FC931219

Overview
NameFC931219
Unique NameFC931219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13042 contig Ccv1_Contig13042:3..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXPB4_ORYSJ (Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXPB4 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 60/203 (29.56%), Postives = 97/203 (47.78%), Query Frame = 1
Query:  151 GPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKG-GIRFTINGFR---YFNLVLVTNVAGAGDILRVNVKGSRTG-------WMSMSRNWGQNW 699
            GPW  A AT+YG  + +G    GGACG+ +     +   T+  +  LF +G  CG+C++I+C  + + C   S ++++T  N+ P     P            HFDL+   F ++A+         +GI+ + + RVPC   G  I F +  +    YF  VLV    G GD+++V++  S+T        W  M  +WG  W
Sbjct:   53 GPWTKARATWYGQPNGAGPDDNGGACGFKHTNQYPFMSMTSCGNQPLFKDGKGCGSCYKIRCTKDQS-CSGRSETVIITDMNYYP---VAPF-----------HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYF-AVLVEYEDGDGDVVQVDLMESKTAHGPPTGRWTPMRESWGSIW 239          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXB10_MAIZE (Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.295e-16
Identity = 72/224 (32.14%), Postives = 106/224 (47.32%), Query Frame = 1
Query:   88 ILFLVCLMWVADARLPGDYS-----GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSIL-VTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTIN---GFRYFNLVLVTNVAGAGDILRVNV--KGSRTGWMSMSRNWGQNW 699
            ++FLV   W    ++P   +     G  W  A AT+YG    +G    GG CGY ++    +    A  +  +F +GL CG+CFEIKC ++P  C SG P ++ +T  N+ P                  HFDLA   F  +A+        +AGI+ + +RRV C+    + F +    G  Y  L LV  V G GDI+ V+V  KGS T +  +  +WG  W
Sbjct:   22 LVFLVRGAWCGPPKVPPGKNITATYGKDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKPPFNSMGACGNIPIFKDGLGCGSCFEIKC-DKPVEC-SGKPVVVHITDMNYEP--------------IAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSKVTFHLEKGCGPNYLAL-LVKYVDGDGDIVAVDVKEKGSDT-YEPLKHSWGAIW 227          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXPB2_ARATH (Putative expansin-B2 OS=Arabidopsis thaliana GN=EXPB2 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 63/198 (31.82%), Postives = 95/198 (47.98%), Query Frame = 1
Query:  145 SGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIA-------EYRAGIVPVSYRRVPCRKKG-GIRFTINGFRYFN--LVLVTNVAGAGDILRVNVKGSRTG--WMSMSRNWGQNW 699
            S   W  A +T+YG     G+ GGACGYGN  +Q  +    +A   +LF +G  CGAC+++KC ++ A   S +P + V  T+ CP            C     HFDL+   F  +A           G + + Y++V C   G  + F ++     N   VLV  V G G+I R+ +K +     W+SMS++WG  W
Sbjct:   43 SDSDWSIAGSTWYGNPTGYGSDGGACGYGNAVAQPPFSKMVSAGGPSLFKSGKGCGACYQVKCTSKSAC--SKNP-VTVVITDECP-----------GCVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQALDSDKWLSMSQSWGAVW 226          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXPB9_ORYSJ (Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXPB9 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.914e-16
Identity = 60/196 (30.61%), Postives = 93/196 (47.45%), Query Frame = 1
Query:  154 PWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIA------EYR-AGIVPVSYRRVPCRKKGGIRFTINGFRYFN----LVLVTNVAGAGDILRVNV-KGSRTGWMSMSRNWGQNW 699
            PW  A AT+YG    SG+   GGACG  N+    Y    +  +  +F +G  CG+C+E+KC  +PA C     ++ +T  N+ P +                HFD +   F  +A      E R AGI+ + +RRV C+  GG + T +  +  N     VLV  VA  GD++++++ +     W  M  +WG  W
Sbjct:   42 PWLPARATWYGQPYGSGSTDNGGACGIKNVNLPPYNGMISCGNVPIFKDGRGCGSCYEVKC-EQPAACSKQPVTVFITDMNYEPIS--------------AYHFDFSGKAFGAMACPGKETELRKAGIIDMQFRRVRCKYPGGQKVTFHVEKGSNPNYLAVLVKFVADDGDVIQMDLQEAGLPAWRPMKLSWGAIW 222          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXPB8_ORYSJ (Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXPB8 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.914e-16
