FC931212

Overview
NameFC931212
Unique NameFC931212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length637
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC931212 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNE (ATP-dependent RNA helicase DHH1 OS=Cryptococcus neoformans GN=DHH1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.285e-20
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 2 
Query:    2 INFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 190
            INFDFP+ +E+YLHR+GRSGRFGHLGLA++L+T EDR NLYRIE ELGTEI  IP  ID  +Y
Sbjct:  347 INFDFPRTAESYLHRIGRSGRFGHLGLAISLLTLEDRHNLYRIESELGTEIAPIPAVIDPVLY 409
[Close]
BLAST of FC931212 vs. ExPASy Swiss-Prot
Match: CGH1_CAEEL (ATP-dependent RNA helicase cgh-1 OS=Caenorhabditis elegans GN=cgh-1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.285e-20
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 2 
Query:    2 INFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 190
            INFDFP+N+ETYLHR+GRSGRFGHLG+A+NLITYEDR  L RIEQEL T I+ IP  +D  +Y
Sbjct:  353 INFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRHTLRRIEQELRTRIEPIPKTVDPKLY 415
[Close]
BLAST of FC931212 vs. ExPASy Swiss-Prot
Match: DHH1_PICGU (ATP-dependent RNA helicase DHH1 OS=Pichia guilliermondii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.863e-20
Identity = 44/63 (69.84%), Postives = 54/63 (85.71%), Query Frame = 2 
Query:    2 INFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 190
            INFDFPK +ETYLHR+GRSGRFGHLGLA+N I ++DR +L+ IE ELGTEIK IP  ID+++Y
Sbjct:  339 INFDFPKTAETYLHRIGRSGRFGHLGLAINFIHWDDRKSLFNIETELGTEIKPIPSDIDRSLY 401
The following BLAST results are available for this feature:
BLAST of FC931212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
DHH1_CRYNE1.285e-2071.43ATP-dependent RNA helicase DHH1 OS=Cryptococcus ne... [more]
CGH1_CAEEL1.285e-2071.43ATP-dependent RNA helicase cgh-1 OS=Caenorhabditis... [more]
DHH1_PICGU2.863e-2069.84ATP-dependent RNA helicase DHH1 OS=Pichia guillier... [more]

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Properties
Property NameValue
Genbank descriptionC34102F12EF PostHarvP1 Citrus clementina cDNA clone C34102F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931212 ID=FC931212; Name=FC931212; organism=Citrus clementina; type=EST; length=637bp
CATTAACTTTGATTTTCCTAAGAACTCGGAGACATATCTGCACAGAGTTG
GTCGATCTGGAAGGTTTGGACACCTTGGATTAGCTGTGAATTTGATTACT
TACGAGGACCGCTTCAACTTGTATAGGATTGAGCAAGAACTCGGGACTGA
AATTAAGCAGATACCTCCGCATATTGATCAGGCAATTTACTGCAGGTGAT
TTATGGCCGGTATCTTGCTATATAGCCAATGGTGGTAGCAATGGATTCCT
GAGGCTGTTGATTCAAGGCACTTGGCTCTGCAGCTGAGGAAGCATTTTAT
GAACTGGTTATGTGTGTTGGTGGAAGACTTGCAGCTGGTGCTGTGCGATT
AACCCTGGATCCTTTTTCTCTCTTGGTTTCTGGATTTTCATAGTTCTAAA
TATTTATCAGGATTGTAGAAGAGTTTTAGAACGGTTTATAAATCCCAGAT
AGAAGCTGGGTCCAGTTCACAGCTGCGTTTGCTTTCATGGATGGACTGGT
TTGGTACTTGTATGCCCATGTTCTAGTATGATTTACTGCTGAATTTGGAG
GTTGTACTTTGCAAAAAATTCGCCTTTTTTCTTTTGAACATCTTTAAAAT
TCCTTGGTGCATTTTCTTANGTTCACTCTCGCAGAAC
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