FC931228
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19E_METTH (30S ribosomal protein S19e OS=Methanobacterium thermoautotrophicum GN=rps19e PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.888e-21 Identity = 57/132 (43.18%), Postives = 78/132 (59.09%), Query Frame = 2 Query: 74 TVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469 TV DV A I+ + LK K+ P WV+ VKT E P++ DW+YVRAAA R +Y+ VGV LR +G K+RGSRP SG++ R+ALQ LE+ G+++ E+ GR IT G+ LD+ A Sbjct: 3 TVYDVPADLLINRVAEELKNDSKVKSPEWVNFVKTGVHKERRPENPDWWYVRAAALLRRVYIDGPVGVNSLRTHYGGKKDRGSRPEKFRRGSGAIIRRALQQLEESGLIK--REENGRVITPEGRSFLDKAA 132
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19E_PYRHO (30S ribosomal protein S19e OS=Pyrococcus horikoshii GN=rps19e PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.136e-17 Identity = 52/132 (39.39%), Postives = 68/132 (51.52%), Query Frame = 2 Query: 74 TVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469 TV DV + + LK ++ P W VKT E P+ DW+Y R A+ R +Y+ VG+ RLR +G KNRG P A GS+ RKALQ LE G +E K GR +T G+ LD+IA Sbjct: 3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRVYIDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFIEKVPGK-GRVVTPKGRSFLDKIA 133
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19E_THEVO (30S ribosomal protein S19e OS=Thermoplasma volcanium GN=rps19e PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.653e-16 Identity = 46/137 (33.58%), Postives = 71/137 (51.82%), Query Frame = 2 Query: 71 VTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIAKTTV 481 V+V+ V + I+ S LK + K+ P WV VKT S E PP DW YVRAA+ R +Y+ +G+ R+ +G +RGS+ H S S+ R LE G+++ ++ GR ++ G LD +K + Sbjct: 2 VSVKYVPSDMLINYVSGKLKEEKKIKEPNWVKFVKTGVSKEKPPLQDDWIYVRAASMLRKLYINGYLGISRMSSEYGGKVDRGSKRYHAASGSRSITRFLFHELESAGLVQKTQK--GRSLSPQGMSLLDNASKEII 136
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19E_ARCFU (30S ribosomal protein S19e OS=Archaeoglobus fulgidus GN=rps19e PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15 Identity = 49/132 (37.12%), Postives = 70/132 (53.03%), Query Frame = 2 Query: 74 TVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469 TV DV A I + LK + P W VKT E P+ DW+Y+R A+ R +Y+ VG+ RLR +G K RGS+P SG++ R AL LE++G ++ E GR +T G+ LD++A Sbjct: 3 TVYDVPADLLIKRVAERLKDM--VAPPEWAKYVKTGVHKERSPEQDDWWYLRLASIFRRVYIDGPVGIERLRTFYGGRKRRGSKPPKFRKGSGAIVRNALHQLEQLGFVKKTRE--GRVVTPMGRSFLDKVA 130
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19E_AERPE (30S ribosomal protein S19e OS=Aeropyrum pernix GN=rps19e PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14 Identity = 50/136 (36.76%), Postives = 71/136 (52.21%), Query Frame = 2 Query: 71 VTVRDVDAQKFISAYSAFLKRQ-GKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMR-KTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIAK 472 V +V A I + LK + ++ P W KT E PP D DW+YVRAA+ R +Y + +G+ R +G +NRGS P H A GSV RK LQ LE+ G++ + GR I+ +G+ LD A+ Sbjct: 2 VNALEVPADLLIRRVARKLKEKYPQVKPPAWAYFAKTGPHKERPPTDRDWWYVRAASILRKLYKSPEPIGIETFRTIYGGRQNRGSAPEHFRKAGGSVPRKILQQLEEAGLVVKVPGR-GRTISPAGRSLLDTTAR 136
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19E_THEAC (30S ribosomal protein S19e OS=Thermoplasma acidophilum GN=rps19e PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14 Identity = 46/137 (33.58%), Postives = 69/137 (50.36%), Query Frame = 2 Query: 71 VTVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGSRPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIAKTTV 481 V+V+ V + I+ S LK + K+ P W VKT S E P + DW YVRAAA R +Y+ +G+ R+ +G +RGS+ H S S+ R LEK G ++ + GR ++ G LD +K + Sbjct: 2 VSVKYVPSDLLINYVSEKLKSEKKIAEPDWSKYVKTGISREKSPVNRDWIYVRAAAMLRKLYINGYLGISRMSSEYGGKVDRGSKRYHAAQGSRSIIRYLFHELEKAGYVQKTPK--GRSLSPQGMSLLDNASKDII 136
BLAST of FC931228 vs. ExPASy Swiss-Prot
Match: RS19E_HALMA (30S ribosomal protein S19e OS=Haloarcula marismortui GN=rps19e PE=1 SV=3) HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14 Identity = 48/136 (35.29%), Postives = 70/136 (51.47%), Query Frame = 2 Query: 74 TVRDVDAQKFISAYSAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWFYVRAAACARHIYMRKTVGVGRLRKAHGSTKNRGS----RPAHHVDASGSVDRKALQALEKIGVLETDEEKGGRRITQSGQRDLDRIA 469 T+ DV ++ I A + L + + P W + KT ELPP+ D++ RAA+ R + + VGV LR +G++K + RP SG++ R ALQ LE G +ET E GRR+T G+ LD A Sbjct: 3 TLYDVPPEELIEALTETLADEDDIEAPDWAEFTKTGVDRELPPEQEDFWTRRAASLLRKVAVDGPVGVNALRSEYGTSKQGTTRYRVRPHQKTKGSGNIIRTALQQLEDAGYVET-SENDGRRVTGDGRSLLDDTA 137 The following BLAST results are available for this feature:
BLAST of FC931228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 37
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931228 ID=FC931228; Name=FC931228; organism=Citrus clementina; type=EST; length=676bpback to top |