Identity = 56/196 (28.57%), Postives = 90/196 (45.92%), Query Frame = 1
Query:  157 WQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKG---GIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTG---WMSMSRNWGQNW 699
            W +A AT+YG  + +G    GGACG+  +    +   T+  +  L+  G  CG+C+ ++C   PA C   + ++ +T  N+ P +              + HFDL+   F ++A+        RAGI+ V + RVPC   G   G          +  VLV    G GD+ +V++K +  G   W  M  +WG  W
Sbjct:   48 WGNAKATWYGQPNGAGAADNGGACGFKKVNQYPFMGMTSCGNQPLYKGGKGCGSCYRVRCNRNPA-CSGNAQTVAITDMNYFPLS--------------QYHFDLSGIAFGRLAKPGRADDLRRAGIIDVQFARVPCEFPGLKVGFHVEEGSSPVYLAVLVEYENGDGDVAQVDLKEAGAGGGRWTPMRESWGSVW 228          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXB11_MAIZE (Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.914e-16
Identity = 71/226 (31.42%), Postives = 106/226 (46.90%), Query Frame = 1
Query:   79 AGVILFLVCLMWVADARLPGDYS-----GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSIL-VTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTINGFRYFN--LVLVTNVAGAGDILRVNV--KGSRTGWMSMSRNWGQNW 699
            A  + FLV   W    ++P   +     G  W  A AT+YG    +G    GG CGY ++    +    A  +  +F +GL CG+CFEIKC ++PA C SG P ++ +T  N+ P                  HFDLA   F  +A+        +AGI+ + +RRV C+    + F +      N   +LV  V G GDI+ V++  KGS T +  +  +WG  W
Sbjct:   18 AVALAFLVGGAWCGPPKVPPGKNITAKYGSDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKAPFNSMGACGNVPIFKDGLGCGSCFEIKC-DKPAEC-SGKPVVVYITDMNYEP--------------IAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSKVTFHLEKGCNPNYLALLVKYVDGDGDIVAVDIKEKGSDT-YEPLKHSWGAIW 226          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXPB9_MAIZE (Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.487e-15
Identity = 58/198 (29.29%), Postives = 90/198 (45.45%), Query Frame = 1
Query:  151 GPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRP-HFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTINGFRYFN----LVLVTNVAGAGDILRVNVKGSRTG-WMSMSRNWGQNW 699
            G W +A AT+YG  + +G    GGACG  N+    Y   TA  +  +F +G  CG+C+E++C  +P  C     ++ +T  N+                P  P HFDL+   F  +A+          GI+ V +RRV C+   G +   +  +  N     VLV  VA  GDI+ + ++   +  W  M  +WG  W
Sbjct:   41 GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPE-CSGNPVTVFITDMNY---------------EPIAPYHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYVAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIW 222          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXPB1_MAIZE (Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.487e-15
Identity = 58/198 (29.29%), Postives = 90/198 (45.45%), Query Frame = 1
Query:  151 GPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRP-HFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKGGIRFTINGFRYFN----LVLVTNVAGAGDILRVNVKGSRTG-WMSMSRNWGQNW 699
            G W +A AT+YG  + +G    GGACG  N+    Y   TA  +  +F +G  CG+C+E++C  +P  C     ++ +T  N+                P  P HFDL+   F  +A+          GI+ V +RRV C+   G +   +  +  N     VLV  VA  GDI+ + ++   +  W  M  +WG  W
Sbjct:   41 GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPE-CSGNPVTVYITDMNY---------------EPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIW 222          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXPB6_ORYSJ (Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXPB6 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.943e-15
