FC931228

Overview
NameFC931228
Unique NameFC931228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931228_ssr14 microsatellite FC931228_ssr14:14..25. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931228_ssr485 microsatellite FC931228_ssr485:485..496. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19_AEQIR (40S ribosomal protein S19 OS=Aequipecten irradians GN=RPS19 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.296e-33
Identity = 68/134 (50.75%), Postives = 90/134 (67.16%), Query Frame = 2
Query:   68 GVTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            G++V+DVD+  F  A +AFLK+ GK+ IP W   +K S  NEL P D DWFY RAA+  RH+Y+R   GVG L K +G  K  G+ P+H+  +SGSV R+ LQALE   ++E D   GGR++T  GQ+DLDRIA
Sbjct:    2 GISVKDVDSHTFTKALAAFLKKSGKMKIPEWATIIKLSKFNELSPYDEDWFYTRAASICRHLYIRSPAGVGALTKIYGDRKRNGTVPSHYCRSSGSVARRVLQALETQKLVEKD-ANGGRKLTSQGQKDLDRIA 134          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19_MYAAR (40S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.250e-32
Identity = 61/134 (45.52%), Postives = 92/134 (68.66%), Query Frame = 2
Query:   68 GVTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            G++V+DV + +F  A++AFLK+ GK+ +P W D VKT    EL P + DW+++RAA+  RH+Y+R   G+G   K +G  + RG+ P+H   A+GS+ R+ LQ+LE + ++E D   GGRR+T  G+RDLDRIA
Sbjct:    2 GISVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHLYIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKD-PNGGRRLTSQGRRDLDRIA 134          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19S_ASCSU (40S ribosomal protein S19S OS=Ascaris suum GN=RPS19S PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.583e-30
Identity = 63/132 (47.73%), Postives = 85/132 (64.39%), Query Frame = 2
Query:   74 TVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            +V+DVD  + +   + FLK+ GK+ +P W D VK   + EL P D+DW+YVR A+ AR +Y+R   GVG LR+ +G  K RG  P H   ASGSV RKALQ LE I  +E   +  GR +T+ G++DLDRIA
Sbjct:    6 SVKDVDQHEIVRYIAGFLKKSGKVKVPEWSDLVKLGITKELAPVDSDWYYVRTASVARRLYIRSPTGVGALRRVYGGNKRRGVTPNHFARASGSVIRKALQTLEAIKWVEKHPDGNGRILTKQGRKDLDRIA 137          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19_DICDI (40S ribosomal protein S19 OS=Dictyostelium discoideum GN=rps19 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.689e-29
Identity = 63/134 (47.01%), Postives = 84/134 (62.69%), Query Frame = 2
Query:   71 VTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIAK 472
            VT++DV  Q+FI+ Y+ FLK+ G++ IP W D  KT+   ELPP + DW Y R A  AR +Y+R   GV   R+  G  +  G RP H  D +G   R  L+ L+ + V+ETD  KGGR IT +G+RDLDRIAK
Sbjct:    6 VTLKDVCPQEFIATYARFLKKTGRVQIPKWNDIAKTATYRELPPTNPDWIYYRIATLARKVYIRGGDGVATYRRVFGGNRRNGVRPNHFADVNGGNIRYCLKQLQNLKVIETDAVKGGRTITATGRRDLDRIAK 139          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19A_DROME (40S ribosomal protein S19a OS=Drosophila melanogaster GN=RpS19a PE=2 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 2.881e-29
Identity = 66/140 (47.14%), Postives = 85/140 (60.71%), Query Frame = 2
Query:   62 MGGVTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIAKTTV 481
            M GVTV+D+D      A + FLK+ GKL +P  +D VKT+   EL P D DWFYVR A+  RH+Y R   GVG + K +G  K  G  P+H   A+    RKALQALE   ++E   + GGR+++  GQRDLDRIA   V
Sbjct:    1 MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASILRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPD-GGRKLSSIGQRDLDRIANQIV 139          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19G_ASCSU (40S ribosomal protein S19G OS=Ascaris suum GN=RPS19G PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.211e-27
Identity = 60/132 (45.45%), Postives = 83/132 (62.88%), Query Frame = 2
Query:   74 TVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            +V+DVD  + +   + FLK+ GK+ +P W D  K   S EL P ++DW+YVR A+ AR +Y+R   GV  LR  +G +K RG  P H   ASGSV RKALQ LE I  ++   +  GR +T+ G++DLDRIA
Sbjct:    6 SVKDVDQHEIVQHIAKFLKKSGKVKVPEWSDVTKMGISKELAPLNSDWYYVRTASIARRLYVRSPTGVDALRLVYGGSKRRGVVPNHFAKASGSVIRKALQTLEAIKWVQKHPDGNGRVLTKQGRKDLDRIA 137          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19_ENTHI (40S ribosomal protein S19 OS=Entamoeba histolytica GN=RPS19 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.581e-27
Identity = 61/131 (46.56%), Postives = 86/131 (65.65%), Query Frame = 2
