FC931223

Overview
NameFC931223
Unique NameFC931223
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_RHIME (Pyruvate dehydrogenase E1 component subunit beta OS=Rhizobium meliloti GN=pdhB PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.222e-20
Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 3
Query:  426 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            EALR+ + EEM  +  V VMGE+V  Y G+YKVT+GL  ++G  RV+DTPI E+ F G+G+GAAMTGLRPIVE M   F + A ++
Sbjct:  142 EALRDAMAEEMRANEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVVDTPITEHGFAGVGVGAAMTGLRPIVEFMTFNFAMQAIDQ 227          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_BOVIN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.222e-20
Identity = 43/86 (50.00%), Postives = 63/86 (73.26%), Query Frame = 3
Query:  426 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            EA+ +G++EE++RD  V ++GE+V  Y G+YKV++GL  KYGD R++DTPI+E  F G+ +GAAM GLRPI E M   F + A ++
Sbjct:   37 EAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQ 122          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_YEAST (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=PDB1 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.074e-19
Identity = 44/85 (51.76%), Postives = 62/85 (72.94%), Query Frame = 3
Query:  426 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFN 680
            EAL   + EE+DRD  V ++GE+V  Y G+YKV+KGL D++G+ RV+DTPI E  FTG+ +GAA+ GL+PIVE M+  F + A +
Sbjct:   43 EALNSAMAEELDRDDDVFLIGEEVAQYNGAYKVSKGLLDRFGERRVVDTPITEYGFTGLAVGAALKGLKPIVEFMSFNFSMQAID 127          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_RICBR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia bellii (strain RML369-C) GN=pdhB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.074e-19
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFN 680
            ++ + EALR+ ++EEM RD  V VMGE+V  Y G+YKVT+GL +++G  RV+DTPI E  F G+ +GAA  GLRPIVE M   F + A +
Sbjct:    2 QITVREALRDAMQEEMIRDDKVFVMGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAMD 91          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_PEA (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.074e-19
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFN 680
            ++ + +AL   L+ EM  D  V +MGE+VG Y G+YKVTKGL +KYG  RVLDTPI E  FTG+G+GAA  GL+P+VE M   F + A +
Sbjct:   25 QMTVRDALNSALDVEMSADSKVFLMGEEVGEYQGAYKVTKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAID 114          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_PONAB (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pongo abelii GN=PDHB PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.832e-19
Identity = 42/86 (48.84%), Postives = 63/86 (73.26%), Query Frame = 3
Query:  426 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            +A+ +G++EE++RD  V ++GE+V  Y G+YKV++GL  KYGD R++DTPI+E  F G+ +GAAM GLRPI E M   F + A ++
Sbjct:   37 DAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQ 122          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_HUMAN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Homo sapiens GN=PDHB PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.832e-19
Identity = 42/86 (48.84%), Postives = 63/86 (73.26%), Query Frame = 3
Query:  426 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            +A+ +G++EE++RD  V ++GE+V  Y G+YKV++GL  KYGD R++DTPI+E  F G+ +GAAM GLRPI E M   F + A ++
Sbjct:   37 DAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQ 122          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_SCHPO (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=pdb1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.961e-19
Identity = 44/90 (48.89%), Postives = 60/90 (66.67%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFN 680
            E+ + +AL   +EEEM RD  V ++GE+V  Y G+YK+++GL DK+G  RV+DTPI E  FTG+  GAA  GLRPI E M   F + A +
Sbjct:   37 EMTVRDALNSAMEEEMKRDDRVFLIGEEVAQYNGAYKISRGLLDKFGPKRVIDTPITEMGFTGLATGAAFAGLRPICEFMTFNFSMQAID 126          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_CAEEL (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.893e-18
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 3
Query:  426 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            +AL + ++EE+ RD  V +MGE+V  Y G+YK++KGL  K+GD RV+DTPI E  F G+ +GAA  GLRPI E M   F + A ++
Sbjct:   29 DALNQAMDEEIKRDDRVFLMGEEVAQYDGAYKISKGLWKKHGDKRVVDTPITEMGFAGIAVGAAFAGLRPICEFMTFNFSMQAIDQ 114          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODBB_BACSU (2-oxoisovalerate dehydrogenase subunit beta OS=Bacillus subtilis GN=bfmBAB PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.005e-17
Identity = 42/86 (48.84%), Postives = 62/86 (72.09%), Query Frame = 3
Query:  426 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            +A+   ++EEM+RD  V V+GEDVG  GG +K T GL +++G+ RV+DTP+AE++  G+GIGAAM G+RPI E     F++ A N+
Sbjct:    8 DAINLAMKEEMERDSRVFVLGEDVGRKGGVFKATAGLYEQFGEERVMDTPLAESAIAGVGIGAAMYGMRPIAEMQFADFIMPAVNQ 93          
The following BLAST results are available for this feature:
BLAST of FC931223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ODPB_RHIME8.222e-2054.65Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_BOVIN8.222e-2050.00Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_YEAST1.074e-1951.76Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RICBR1.074e-1951.11Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PEA1.074e-1952.22Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_PONAB1.832e-1948.84Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_HUMAN1.832e-1948.84Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_SCHPO6.961e-1948.89Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CAEEL5.893e-1848.84Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODBB_BACSU1.005e-1748.842-oxoisovalerate dehydrogenase subunit beta OS=Bac... [more]

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Properties
Property NameValue
Genbank descriptionC34102H02EF PostHarvP1 Citrus clementina cDNA clone C34102H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931223 ID=FC931223; Name=FC931223; organism=Citrus clementina; type=EST; length=736bp
AGCTCATAAACACACAAGCTTGCTTGCCTCAATTTCTCCGCCCATTTTTC
CAATATAAATTTTAAACAAACATTCAATTTCTTTTCGCCATTTCCTTCTT
TCAGTTAATAAGAAAAGCCTCTCGCAGTTCGTCAAATCGAATCGAATCGA
ATCCAATGGCTGCAATTTTCCAGGGCGTGGGAGCTGCAACGGCTTTATCA
CCGTCCAATTGCTTCGATTCTAAGAAGTCCCAGCTCTCAACTCGCAGATC
TCTCTCAGGACGGAAACCATGGTTCTTAGTTGTCAGATCTGATGGAAGCG
TCAACTTAGGCTCGAATCAAAGATCCCGGAGGACTCAACAGTTGATCACT
AATGCAGTTGCAACGAAGGCTGATTCGGCAGCTTCTACTTCGGCATCAAA
GCAAGGGCACGAACTTTTACTTTTTGAAGCTCTACGAGAAGGCTTGGAAG
AAGAAATGGACAGAGATCCACATGTATGTGTCATGGGTGAAGATGTTGGT
CACTATGGGGGTTCGTACAAAGTGACCAAAGGCCTGGCTGATAAGTATGG
GGATCTCAGGGTTCTTGACACCCCTATTGCTGAGAACTCTTTCACTGGTA
TGGGCATTGGGGCTGCCATGACTGGCTTGAGGCCAATTGTTGAAGGAATG
AACATGGGATTTCTTCTTTTAGCTTTCAACAGATCTCCAACACTGTGGTA
TGCTCCACTATACTTCTGGTGGGCAGTTTACATACC
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