FC931219

Overview
NameFC931219
Unique NameFC931219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13042 contig Ccv1_Contig13042:3..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 9.486e-71
Identity = 126/203 (62.07%), Postives = 149/203 (73.40%), Query Frame = 1
Query:   97 LVCLMWVADARLPGDYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKC--ANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNW 699
            L  L    DA  P   + G     HATFYGGSDASGTMGGACGYG+LYS GYG  TAALSTALFN+G SCG C+ I C  A +  WC  G+ S+++TATNFCPPN+ALP++NGGWCNPP  HFD+A P + KI  YR GIVPV ++RV C KKGG+RF ING  YF LV + NV GAG I  V++KGS+TGW++MSRNWG NW
Sbjct:   11 LAALFIAVDAFRPSGLTNG-----HATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTALFNDGASCGECYRITCDHAADSRWCLKGA-SVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSIKGSKTGWLAMSRNWGANW 207          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 2.113e-70
Identity = 122/202 (60.40%), Postives = 149/202 (73.76%), Query Frame = 1
Query:  100 VCLMWVADARLPGDYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKC--ANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNW 699
            +CL  VA     G  +   W  A ATFYGGSD SGTMGGACGYGNLY QGYGV+ AALS ALFN+G SCG C+ I C  +  P WC +G+ ++ VTATN CPPN+ALPSD GGWCNPPRPHFD++ P + +I  Y+AGIVPV Y+RV C ++GG+RFT+ G  YF LVL+TNVAG+G +    +KG+ TGW+ MSRNWG NW
Sbjct:   11 LCLAVVAACAAGGAVAD--WSPATATFYGGSDGSGTMGGACGYGNLYDQGYGVDNAALSQALFNDGASCGQCYLIVCDTSRAPQWCKAGT-AVTVTATNLCPPNWALPSDGGGWCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQRVRCWRQGGVRFTVAGLNYFELVLITNVAGSGSVASAWIKGTNTGWIQMSRNWGANW 209          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 264.618 bits (675), Expect = 3.605e-70
Identity = 115/183 (62.84%), Postives = 147/183 (80.33%), Query Frame = 1
Query:  157 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKC--ANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNW 699
            W    ATFYGG+DASGTMGGACGYGNLY+ GYG NTAALS+ LFN+G SCG C+ I C  A  P WC +G+ ++ +TATN CPPN+ALPS++GGWCNPPRPHFD+A P +L+I  Y+AGI+PV Y++V C ++GGIRFT+ GF +F LVLV+NVAG+G +  V+VKG  TGW++++RNWG NW
Sbjct:   27 WNKGTATFYGGADASGTMGGACGYGNLYTAGYGTNTAALSSVLFNDGWSCGQCYLIMCDAAATPQWCRAGA-AVTITATNLCPPNWALPSNSGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQVKCWRQGGIRFTMGGFNFFELVLVSNVAGSGSVRSVSVKGGSTGWITLNRNWGANW 208          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.149e-70
Identity = 118/182 (64.84%), Postives = 144/182 (79.12%), Query Frame = 1
Query:  157 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKC-ANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNW 699
            W  A ATFYGGSD +GTMGGACGYGNLY+ GYG+N AALS+ALFN+G  CGAC+ I C  ++  WC  G+ SI +TATN CPPNYA  SD GGWCNPPR HFD++ P +  IA Y+AGIVPV+++RVPC+K GGIRFTI+G  YF LV V NV G+G + +V++KGS+T WM+MSRNWGQNW
Sbjct:   23 WTPATATFYGGSDGAGTMGGACGYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGT-SITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTISGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNW 203          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.149e-70
