FC931228

Overview
NameFC931228
Unique NameFC931228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19E_METTH (30S ribosomal protein S19e OS=Methanobacterium thermoautotrophicum GN=rps19e PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.888e-21
Identity = 57/132 (43.18%), Postives = 78/132 (59.09%), Query Frame = 2
Query:   74 TVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            TV DV A   I+  +  LK   K+  P WV+ VKT    E  P++ DW+YVRAAA  R +Y+   VGV  LR  +G  K+RGSRP      SG++ R+ALQ LE+ G+++   E+ GR IT  G+  LD+ A
Sbjct:    3 TVYDVPADLLINRVAEELKNDSKVKSPEWVNFVKTGVHKERRPENPDWWYVRAAALLRRVYIDGPVGVNSLRTHYGGKKDRGSRPEKFRRGSGAIIRRALQQLEESGLIK--REENGRVITPEGRSFLDKAA 132          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19E_PYRHO (30S ribosomal protein S19e OS=Pyrococcus horikoshii GN=rps19e PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.136e-17
Identity = 52/132 (39.39%), Postives = 68/132 (51.52%), Query Frame = 2
Query:   74 TVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            TV DV     +   +  LK   ++  P W   VKT    E  P+  DW+Y R A+  R +Y+   VG+ RLR  +G  KNRG  P     A GS+ RKALQ LE  G +E    K GR +T  G+  LD+IA
Sbjct:    3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRVYIDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFIEKVPGK-GRVVTPKGRSFLDKIA 133          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19E_THEVO (30S ribosomal protein S19e OS=Thermoplasma volcanium GN=rps19e PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.653e-16
Identity = 46/137 (33.58%), Postives = 71/137 (51.82%), Query Frame = 2
Query:   71 VTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIAKTTV 481
            V+V+ V +   I+  S  LK + K+  P WV  VKT  S E PP   DW YVRAA+  R +Y+   +G+ R+   +G   +RGS+  H    S S+ R     LE  G+++  ++  GR ++  G   LD  +K  +
Sbjct:    2 VSVKYVPSDMLINYVSGKLKEEKKIKEPNWVKFVKTGVSKEKPPLQDDWIYVRAASMLRKLYINGYLGISRMSSEYGGKVDRGSKRYHAASGSRSITRFLFHELESAGLVQKTQK--GRSLSPQGMSLLDNASKEII 136          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19E_ARCFU (30S ribosomal protein S19e OS=Archaeoglobus fulgidus GN=rps19e PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15
Identity = 49/132 (37.12%), Postives = 70/132 (53.03%), Query Frame = 2
Query:   74 TVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            TV DV A   I   +  LK    +  P W   VKT    E  P+  DW+Y+R A+  R +Y+   VG+ RLR  +G  K RGS+P      SG++ R AL  LE++G ++   E  GR +T  G+  LD++A
Sbjct:    3 TVYDVPADLLIKRVAERLKDM--VAPPEWAKYVKTGVHKERSPEQDDWWYLRLASIFRRVYIDGPVGIERLRTFYGGRKRRGSKPPKFRKGSGAIVRNALHQLEQLGFVKKTRE--GRVVTPMGRSFLDKVA 130          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19E_AERPE (30S ribosomal protein S19e OS=Aeropyrum pernix GN=rps19e PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 50/136 (36.76%), Postives = 71/136 (52.21%), Query Frame = 2
Query:   71 VTVRDVDAQKFISAYSAFLKRQ-GKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMR-KTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIAK 472
            V   +V A   I   +  LK +  ++  P W    KT    E PP D DW+YVRAA+  R +Y   + +G+   R  +G  +NRGS P H   A GSV RK LQ LE+ G++     + GR I+ +G+  LD  A+
