FC931223

Overview
NameFC931223
Unique NameFC931223
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931223_ssr135 microsatellite FC931223_ssr135:135..149. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15198 contig Ccv1_Contig15198:44..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_STAAU (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus GN=pdhB PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 34/90 (37.78%), Postives = 59/90 (65.56%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFN 680
            ++ + +A+ + L+ E+  D  V + GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E   +GF+   F+
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFD 92          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_STAAS (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MSSA476) GN=pdhB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 34/90 (37.78%), Postives = 59/90 (65.56%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFN 680
            ++ + +A+ + L+ E+  D  V + GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E   +GF+   F+
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFD 92          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_STAAR (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MRSA252) GN=pdhB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 34/90 (37.78%), Postives = 59/90 (65.56%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFN 680
            ++ + +A+ + L+ E+  D  V + GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E   +GF+   F+
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFD 92          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_STAAN (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain N315) GN=pdhB PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 34/90 (37.78%), Postives = 59/90 (65.56%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFN 680
            ++ + +A+ + L+ E+  D  V + GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E   +GF+   F+
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFD 92          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_STAAM (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhB PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 34/90 (37.78%), Postives = 59/90 (65.56%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFN 680
            ++ + +A+ + L+ E+  D  V + GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E   +GF+   F+
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFD 92          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_STAAC (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain COL) GN=pdhB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 34/90 (37.78%), Postives = 59/90 (65.56%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFN 680
            ++ + +A+ + L+ E+  D  V + GEDVG  GG ++VT+GL  ++G+ RV DTP+AE+   G+ +G A+ G RP++E   +GF+   F+
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFD 92          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODBB_PSEPU (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas putida GN=bkdA2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13
Identity = 33/77 (42.86%), Postives = 51/77 (66.23%), Query Frame = 3
Query:  414 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 644
            + + +ALR  ++  ++RD +V V G+DVG++GG ++ T+GL  KYG  RV D PI+E+   G  +G    GLRP+VE
Sbjct:    6 MTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVE 82          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_BACST (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus stearothermophilus GN=pdhB PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.502e-13
Identity = 34/85 (40.00%), Postives = 55/85 (64.71%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFL 665
            ++ + +A+ + L  E+  DP+V + GEDVG  GG ++ T+GL  ++G+ RV DTP+AE+   G+ IG A+ G RP+ E    GF+
Sbjct:    3 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQFFGFV 87          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODBB_PSEAE (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas aeruginosa GN=bkdA2 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.562e-13
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 3
Query:  414 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVE 644
            + + +ALR  ++  ++RD  V V G+DVG++GG ++ T+GL  KYG  RV D PI+E+   G  +G    GLRP+VE
Sbjct:   17 MTMIQALRSAMDIMLERDDDVVVFGQDVGYFGGVFRCTEGLQKKYGTSRVFDAPISESGIIGAAVGMGAYGLRPVVE 93          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ACOB_RALEH (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=acoB PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.370e-13
Identity = 40/95 (42.11%), Postives = 61/95 (64.21%), Query Frame = 3
Query:  429 ALREGLEEEMDRDPHVCVMGEDV----------GHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            A+ E +++EM RDP V ++GED+            +GG   VTKGL  K+GD R+LDTP++E+++ G  IGAA  G+RPI E M + F+ + F++
Sbjct:   10 AINEAIDQEMTRDPSVIMLGEDIVGGAGADGEKDAWGGVLGVTKGLYAKHGD-RLLDTPLSESAYVGAAIGAAACGMRPIAELMFIDFMGVCFDQ 103          
The following BLAST results are available for this feature:
BLAST of FC931223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ODPB_STAAU3.952e-1437.78Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAS3.952e-1437.78Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAR3.952e-1437.78Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAN3.952e-1437.78Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAM3.952e-1437.78Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAC3.952e-1437.78Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_PSEPU1.150e-1342.862-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]
ODPB_BACST1.502e-1340.00Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_PSEAE2.562e-1342.862-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]
ACOB_RALEH4.370e-1342.11Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]

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Properties
Property NameValue
Genbank descriptionC34102H02EF PostHarvP1 Citrus clementina cDNA clone C34102H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931223 ID=FC931223; Name=FC931223; organism=Citrus clementina; type=EST; length=736bp
AGCTCATAAACACACAAGCTTGCTTGCCTCAATTTCTCCGCCCATTTTTC
CAATATAAATTTTAAACAAACATTCAATTTCTTTTCGCCATTTCCTTCTT
TCAGTTAATAAGAAAAGCCTCTCGCAGTTCGTCAAATCGAATCGAATCGA
ATCCAATGGCTGCAATTTTCCAGGGCGTGGGAGCTGCAACGGCTTTATCA
CCGTCCAATTGCTTCGATTCTAAGAAGTCCCAGCTCTCAACTCGCAGATC
TCTCTCAGGACGGAAACCATGGTTCTTAGTTGTCAGATCTGATGGAAGCG
TCAACTTAGGCTCGAATCAAAGATCCCGGAGGACTCAACAGTTGATCACT
AATGCAGTTGCAACGAAGGCTGATTCGGCAGCTTCTACTTCGGCATCAAA
GCAAGGGCACGAACTTTTACTTTTTGAAGCTCTACGAGAAGGCTTGGAAG
AAGAAATGGACAGAGATCCACATGTATGTGTCATGGGTGAAGATGTTGGT
CACTATGGGGGTTCGTACAAAGTGACCAAAGGCCTGGCTGATAAGTATGG
GGATCTCAGGGTTCTTGACACCCCTATTGCTGAGAACTCTTTCACTGGTA
TGGGCATTGGGGCTGCCATGACTGGCTTGAGGCCAATTGTTGAAGGAATG
AACATGGGATTTCTTCTTTTAGCTTTCAACAGATCTCCAACACTGTGGTA
TGCTCCACTATACTTCTGGTGGGCAGTTTACATACC
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