Identity = 122/194 (62.89%), Postives = 144/194 (74.23%), Query Frame = 1
Query:  145 SGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSG------SPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVK---GSRTGWMSMSRNWGQNW 699
            + G W  AHATFYGG+DASGTMGGACGYGN Y QGYG +TAALS  +F +GLSCGACFE++C         G        SI+VTAT+ CP N+ALP D GGWCNPP  HFDL+ P FL+IA +++GIVPVSYRRV CR+KGG+RFTING  YFNLVLV+NV GAGD+  V VK   G +  W +M+RNWGQNW
Sbjct:   26 AAGRWTDAHATFYGGADASGTMGGACGYGNTYGQGYGTDTAALSAVMFGDGLSCGACFELRCGGGGGGDRRGCLPPAAGKSIVVTATDLCPANHALPGDRGGWCNPPLHHFDLSQPAFLRIARFQSGIVPVSYRRVACRRKGGMRFTINGHSYFNLVLVSNVGGAGDVHAVAVKAGGGRKARWQAMARNWGQNW 219          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.049e-69
Identity = 116/180 (64.44%), Postives = 144/180 (80.00%), Query Frame = 1
Query:  163 SAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKC-ANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNW 699
            S  ATFYGGSDASGTMGGACGYGNLYS GYG NTAALS+ALFN+G +CG C++I C  +   WC +G+ S+ +TATN CPP+Y+ PS++GGWCNPPR HFD+A P + +I  YR GIVPV+++RV C +KGG+RFTING  YF LVL+TNV G G I  V +KG++TGW++MSRNWG NW
Sbjct:   26 SGTATFYGGSDASGTMGGACGYGNLYSTGYGTNTAALSSALFNDGAACGECYQITCDQSNSKWCKAGT-SVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKGGVRFTINGNSYFELVLITNVGGPGSIKSVQIKGTKTGWVTMSRNWGANW 204          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 262.692 bits (670), Expect = 1.370e-69
Identity = 124/197 (62.94%), Postives = 148/197 (75.13%), Query Frame = 1
Query:  115 VADARLPGDYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCAN--EPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNW 699
            +A A L    + G W S  ATFYGGSDASGTMGGACGYGNLY  GYG NTAALS+ALFN+G SCG C++I C +  EP WC  G  ++ +T TN CPPNYAL S++GGWCNPPR HFD+A P +L+I  Y+AGIVPV Y+RVPC K+GG+RFT+ GF YF LVL++NVAG+G I  V VKG  T  M +SRNWG NW
Sbjct:   19 IAAASLIAPTTAG-WSSGTATFYGGSDASGTMGGACGYGNLYWSGYGTNTAALSSALFNDGASCGQCYQIACDHQAEPRWCLQGR-TVTITGTNLCPPNYALSSNDGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGGFNYFELVLISNVAGSGSIQSVWVKGPNTDRMPLSRNWGANW 213          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.052e-69
Identity = 121/211 (57.35%), Postives = 150/211 (71.09%), Query Frame = 1
Query:   88 ILFLVCLMWVADARLP------GDYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGS-RTGWMSMSRNWGQNW 699
            ++FLV L    DA  P      G ++ GPW+ AHATFYGG D SGT+ GACGY +   +GYGV T A+ST LF  G  CGAC+E+KC + P  C  G+  ++VTATN CPPN    +DNGGWCNPPR HFDL+MP FL+IA+ +AGIVP+SYRRVPC K GGIR+TI G  YFNLV+V+NV GAGD+  ++VKG+ R  W  + RNWGQ W
Sbjct:   14 VVFLVALA-AGDAAPPKVHRNHGKFTAGPWKQAHATFYGGRDGSGTLDGACGYKDTSKEGYGVQTVAVSTPLFGAGAGCGACYEVKCVDSPDGCKVGAAPLVVTATNLCPPNPGQSNDNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVPCVKVGGIRYTITGNPYFNLVMVSNVGGAGDVAGLSVKGNKRVKWTPLKRNWGQEW 223          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.798e-69
Identity = 117/186 (62.90%), Postives = 140/186 (75.27%), Query Frame = 1
Query:  142 YSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNW 699
