FC931223

Overview
NameFC931223
Unique NameFC931223
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODPB_BACSU (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus subtilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.707e-13
Identity = 32/85 (37.65%), Postives = 54/85 (63.53%), Query Frame = 3
Query:  411 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFL 665
            ++ + +A+ + L  E+  D +V V GEDVG  GG ++ T+GL  ++G+ RV DTP+AE+   G+ +G  + G RP++E    GF+
Sbjct:    3 QMTMIQAITDALRTELKNDENVLVFGEDVGVNGGVFRATEGLQKEFGEDRVFDTPLAESGIGGLALGLGLNGFRPVMEIQFFGFV 87          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODBB_BOVIN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.832e-12
Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = 3
Query:  402 QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            Q  ++ LF+A+   L+  + +DP   + GEDV  +GG ++ T GL DKYG  RV +TP+ E    G GIG A+TG   I E     ++  AF++
Sbjct:   67 QTQKMNLFQAVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQ 159          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODBB_DICDI (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Dictyostelium discoideum GN=bkdB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.310e-12
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 3
Query:  420 LFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            LF+A+  G++  M +D    V GEDVG +GG ++ T GL DKYG  RV +TP+ E    G  IG A  G  PI E     ++  AF++
Sbjct:   51 LFQAINNGMDIAMQKDSKAVVFGEDVG-FGGVFRCTVGLRDKYGASRVFNTPLCEQGIAGFAIGLAAQGATPIAEIQFADYIFPAFDQ 137          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODBB_RAT (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 35/94 (37.23%), Postives = 54/94 (57.45%), Query Frame = 3
Query:  402 QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            Q  ++ LF+++   L+  + +DP   + GEDV  +GG ++ T GL DKYG  RV +TP+ E    G GIG A+TG   I E     ++  AF++
Sbjct:   65 QTQKMNLFQSITSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQ 157          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODBB_MOUSE (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus GN=Bckdhb PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 35/94 (37.23%), Postives = 54/94 (57.45%), Query Frame = 3
Query:  402 QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            Q  ++ LF+++   L+  + +DP   + GEDV  +GG ++ T GL DKYG  RV +TP+ E    G GIG A+TG   I E     ++  AF++
Sbjct:   65 QTQKMNLFQSITSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQ 157          
BLAST of FC931223 vs. ExPASy Swiss-Prot
Match: ODBB_HUMAN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 35/94 (37.23%), Postives = 54/94 (57.45%), Query Frame = 3
Query:  402 QGHELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNR 683
            Q  ++ LF+++   L+  + +DP   + GEDV  +GG ++ T GL DKYG  RV +TP+ E    G GIG A+TG   I E     ++  AF++
Sbjct:   67 QTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQ 159          
The following BLAST results are available for this feature:
BLAST of FC931223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ODPB_BACSU5.707e-1337.65Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_BOVIN4.832e-1238.302-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_DICDI6.310e-1240.912-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_RAT8.241e-1237.232-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_MOUSE8.241e-1237.232-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_HUMAN1.076e-1137.232-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]

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Properties
Property NameValue
Genbank descriptionC34102H02EF PostHarvP1 Citrus clementina cDNA clone C34102H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931223 ID=FC931223; Name=FC931223; organism=Citrus clementina; type=EST; length=736bp
AGCTCATAAACACACAAGCTTGCTTGCCTCAATTTCTCCGCCCATTTTTC
CAATATAAATTTTAAACAAACATTCAATTTCTTTTCGCCATTTCCTTCTT
TCAGTTAATAAGAAAAGCCTCTCGCAGTTCGTCAAATCGAATCGAATCGA
ATCCAATGGCTGCAATTTTCCAGGGCGTGGGAGCTGCAACGGCTTTATCA
CCGTCCAATTGCTTCGATTCTAAGAAGTCCCAGCTCTCAACTCGCAGATC
TCTCTCAGGACGGAAACCATGGTTCTTAGTTGTCAGATCTGATGGAAGCG
TCAACTTAGGCTCGAATCAAAGATCCCGGAGGACTCAACAGTTGATCACT
AATGCAGTTGCAACGAAGGCTGATTCGGCAGCTTCTACTTCGGCATCAAA
GCAAGGGCACGAACTTTTACTTTTTGAAGCTCTACGAGAAGGCTTGGAAG
AAGAAATGGACAGAGATCCACATGTATGTGTCATGGGTGAAGATGTTGGT
CACTATGGGGGTTCGTACAAAGTGACCAAAGGCCTGGCTGATAAGTATGG
GGATCTCAGGGTTCTTGACACCCCTATTGCTGAGAACTCTTTCACTGGTA
TGGGCATTGGGGCTGCCATGACTGGCTTGAGGCCAATTGTTGAAGGAATG
AACATGGGATTTCTTCTTTTAGCTTTCAACAGATCTCCAACACTGTGGTA
TGCTCCACTATACTTCTGGTGGGCAGTTTACATACC
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