FC931228

Overview
NameFC931228
Unique NameFC931228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19_PIG (40S ribosomal protein S19 (Fragment) OS=Sus scrofa GN=RPS19 PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 2.975e-34
Identity = 71/136 (52.21%), Postives = 95/136 (69.85%), Query Frame = 2
Query:   62 MGGVTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            M GVTV+DV+ Q+F+ A +AFLK+ GKL +P WVDTVK +   EL P D +WFY RAA+ ARH+Y+R   GVG + K +G  +  G  P+H    S SV R+ LQALE + ++E D++ GGR++T  GQRDLDRIA
Sbjct:    1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAXHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQD-GGRKLTPQGQRDLDRIA 135          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19_HUMAN (40S ribosomal protein S19 OS=Homo sapiens GN=RPS19 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.975e-34
Identity = 71/136 (52.21%), Postives = 95/136 (69.85%), Query Frame = 2
Query:   62 MGGVTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            M GVTV+DV+ Q+F+ A +AFLK+ GKL +P WVDTVK +   EL P D +WFY RAA+ ARH+Y+R   GVG + K +G  +  G  P+H    S SV R+ LQALE + ++E D++ GGR++T  GQRDLDRIA
Sbjct:    1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQD-GGRKLTPQGQRDLDRIA 135          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19_BOVIN (40S ribosomal protein S19 OS=Bos taurus GN=RPS19 PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 2.975e-34
Identity = 71/136 (52.21%), Postives = 95/136 (69.85%), Query Frame = 2
Query:   62 MGGVTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            M GVTV+DV+ Q+F+ A +AFLK+ GKL +P WVDTVK +   EL P D +WFY RAA+ ARH+Y+R   GVG + K +G  +  G  P+H    S SV R+ LQALE + ++E D++ GGR++T  GQRDLDRIA
Sbjct:    1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQD-GGRKLTPQGQRDLDRIA 135          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19_MYXGL (40S ribosomal protein S19 OS=Myxine glutinosa GN=rps19 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.074e-34
Identity = 71/140 (50.71%), Postives = 94/140 (67.14%), Query Frame = 2
Query:   62 MGGVTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIAKTTV 481
            M G TV+DV+ Q+F+ A +AF K+ GKL  P WVDTVK     EL P D DW+Y+R A+ ARH+YMR  VGVG + K +G  +  G+RP+H+   S +V RK LQ+LE + ++E D   GGRR+T  GQRD+DRIA   V
Sbjct:    1 MPGYTVKDVNQQEFVKALAAFFKKSGKLKKPDWVDTVKLGKHKELAPFDIDWYYIRTASVARHLYMRGGVGVGAMTKIYGGRQRNGTRPSHYSRGSRNVARKVLQSLEMLKMVEKD-PNGGRRLTSIGQRDMDRIAGQVV 139          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS191_ARATH (40S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.627e-34
Identity = 68/134 (50.75%), Postives = 90/134 (67.16%), Query Frame = 2
Query:   68 GVTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            G TV+DV    F+ AY++ LKR GK+ +P W D VKT    EL P D DW+Y+RAA+ AR +Y+R  +GVG  R+ +G +K  GSRP H   +SG + R  LQ LE + ++E D  KGGRRIT SGQRDLD++A
Sbjct:    4 GKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELD-TKGGRRITSSGQRDLDQVA 136          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS192_ARATH (40S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.656e-34
Identity = 69/134 (51.49%), Postives = 90/134 (67.16%), Query Frame = 2
Query:   68 GVTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            G TV+DV    F+ AY++ LKR GK+ +P W D VKT    EL P D DW+Y+RAA+ AR IY+R  +GVG  R+ +G +K  GSRP H   +SG + R  LQ LE + ++E D  KGGRRIT SGQRDLD++A
Sbjct:    4 GKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELD-TKGGRRITSSGQRDLDQVA 136          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19_GILMI (40S ribosomal protein S19 OS=Gillichthys mirabilis GN=rps19 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.130e-33
Identity = 70/136 (51.47%), Postives = 92/136 (67.65%), Query Frame = 2
Query:   62 MGGVTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            M GVTV+DV+ Q+F+ A +AFLK+ GKL +P WVD VK     EL P D +WFY+RAA+  RH+Y+R   GVG + K +G  +  G  PAH+ + S +V RK LQALE + ++E D   GGRR+T  G RDLDRIA
