FC931223

Overview
NameFC931223
Unique NameFC931223
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_ASCSU (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.313e-17
Identity = 42/79 (53.16%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  426 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGF 662
            +AL   L+EE+ RD  V ++GE+V  Y G+YK++KGL  KYGD R+ DTPI E +  G+ +GAAM GLRPI E M+M F
Sbjct:   38 DALNAALDEEIKRDDRVFLIGEEVAQYDGAYKISKGLWKKYGDGRIWDTPITEMAIAGLSVGAAMNGLRPICEFMSMNF 116          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_MYCGE (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma genitalium GN=pdhB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.515e-16
Identity = 47/106 (44.34%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  426 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAF-----------NRSPTLWYAPL 710
            EAL   ++  ++RD +V + G+D G  GG ++ TKGL  KYG  RV D PIAENS  G+G+GAA+ GL+PIVE    GF   A            NRS  ++ APL
Sbjct:   10 EALNNAMDLALERDQNVVLYGQDAGFEGGVFRATKGLQQKYGSERVWDCPIAENSMAGIGVGAAIGGLKPIVEIQFSGFSFPAMFQIFVHAARIRNRSRGVYTAPL 115          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODBB_THET8 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0230 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 5.832e-16
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 3
Query:  414 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            + + +AL   L+EEM +DP V V+GEDVG  GG + VT+GL  KYG  RV+DTP++E +  G  +G A  GLRP+ E     ++   F++
Sbjct:    4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIFPGFDQ 93          

HSP 2 Score: 20.7866 bits (42), Expect = 5.832e-16
Identity = 8/10 (80.00%), Postives = 8/10 (80.00%), Query Frame = 1
Query:  703 LHYTSGGQFT 732
            L Y SGGQFT
Sbjct:  101 LRYRSGGQFT 110          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODBB_THET2 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1756 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 5.832e-16
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 3
Query:  414 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            + + +AL   L+EEM +DP V V+GEDVG  GG + VT+GL  KYG  RV+DTP++E +  G  +G A  GLRP+ E     ++   F++
Sbjct:    4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIFPGFDQ 93          

HSP 2 Score: 20.7866 bits (42), Expect = 5.832e-16
Identity = 8/10 (80.00%), Postives = 8/10 (80.00%), Query Frame = 1
Query:  703 LHYTSGGQFT 732
            L Y SGGQFT
Sbjct:  101 LRYRSGGQFT 110          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_STAES (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15
Identity = 37/90 (41.11%), Postives = 61/90 (67.78%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFN 680
            ++ + +A+ + L+ E+ RD  V V GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+TG RP++E   +GF+   F+
Sbjct:    3 QMTMVQAINDALKSELKRDEDVLVFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLALGLAVTGFRPVMEIQFLGFVYEVFD 92          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_STAEQ (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15
Identity = 37/90 (41.11%), Postives = 61/90 (67.78%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFN 680
            ++ + +A+ + L+ E+ RD  V V GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+TG RP++E   +GF+   F+
Sbjct:    3 QMTMVQAINDALKSELKRDEDVLVFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLALGLAVTGFRPVMEIQFLGFVYEVFD 92          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_ACHLA (Pyruvate dehydrogenase E1 component subunit beta OS=Acholeplasma laidlawii GN=pdhB PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = 3
Query:  414 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFL 665
            + L EA+ + +++ M++D  + V GED G  GG ++VT GL  KYG+ RV DTPIAE++  G  +G A+ GL+PI E    GF+
Sbjct:    4 ITLLEAINQAIDQAMEKDESIVVFGEDAGFEGGVFRVTAGLQKKYGETRVFDTPIAESAIVGSAVGMAINGLKPIAEIQFDGFI 87          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_LEIXX (Pyruvate dehydrogenase E1 component subunit beta OS=Leifsonia xyli subsp. xyli GN=pdhB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.737e-15
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 3
Query:  414 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNRSPT 692
            L + +AL  GL + +  DP V ++GEDVG  GG ++VT+GL  ++G  RV+DTP+AE    G  IG AM G RP+VE    GF+   F++  T
Sbjct:   17 LPMVKALNAGLRQALVADPKVLILGEDVGPLGGVFRVTEGLQSEFGASRVVDTPLAEAGIVGTAIGLAMRGYRPVVEIQFNGFVFPGFDQITT 109          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_MYCPN (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma pneumoniae GN=pdhB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.669e-15
Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = 3
Query:  426 EALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGF 662
            EAL   ++  ++RDP+V + G+D G  GG ++ TKGL  KYG+ RV D PIAE +  G+G+GAA+ GL+PIVE    GF
Sbjct:   11 EALGNAMDLALERDPNVVLYGQDAGFEGGVFRATKGLQKKYGEERVWDCPIAEAAMAGIGVGAAIGGLKPIVEIQFSGF 89          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_STAAW (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MW2) GN=pdhB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 34/90 (37.78%), Postives = 59/90 (65.56%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFN 680
            ++ + +A+ + L+ E+  D  V + GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E   +GF+   F+
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFD 92          
The following BLAST results are available for this feature:
BLAST of FC931223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ODPB_ASCSU1.313e-1753.16Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_MYCGE5.515e-1644.34Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_THET85.832e-1643.332-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODBB_THET25.832e-1643.332-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODPB_STAES1.605e-1541.11Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAEQ1.605e-1541.11Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ACHLA1.605e-1544.05Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_LEIXX2.737e-1544.09Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MYCPN4.669e-1549.37Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAW3.952e-1437.78Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionC34102H02EF PostHarvP1 Citrus clementina cDNA clone C34102H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931223 ID=FC931223; Name=FC931223; organism=Citrus clementina; type=EST; length=736bp
AGCTCATAAACACACAAGCTTGCTTGCCTCAATTTCTCCGCCCATTTTTC
CAATATAAATTTTAAACAAACATTCAATTTCTTTTCGCCATTTCCTTCTT
TCAGTTAATAAGAAAAGCCTCTCGCAGTTCGTCAAATCGAATCGAATCGA
ATCCAATGGCTGCAATTTTCCAGGGCGTGGGAGCTGCAACGGCTTTATCA
CCGTCCAATTGCTTCGATTCTAAGAAGTCCCAGCTCTCAACTCGCAGATC
TCTCTCAGGACGGAAACCATGGTTCTTAGTTGTCAGATCTGATGGAAGCG
TCAACTTAGGCTCGAATCAAAGATCCCGGAGGACTCAACAGTTGATCACT
AATGCAGTTGCAACGAAGGCTGATTCGGCAGCTTCTACTTCGGCATCAAA
GCAAGGGCACGAACTTTTACTTTTTGAAGCTCTACGAGAAGGCTTGGAAG
AAGAAATGGACAGAGATCCACATGTATGTGTCATGGGTGAAGATGTTGGT
CACTATGGGGGTTCGTACAAAGTGACCAAAGGCCTGGCTGATAAGTATGG
GGATCTCAGGGTTCTTGACACCCCTATTGCTGAGAACTCTTTCACTGGTA
TGGGCATTGGGGCTGCCATGACTGGCTTGAGGCCAATTGTTGAAGGAATG
AACATGGGATTTCTTCTTTTAGCTTTCAACAGATCTCCAACACTGTGGTA
TGCTCCACTATACTTCTGGTGGGCAGTTTACATACC
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