Query:   77 VRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            ++DV A  FI AY+  LK+ GKL IP WVDTVKT    EL P + DW Y+RAAA AR +Y+   +GV  LR+A+G   N+   P+H    SG V+R  LQ LEK+G++   + + GR +T+ G++D+D+IA
Sbjct:    7 IKDVVAIDFIKAYAEHLKKSGKLEIPEWVDTVKTGMCKELAPLNPDWIYIRAAAIARKVYLNNGIGVMALRRAYGDQYNKHYYPSHRTLGSGKVNRYILQQLEKMGIV--GKIQSGRSLTKEGRKDMDKIA 135          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19_CAEEL (40S ribosomal protein S19 OS=Caenorhabditis elegans GN=rps-19 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.086e-26
Identity = 57/132 (43.18%), Postives = 83/132 (62.88%), Query Frame = 2
Query:   74 TVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            +++DVD  +   + + FLK+ GK+ +P W D VK   + EL P D DWFY RAA+ ARH+Y R   G+G  +K +G  K RG  P H   ++G+  RKA+Q LEKI  +E   +  GR +++ G++DLDRIA
Sbjct:    6 SIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRKDLDRIA 136          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19B_DROME (40S ribosomal protein S19b OS=Drosophila melanogaster GN=RpS19b PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 2.524e-25
Identity = 60/140 (42.86%), Postives = 80/140 (57.14%), Query Frame = 2
Query:   62 MGGVTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIAKTTV 481
            M GVTV+++D        +AFLK+ GK+ +P     +KT    E  P D DWFY R A+  RH+Y+R   GVG   K +   K  G RP+ H  +S    RKALQALE   ++E   + GGR++T  GQR+LDRIA   V
Sbjct:    1 MPGVTVKEIDQHVLTKNMAAFLKKSGKIFVPEQAVYMKTGKFKETAPTDDDWFYTRCASIMRHLYLRSPAGVGAFTKVYSGRKRNGVRPSKHCRSSDGCIRKALQALEAANMVERHPD-GGRKLTPQGQRNLDRIANKIV 139          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19E_METJA (30S ribosomal protein S19e OS=Methanocaldococcus jannaschii GN=rps19e PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.344e-25
Identity = 64/134 (47.76%), Postives = 79/134 (58.96%), Query Frame = 2
Query:   71 VTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIAK 472
            VTV DV A K I   +  LK    + +P WVD VKT  S E  P   DW+Y+R A+  R IY+   VGV RLR A+G  KNRG  P H    SG++ RKALQ LEK+G++E   E  GR +T  G+  LD IAK
Sbjct:    2 VTVYDVPADKLIQKTAEKLKEMN-IGVPEWVDFVKTGVSRERRPDQDDWWYIRCASILRKIYIYGPVGVSRLRTAYGGRKNRGHEPEHFYKGSGNIIRKALQELEKLGLVEKTPE--GRVVTPKGRSFLDNIAK 132          
The following BLAST results are available for this feature:
BLAST of FC931228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RS19_AEQIR4.296e-3350.7540S ribosomal protein S19 OS=Aequipecten irradians... [more]
RS19_MYAAR1.250e-3245.5240S ribosomal protein S19 OS=Mya arenaria GN=RPS19... [more]
RS19S_ASCSU7.583e-3047.7340S ribosomal protein S19S OS=Ascaris suum GN=RPS1... [more]
RS19_DICDI1.689e-2947.0140S ribosomal protein S19 OS=Dictyostelium discoid... [more]
RS19A_DROME2.881e-2947.1440S ribosomal protein S19a OS=Drosophila melanogas... [more]
RS19G_ASCSU1.211e-2745.4540S ribosomal protein S19G OS=Ascaris suum GN=RPS1... [more]
RS19_ENTHI1.581e-2746.5640S ribosomal protein S19 OS=Entamoeba histolytica... [more]
RS19_CAEEL5.086e-2643.1840S ribosomal protein S19 OS=Caenorhabditis elegan... [more]
RS19B_DROME2.524e-2542.8640S ribosomal protein S19b OS=Drosophila melanogas... [more]
RS19E_METJA7.344e-2547.7630S ribosomal protein S19e OS=Methanocaldococcus j... [more]

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Properties
Property NameValue
Genbank descriptionC34102H07EF PostHarvP1 Citrus clementina cDNA clone C34102H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931228 ID=FC931228; Name=FC931228; organism=Citrus clementina; type=EST; length=676bp
GGACGCCCAACGCCTCTCTCTCTCTAATCCCTACCCTTCGACCCCTCGAC
AAGTCGCCAAAATGGGTGGTGTTACCGTTCGCGATGTGGACGCGCAGAAG
TTCATCTCTGCCTACTCTGCTTTCCTGAAGCGTCAGGGAAAGCTCCCCAT
CCCCGGATGGGTTGACACTGTCAAGACCTCTGCTTCCAACGAGCTTCCTC
CCCAGGATGCTGACTGGTTCTACGTCCGCGCCGCCGCCTGTGCCCGTCAC
ATCTACATGCGCAAGACCGTCGGTGTCGGTCGTCTTCGCAAGGCCCACGG
CTCCACCAAGAACCGTGGCTCTCGCCCCGCCCACCACGTCGATGCCTCCG
GCTCCGTCGACCGCAAGGCCCTCCAGGCTCTTGAGAAGATCGGTGTCCTC
GAGACCGATGAGGAGAAGGGTGGTCGCCGCATCACTCAGAGCGGTCAGCG
TGATTTGGACCGTATTGCCAAGACCACCGTCGACGAGGAGGAGGAGTCTG
ATGAGGAATAAACGTATCGCAACGATGGGCTTTTAATAGTTCGGGGATAA
GTCGTTTGTTTTTGTGGTTTTGTCTTCGCTACGGCGGCAGGATTTTGGAA
ATGACGGCACATAAATAAAAATTCGGAGCTTGCGGTCCCGTGCGCGACTT
TACGTTTGATTCTTTTTTTTCTTGTT
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