            Y+G PW++A ATFYG    S TMGGACGYGN+Y  GYGV T ALSTALFN G +CG CF++KC + P  C+ GSP+ +VTATN CPPNY   S+NGGWCNPPR HFDL  P F+KIA ++AGI+PVSYRRV C+K GGIRF   G  Y+ LV V NV G GDI  + VKGSRTGW++MS NWG ++
Sbjct:   26 YAGTPWRTASATFYGDDTGSATMGGACGYGNMYDSGYGVATTALSTALFNEGYACGQCFQLKCVSSPN-CYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASY 210          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 258.455 bits (659), Expect = 2.583e-68
Identity = 120/205 (58.54%), Postives = 148/205 (72.20%), Query Frame = 1
Query:   91 LFLVCLMWVADARLPGDYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPA--WCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKKGGIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTGWMSMSRNWGQNW 699
            L ++C +  A   L    +   W  A ATFYGG+D SGTMGGACGYGNLY QGYG+  AALSTALFN+G +CG C+ I C  + A  WC     ++ VTATN CPPN+ALPSD GGWCNPPR HFD++ P + +I  YRAGIVPV YRRV C ++GG+RFT+ GF +F LVLV NVAG+G +  V+V+G+ TGW+ MSRNWG NW
Sbjct:    8 LLVLCTILAARMALA---AADDWIPATATFYGGNDGSGTMGGACGYGNLYDQGYGLENAALSTALFNDGAACGQCYLIVCDTDKAGRWCKPRG-AVTVTATNLCPPNWALPSDGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRRGGVRFTVGGFDHFELVLVANVAGSGSVAAVSVRGAGTGWLQMSRNWGANW 208          
The following BLAST results are available for this feature:
BLAST of FC931219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
EXP11_ARATH9.486e-7162.07Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXP31_ORYSJ2.113e-7060.40Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ORYSJ3.605e-7062.84Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP33_ORYSJ6.149e-7064.84Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ORYSJ6.149e-7062.89Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ORYSJ1.049e-6964.44Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP15_ORYSJ1.370e-6962.94Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP32_ORYSJ3.052e-6957.35Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ARATH6.798e-6962.90Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP27_ORYSJ2.583e-6858.54Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionC34102G08EF PostHarvP1 Citrus clementina cDNA clone C34102G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931219 ID=FC931219; Name=FC931219; organism=Citrus clementina; type=EST; length=699bp
GAACCAAAACTAACTACACGGAGCTGTGTCTTCTTTGTGAGTGAAGAGAA
TAAAGAAACGATGGCGGTGGTGAATTGGGCTGGCGTTATCCTCTTTTTAG
TATGCTTAATGTGGGTGGCTGATGCAAGACTCCCTGGCGATTACTCCGGT
GGCCCATGGCAAAGCGCCCATGCCACCTTTTACGGCGGCTCTGACGCCTC
CGGTACCATGGGAGGAGCGTGCGGTTACGGTAACTTGTACAGCCAGGGCT
ACGGCGTGAACACAGCGGCGCTGAGCACGGCGCTGTTCAACAATGGCTTG
AGCTGCGGTGCTTGCTTTGAGATCAAGTGTGCAAACGAACCCGCGTGGTG
TCACTCCGGGAGCCCTTCCATTTTGGTTACCGCTACAAACTTTTGCCCGC
CCAATTACGCACTCCCAAGTGACAATGGCGGCTGGTGTAACCCTCCTCGC
CCTCATTTTGACCTCGCCATGCCCATGTTCCTCAAGATTGCTGAGTACCG
CGCCGGCATCGTCCCCGTCTCCTACCGCCGGGTACCATGCCGCAAGAAGG
GAGGAATCAGGTTCACAATAAACGGGTTCCGCTACTTCAACTTGGTTCTG
GTCACCAACGTGGCGGGTGCAGGGGATATCCTGAGGGTGAACGTGAAAGG
GTCAAGAACTGGCTGGATGAGCATGAGCCGTAACTGGGGCCAAAACTGG
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