Sbjct:    2 VNALEVPADLLIRRVARKLKEKYPQVKPPAWAYFAKTGPHKERPPTDRDWWYVRAASILRKLYKSPEPIGIETFRTIYGGRQNRGSAPEHFRKAGGSVPRKILQQLEEAGLVVKVPGR-GRTISPAGRSLLDTTAR 136          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19E_THEAC (30S ribosomal protein S19e OS=Thermoplasma acidophilum GN=rps19e PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14
Identity = 46/137 (33.58%), Postives = 69/137 (50.36%), Query Frame = 2
Query:   71 VTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIAKTTV 481
            V+V+ V +   I+  S  LK + K+  P W   VKT  S E  P + DW YVRAAA  R +Y+   +G+ R+   +G   +RGS+  H    S S+ R     LEK G ++   +  GR ++  G   LD  +K  +
Sbjct:    2 VSVKYVPSDLLINYVSEKLKSEKKIAEPDWSKYVKTGISREKSPVNRDWIYVRAAAMLRKLYINGYLGISRMSSEYGGKVDRGSKRYHAAQGSRSIIRYLFHELEKAGYVQKTPK--GRSLSPQGMSLLDNASKDII 136          
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19E_HALMA (30S ribosomal protein S19e OS=Haloarcula marismortui GN=rps19e PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14
Identity = 48/136 (35.29%), Postives = 70/136 (51.47%), Query Frame = 2
Query:   74 TVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGS----RPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469
            T+ DV  ++ I A +  L  +  +  P W +  KT    ELPP+  D++  RAA+  R + +   VGV  LR  +G++K   +    RP      SG++ R ALQ LE  G +ET  E  GRR+T  G+  LD  A
Sbjct:    3 TLYDVPPEELIEALTETLADEDDIEAPDWAEFTKTGVDRELPPEQEDFWTRRAASLLRKVAVDGPVGVNALRSEYGTSKQGTTRYRVRPHQKTKGSGNIIRTALQQLEDAGYVET-SENDGRRVTGDGRSLLDDTA 137          
The following BLAST results are available for this feature:
BLAST of FC931228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RS19E_METTH2.888e-2143.1830S ribosomal protein S19e OS=Methanobacterium the... [more]
RS19E_PYRHO1.136e-1739.3930S ribosomal protein S19e OS=Pyrococcus horikoshi... [more]
RS19E_THEVO3.653e-1633.5830S ribosomal protein S19e OS=Thermoplasma volcani... [more]
RS19E_ARCFU1.063e-1537.1230S ribosomal protein S19e OS=Archaeoglobus fulgid... [more]
RS19E_AERPE1.535e-1436.7630S ribosomal protein S19e OS=Aeropyrum pernix GN=... [more]
RS19E_THEAC2.005e-1433.5830S ribosomal protein S19e OS=Thermoplasma acidoph... [more]
RS19E_HALMA4.466e-1435.2930S ribosomal protein S19e OS=Haloarcula marismort... [more]

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Properties
Property NameValue
Genbank descriptionC34102H07EF PostHarvP1 Citrus clementina cDNA clone C34102H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931228 ID=FC931228; Name=FC931228; organism=Citrus clementina; type=EST; length=676bp
GGACGCCCAACGCCTCTCTCTCTCTAATCCCTACCCTTCGACCCCTCGAC
AAGTCGCCAAAATGGGTGGTGTTACCGTTCGCGATGTGGACGCGCAGAAG
TTCATCTCTGCCTACTCTGCTTTCCTGAAGCGTCAGGGAAAGCTCCCCAT
CCCCGGATGGGTTGACACTGTCAAGACCTCTGCTTCCAACGAGCTTCCTC
CCCAGGATGCTGACTGGTTCTACGTCCGCGCCGCCGCCTGTGCCCGTCAC
ATCTACATGCGCAAGACCGTCGGTGTCGGTCGTCTTCGCAAGGCCCACGG
CTCCACCAAGAACCGTGGCTCTCGCCCCGCCCACCACGTCGATGCCTCCG
GCTCCGTCGACCGCAAGGCCCTCCAGGCTCTTGAGAAGATCGGTGTCCTC
GAGACCGATGAGGAGAAGGGTGGTCGCCGCATCACTCAGAGCGGTCAGCG
TGATTTGGACCGTATTGCCAAGACCACCGTCGACGAGGAGGAGGAGTCTG
ATGAGGAATAAACGTATCGCAACGATGGGCTTTTAATAGTTCGGGGATAA
GTCGTTTGTTTTTGTGGTTTTGTCTTCGCTACGGCGGCAGGATTTTGGAA
ATGACGGCACATAAATAAAAATTCGGAGCTTGCGGTCCCGTGCGCGACTT
TACGTTTGATTCTTTTTTTTCTTGTT
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