Sbjct:    1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPDWVDLVKLGRHKELAPSDENWFYIRAASTVRHLYLRGGAGVGSMTKIYGGRQRNGVCPAHYSEGSKNVARKVLQALELLKMIEKD-PNGGRRLTAQGTRDLDRIA 135          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS193_ARATH (40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.518e-33
Identity = 67/134 (50.00%), Postives = 91/134 (67.91%), Query Frame = 2
Query:   68 GVTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            G TV+DV   +F+ AY+A LKR GK+ +P W D VKT    EL P D DW+Y+RAA+ AR +Y+R  +GVG  R+ +G +K  GSRP H   +SG V R  LQ L+ + +++ D  KGGR+IT SGQRDLD++A
Sbjct:    4 GKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLD-TKGGRKITSSGQRDLDQVA 136          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19_PAGMA (40S ribosomal protein S19 OS=Pagrus major GN=rps19 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.289e-33
Identity = 70/136 (51.47%), Postives = 92/136 (67.65%), Query Frame = 2
Query:   62 MGGVTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            M GVTV+DV+ Q+F+ A +AFLK+ GKL +P WVD VK     EL P D +WFY+R+A+  RH+Y+R   GVG + K +GS +  G  PAH+   S +V RK LQALE + ++E D   GGRR+T  G RDLDRIA
Sbjct:    1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPDWVDLVKLGKHKELAPSDENWFYIRSASTVRHLYLRGGAGVGSMTKIYGSRQRNGVCPAHYSVGSKNVARKVLQALELLKMIEKD-PNGGRRLTAQGTRDLDRIA 135          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19_ICTPU (40S ribosomal protein S19 OS=Ictalurus punctatus GN=rps19 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.296e-33
Identity = 71/135 (52.59%), Postives = 92/135 (68.15%), Query Frame = 2
Query:   65 GGVTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            GGVTV+DV+ Q+F+ A +AFLK+ GKL +P WVD VK +   EL P D +WFY+RAA+  RH+Y+R  VGVG + K +G  K  G  P+H    S +V RK LQALE + ++E D   GGRR+T  G RDLDRIA
Sbjct:    4 GGVTVKDVNQQEFVRALAAFLKKSGKLKVPDWVDIVKLAKHKELAPCDDNWFYIRAASTVRHLYLRGGVGVGSMIKIYGGRKRNGVCPSHFSVGSKNVARKVLQALEALKMVEKD-PNGGRRLTPQGTRDLDRIA 137          
The following BLAST results are available for this feature:
BLAST of FC931228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RS19_PIG2.975e-3452.2140S ribosomal protein S19 (Fragment) OS=Sus scrofa... [more]
RS19_HUMAN2.975e-3452.2140S ribosomal protein S19 OS=Homo sapiens GN=RPS19... [more]
RS19_BOVIN2.975e-3452.2140S ribosomal protein S19 OS=Bos taurus GN=RPS19 P... [more]
RS19_MYXGL5.074e-3450.7140S ribosomal protein S19 OS=Myxine glutinosa GN=r... [more]
RS191_ARATH6.627e-3450.7540S ribosomal protein S19-1 OS=Arabidopsis thalian... [more]
RS192_ARATH8.656e-3451.4940S ribosomal protein S19-2 OS=Arabidopsis thalian... [more]
RS19_GILMI1.130e-3351.4740S ribosomal protein S19 OS=Gillichthys mirabilis... [more]
RS193_ARATH2.518e-3350.0040S ribosomal protein S19-3 OS=Arabidopsis thalian... [more]
RS19_PAGMA3.289e-3351.4740S ribosomal protein S19 OS=Pagrus major GN=rps19... [more]
RS19_ICTPU4.296e-3352.5940S ribosomal protein S19 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionC34102H07EF PostHarvP1 Citrus clementina cDNA clone C34102H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931228 ID=FC931228; Name=FC931228; organism=Citrus clementina; type=EST; length=676bp
GGACGCCCAACGCCTCTCTCTCTCTAATCCCTACCCTTCGACCCCTCGAC
AAGTCGCCAAAATGGGTGGTGTTACCGTTCGCGATGTGGACGCGCAGAAG
TTCATCTCTGCCTACTCTGCTTTCCTGAAGCGTCAGGGAAAGCTCCCCAT
CCCCGGATGGGTTGACACTGTCAAGACCTCTGCTTCCAACGAGCTTCCTC
CCCAGGATGCTGACTGGTTCTACGTCCGCGCCGCCGCCTGTGCCCGTCAC
ATCTACATGCGCAAGACCGTCGGTGTCGGTCGTCTTCGCAAGGCCCACGG
CTCCACCAAGAACCGTGGCTCTCGCCCCGCCCACCACGTCGATGCCTCCG
GCTCCGTCGACCGCAAGGCCCTCCAGGCTCTTGAGAAGATCGGTGTCCTC
GAGACCGATGAGGAGAAGGGTGGTCGCCGCATCACTCAGAGCGGTCAGCG
TGATTTGGACCGTATTGCCAAGACCACCGTCGACGAGGAGGAGGAGTCTG
ATGAGGAATAAACGTATCGCAACGATGGGCTTTTAATAGTTCGGGGATAA
GTCGTTTGTTTTTGTGGTTTTGTCTTCGCTACGGCGGCAGGATTTTGGAA
ATGACGGCACATAAATAAAAATTCGGAGCTTGCGGTCCCGTGCGCGACTT
TACGTTTGATTCTTTTTTTTCTTGTT
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