Postives = 57/63 (90.48%), Query Frame = 2 
Query:    2 INFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 190
            INFDFPK +ETYLHR+GRSGRFGHLGLA+NLI + DRFNLY+IEQELGTEI+ IP  ID+++Y
Sbjct:  344 INFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIQAIPATIDKSLY 406
[Close]
BLAST of FC931212 vs. ExPASy Swiss-Prot
Match: DHH1_MAGGR (ATP-dependent RNA helicase DHH1 OS=Magnaporthe grisea GN=DHH1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.613e-23
Identity = 47/63 (74.60%), Postives = 59/63 (93.65%), Query Frame = 2 
Query:    2 INFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 190
            INFDFPKN+ETYLHR+GRSGR+GHLGLA+NLI++EDRFNLY IE++LGTEI+ IP  ID+++Y
Sbjct:  346 INFDFPKNAETYLHRIGRSGRYGHLGLAINLISWEDRFNLYNIERDLGTEIQPIPSTIDKSLY 408
[Close]
BLAST of FC931212 vs. ExPASy Swiss-Prot
Match: DHH1_ASHGO (ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.613e-23
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 2 
Query:    2 INFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 190
            INFDFPK +ETYLHR+GRSGRFGHLGLA+NLI + DRFNLY+IEQELGTEI  IP  ID+++Y
Sbjct:  339 INFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAQIDKSLY 401
The following BLAST results are available for this feature:
BLAST of FC931212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
DHH1_NEOFI3.268e-2477.78ATP-dependent RNA helicase dhh1 OS=Neosartorya fis... [more]
DHH1_ASPTN3.268e-2477.78ATP-dependent RNA helicase dhh1 OS=Aspergillus ter... [more]
DHH1_ASPOR3.268e-2477.78ATP-dependent RNA helicase dhh1 OS=Aspergillus ory... [more]
DHH1_ASPFU3.268e-2477.78ATP-dependent RNA helicase dhh1 OS=Aspergillus fum... [more]
DHH1_PHANO7.281e-2479.37ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria n... [more]
DHH1_YARLI1.242e-2376.19ATP-dependent RNA helicase DHH1 OS=Yarrowia lipoly... [more]
DDX6_DROME2.767e-2377.78Putative ATP-dependent RNA helicase me31b OS=Droso... [more]
DHH1_VANPO3.613e-2376.19ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma... [more]
DHH1_MAGGR3.613e-2374.60ATP-dependent RNA helicase DHH1 OS=Magnaporthe gri... [more]
DHH1_ASHGO3.613e-2376.19ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34102F12EF PostHarvP1 Citrus clementina cDNA clone C34102F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931212 ID=FC931212; Name=FC931212; organism=Citrus clementina; type=EST; length=637bp
CATTAACTTTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTG
GTCGATCTGGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACT
TACGAGGACCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGA
AATTAAGCAGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGAT
TTATGGCCGGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCT
GAGGCTGTTGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCATTTTAT
GAACTGGTTATGTGTGTTGGTGGAAGACTTGCAGCTGGTGCTGTGCGATT
AACCCTGGATCCTTTTTCTCTCTTGGTTTCTGGATTTTCATAGTTCTAAA
TATTTATCAGGATTGTAGAAGAGTTTTAGAACGGTTTATAAATCCCAGAT
AGAAGCTGGGTCCAGTTCACAGCTGCGTTTGCTTTCATGGATGGACTGGT
TTGGTACTTGTATGCCCATGTTCTAGTATGATTTACTGCTGAATTTGGAG
GTTGTACTTTGCAAAAAATTCGCCTTTTTTCTTTTGAACATCTTTAAAAT
TCCTTGGTGCATTTTCTTANGTTCACTCTCGCAGAAC
back to top