FC931223

Overview
NameFC931223
Unique NameFC931223
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_CHLAT (Pyruvate dehydrogenase E1 component subunit beta OS=Chlorokybus atmophyticus GN=pdhB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.387e-27
Identity = 56/88 (63.64%), Postives = 73/88 (82.95%), Query Frame = 3
Query:  420 LFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            LFEAL++ ++EEM+R+  V ++GED+GHYGGSYKVT+GL  KYG  RV+DTPIAE SF G  +GAA TGL P+VEGMNM F+LLA+++
Sbjct:    6 LFEALQKAIDEEMEREKRVVLIGEDIGHYGGSYKVTQGLYGKYGKHRVIDTPIAEYSFVGAAVGAAATGLIPVVEGMNMAFILLAYSQ 93          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_ARATH (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.957e-21
Identity = 48/90 (53.33%), Postives = 63/90 (70.00%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFN 680
            E+ + +AL   ++EEM  DP V VMGE+VG Y G+YK+TKGL +KYG  RV DTPI E  FTG+G+GAA  GL+P+VE M   F + A +
Sbjct:   35 EMTVRDALNSAIDEEMSADPKVFVMGEEVGQYQGAYKITKGLLEKYGPERVYDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAID 124          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_ZYMMO (Pyruvate dehydrogenase E1 component subunit beta OS=Zymomonas mobilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.269e-20
Identity = 48/87 (55.17%), Postives = 64/87 (73.56%), Query Frame = 3
Query:  420 LFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFN 680
            L EALR+ + EEM RD  V VMGE+V  Y G+YKVT+GL  ++G  RV+DTPI+E  F+G+G+GAAM GLRP++E M M F + A +
Sbjct:  141 LREALRDAMAEEMRRDDRVFVMGEEVAEYQGAYKVTQGLLQEFGARRVVDTPISEYGFSGIGVGAAMEGLRPVIEFMTMNFSMQAID 227          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_RICFE (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia felis GN=pdhB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.164e-20
Identity = 47/90 (52.22%), Postives = 64/90 (71.11%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFN 680
            ++ + EALR+ ++EEM RD  V VMGE+V  Y G+YKVT+GL +++G  RV+DTPI E  F G+ +GAA  GLRPIVE M   F + AF+
Sbjct:    2 QITVREALRDAMQEEMIRDDKVFVMGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFD 91          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_DICDI (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.164e-20
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFN 680
            E+ + +A+   L+EE+ RD  V +MGE+V  Y G+YK+TKGL DKYG  R++DTPI E  F G+G+GAAM G RPI+E M   F + A +
Sbjct:   28 EVTVRDAINSALDEELARDEKVFIMGEEVAQYNGAYKITKGLFDKYGGDRIIDTPITEAGFAGIGVGAAMAGTRPIIEFMTFNFAMQAID 117          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_RAT (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Rattus norvegicus GN=Pdhb PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.691e-20
Identity = 44/91 (48.35%), Postives = 66/91 (72.53%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            +L + EA+ +G++EE++RD  V ++GE+V  Y G+YKV++GL  KYGD R++DTPI+E  F G+ +GAAM GLRPI E M   F + A ++
Sbjct:   32 QLTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQ 122          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_MOUSE (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.691e-20
Identity = 44/91 (48.35%), Postives = 66/91 (72.53%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            +L + EA+ +G++EE++RD  V ++GE+V  Y G+YKV++GL  KYGD R++DTPI+E  F G+ +GAAM GLRPI E M   F + A ++
Sbjct:   32 QLTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQ 122          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_RICTY (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia typhi GN=pdhB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.296e-20
Identity = 46/90 (51.11%), Postives = 64/90 (71.11%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFN 680
            ++ + EALR+ ++EEM RD  V V+GE+V  Y G+YKVT+GL +++G  RV+DTPI E  F G+ +GAA  GLRPIVE M   F + AF+
Sbjct:    2 QITVREALRDAMQEEMLRDDKVFVIGEEVAEYQGAYKVTQGLLEQFGSKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFD 91          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_RICPR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia prowazekii GN=pdhB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.296e-20
Identity = 46/90 (51.11%), Postives = 64/90 (71.11%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFN 680
            ++ + EALR+ ++EEM RD  V V+GE+V  Y G+YKVT+GL +++G  RV+DTPI E  F G+ +GAA  GLRPIVE M   F + AF+
Sbjct:    2 QITVREALRDAMQEEMLRDEKVFVIGEEVAEYQGAYKVTQGLLEQFGSKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFD 91          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_RICCN (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia conorii GN=pdhB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.296e-20
Identity = 46/90 (51.11%), Postives = 64/90 (71.11%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFN 680
            ++ + EALR+ ++EEM RD  V V+GE+V  Y G+YKVT+GL +++G  RV+DTPI E  F G+ +GAA  GLRPIVE M   F + AF+
Sbjct:    2 QITVREALRDAMQEEMIRDDKVFVIGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFD 91          
The following BLAST results are available for this feature:
BLAST of FC931223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ODPB_CHLAT2.387e-2763.64Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ARATH1.957e-2153.33Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ZYMMO1.269e-2055.17Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICFE2.164e-2052.22Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_DICDI2.164e-2050.00Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RAT3.691e-2048.35Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_MOUSE3.691e-2048.35Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RICTY6.296e-2051.11Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICPR6.296e-2051.11Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICCN6.296e-2051.11Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionC34102H02EF PostHarvP1 Citrus clementina cDNA clone C34102H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931223 ID=FC931223; Name=FC931223; organism=Citrus clementina; type=EST; length=736bp
AGCTCATAAACACACAAGCTTGCTTGCCTCAATTTCTCCGCCCATTTTTC
CAATATAAATTTTAAACAAACATTCAATTTCTTTTCGCCATTTCCTTCTT
TCAGTTAATAAGAAAAGCCTCTCGCAGTTCGTCAAATCGAATCGAATCGA
ATCCAATGGCTGCAATTTTCCAGGGCGTGGGAGCTGCAACGGCTTTATCA
CCGTCCAATTGCTTCGATTCTAAGAAGTCCCAGCTCTCAACTCGCAGATC
TCTCTCAGGACGGAAACCATGGTTCTTAGTTGTCAGATCTGATGGAAGCG
TCAACTTAGGCTCGAATCAAAGATCCCGGAGGACTCAACAGTTGATCACT
AATGCAGTTGCAACGAAGGCTGATTCGGCAGCTTCTACTTCGGCATCAAA
GCAAGGGCACGAACTTTTACTTTTTGAAGCTCTACGAGAAGGCTTGGAAG
AAGAAATGGACAGAGATCCACATGTATGTGTCATGGGTGAAGATGTTGGT
CACTATGGGGGTTCGTACAAAGTGACCAAAGGCCTGGCTGATAAGTATGG
GGATCTCAGGGTTCTTGACACCCCTATTGCTGAGAACTCTTTCACTGGTA
TGGGCATTGGGGCTGCCATGACTGGCTTGAGGCCAATTGTTGAAGGAATG
AACATGGGATTTCTTCTTTTAGCTTTCAACAGATCTCCAACACTGTGGTA
TGCTCCACTATACTTCTGGTGGGCAGTTTACATACC
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