Identity = 56/203 (27.59%), Postives = 93/203 (45.81%), Query Frame = 1
Query:  148 GGPWQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKG-GIRFTI--NGFRYFNLVLVTNVAGAGDILRVNVKGSRTG-------WMSMSRNWGQNW 699
            G  W  A AT+YG    +G    GGACG+ N+    +   T+  +  +F +G  CG+C++I+C  +P+ C     ++++T  N+ P                R HFDL+   F  +A+         +GI+ + +RRVPC   G  I F +       +  VLV      GD+++V++  S++        W  M  +WG  W
Sbjct:   41 GSGWLPARATWYGAPTGAGPDDNGGACGFKNVNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCNKDPS-CSGNIETVIITDMNYYP--------------VARYHFDLSGTAFGAMAKPGLNDKLRHSGIIDIQFRRVPCNYPGLKINFHVEEGSNPVYFAVLVEYEDLDGDVVQVDLMESKSAYGGATGVWTPMRESWGSIW 228          
BLAST of FC931219 vs. ExPASy Swiss-Prot
Match: EXPB2_ORYSJ (Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXPB2 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.314e-15
Identity = 57/199 (28.64%), Postives = 87/199 (43.72%), Query Frame = 1
Query:  157 WQSAHATFYGGSDASGT--MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANEPAWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAE-------YRAGIVPVSYRRVPCRKKG---GIRFTINGFRYFNLVLVTNVAGAGDILRVNVKGSRTG------WMSMSRNWGQNW 699
            W  A AT+YG  + +G    GGACG+ N     +   T+  +  LF +G  CGAC++I+C N P+ C     ++++T  N+ P                R HFDL+   F  +A          AGI+ + +RRVPC  +G              +  VLV      G +++++V  S         W  M R+WG  W
Sbjct:   31 WLPAKATWYGQPNGAGPDDNGGACGFKNTNQYPFMSMTSCGNEPLFQDGKGCGACYQIRCTNNPS-CSGQPRTVIITDMNYYP--------------VARYHFDLSGTAFGAMARPGLNDQLRHAGIIDIQFRRVPCYHRGLYVNFHVEAGSNPVYLAVLVEFANKDGTVVQLDVMESLPSGKPTRVWTPMRRSWGSIW 214          
The following BLAST results are available for this feature:
BLAST of FC931219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
EXPB4_ORYSJ1.757e-1629.56Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB10_MAIZE2.295e-1632.14Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2[more]
EXPB2_ARATH2.997e-1631.82Putative expansin-B2 OS=Arabidopsis thaliana GN=EX... [more]
EXPB9_ORYSJ3.914e-1630.61Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB8_ORYSJ3.914e-1628.57Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB11_MAIZE3.914e-1631.42Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1[more]
EXPB9_MAIZE1.487e-1529.29Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2[more]
EXPB1_MAIZE1.487e-1529.29Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2[more]
EXPB6_ORYSJ1.943e-1527.59Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB2_ORYSJ3.314e-1528.64Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionC34102G08EF PostHarvP1 Citrus clementina cDNA clone C34102G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931219 ID=FC931219; Name=FC931219; organism=Citrus clementina; type=EST; length=699bp
GAACCAAAACTAACTACACGGAGCTGTGTCTTCTTTGTGAGTGAAGAGAA
TAAAGAAACGATGGCGGTGGTGAATTGGGCTGGCGTTATCCTCTTTTTAG
TATGCTTAATGTGGGTGGCTGATGCAAGACTCCCTGGCGATTACTCCGGT
GGCCCATGGCAAAGCGCCCATGCCACCTTTTACGGCGGCTCTGACGCCTC
CGGTACCATGGGAGGAGCGTGCGGTTACGGTAACTTGTACAGCCAGGGCT
ACGGCGTGAACACAGCGGCGCTGAGCACGGCGCTGTTCAACAATGGCTTG
AGCTGCGGTGCTTGCTTTGAGATCAAGTGTGCAAACGAACCCGCGTGGTG
TCACTCCGGGAGCCCTTCCATTTTGGTTACCGCTACAAACTTTTGCCCGC
CCAATTACGCACTCCCAAGTGACAATGGCGGCTGGTGTAACCCTCCTCGC
CCTCATTTTGACCTCGCCATGCCCATGTTCCTCAAGATTGCTGAGTACCG
CGCCGGCATCGTCCCCGTCTCCTACCGCCGGGTACCATGCCGCAAGAAGG
GAGGAATCAGGTTCACAATAAACGGGTTCCGCTACTTCAACTTGGTTCTG
GTCACCAACGTGGCGGGTGCAGGGGATATCCTGAGGGTGAACGTGAAAGG
GTCAAGAACTGGCTGGATGAGCATGAGCCGTAACTGGGGCCAAAACTGG
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