FC931232

Overview
NameFC931232
Unique NameFC931232
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_ALKOO (10 kDa chaperonin OS=Alkaliphilus oremlandii (strain OhILAs) GN=groS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.202e-18
Identity = 43/93 (46.24%), Postives = 66/93 (70.97%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +IKPLGDRV++K    EE T  GI LP +A+ +PQ  EV+AVG G  +   ++ + VK G +VI+SKYAGTE++F+G  + IL++ D++ ++E
Sbjct:    2 NIKPLGDRVVIKRVEAEETTKSGIVLPGSAKEQPQLAEVMAVGPGGVIEGKEVVMEVKVGDKVIFSKYAGTEVKFDGVEYTILKQSDILAVVE 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_THET8 (10 kDa chaperonin OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=groS PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18
Identity = 46/95 (48.42%), Postives = 66/95 (69.47%), Query Frame = 2
Query:  284 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            T IKPLGDRV+VK    E KT GGI LP TA+ KPQ G+V+AVG G+ +    ++ + VK G  V+++KY GTE+E +G  ++IL E D++ +L+
Sbjct:    7 TVIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 101          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_THET2 (10 kDa chaperonin OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=groS PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18
Identity = 46/95 (48.42%), Postives = 66/95 (69.47%), Query Frame = 2
Query:  284 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            T IKPLGDRV+VK    E KT GGI LP TA+ KPQ G+V+AVG G+ +    ++ + VK G  V+++KY GTE+E +G  ++IL E D++ +L+
Sbjct:    7 TVIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 101          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_COPPD (10 kDa chaperonin OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=groS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18
Identity = 45/92 (48.91%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            IKPLGDRVL+K    EEKT  GI +P TA+ KPQ G+V+AVG G+T+   T++ + V+ G  V++SKYAGTE++ +G  +LI+ E D++ ++
Sbjct:    3 IKPLGDRVLLKPMEEEEKTKSGIVIPDTAKEKPQKGKVLAVGTGRTLDNGTRVPLEVQVGDIVVFSKYAGTEVKVDGEEYLIVSERDILAVV 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_CHLTE (10 kDa chaperonin OS=Chlorobium tepidum GN=groS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            ++KPL DRV+VK    EEKT GG+++P T + KP  GEVVAVG GK     + + + VK G +V+Y KY+GTE+   G ++LI+RE D+  IL
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPMYGEVVAVGPGKVSDAGQVVAMQVKAGDKVLYGKYSGTEVHVEGEDYLIMRESDIFAIL 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_BACP2 (10 kDa chaperonin OS=Bacillus pumilus (strain SAFR-032) GN=groS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18
Identity = 41/92 (44.57%), Postives = 66/92 (71.74%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ G++VA G G+ +    ++ + V  G ++I+SKYAGTE+++ G  +LILRE D++ ++
Sbjct:    2 LKPLGDRVIIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGSGRVLESGERVALEVNTGDRIIFSKYAGTEVKYEGKEYLILRESDILAVI 93          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_ALKMQ (10 kDa chaperonin OS=Alkaliphilus metalliredigens (strain QYMF) GN=groS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18
Identity = 43/93 (46.24%), Postives = 67/93 (72.04%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +IKPLGD+V++K    E+KT  GI LP +A+ +PQ  EVVAVG G  V   ++ + +K G +VI+SKYAGTE++ +G  + ILR++D++ ++E
Sbjct:    2 NIKPLGDKVVIKKVEAEDKTKSGIVLPGSAKEQPQMAEVVAVGPGGVVEGKEIIMELKVGDKVIFSKYAGTEVKLDGEEYTILRQNDILAVVE 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_LACZE (10 kDa chaperonin OS=Lactobacillus zeae GN=groS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 45/91 (49.45%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGI 559
            +KPLGDRV+V++   EE+T GGI L + A+ KPQ G+VVAVGEG    + K L ++VK G  V+Y KYAG+E+++ G ++L+L E D++ I
Sbjct:    2 LKPLGDRVIVEVVEEEEQTVGGIVLANNAKQKPQTGKVVAVGEGALTPEGKRLPMAVKVGDTVLYDKYAGSEVKYEGQDYLVLHEKDIMAI 92          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_LACCB (10 kDa chaperonin OS=Lactobacillus casei (strain BL23) GN=groS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 45/91 (49.45%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGI 559
            +KPLGDRV+V++   EE+T GGI L + A+ KPQ G+VVAVGEG    + K L ++VK G  V+Y KYAG+E+++ G ++L+L E D++ I
Sbjct:    2 LKPLGDRVIVEVVEEEEQTVGGIVLANNAKQKPQTGKVVAVGEGALTPEGKRLPMAVKVGDTVLYDKYAGSEVKYEGQDYLVLHEKDIMAI 92          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_LACC3 (10 kDa chaperonin OS=Lactobacillus casei (strain ATCC 334) GN=groS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 45/91 (49.45%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGI 559
            +KPLGDRV+V++   EE+T GGI L + A+ KPQ G+VVAVGEG    + K L ++VK G  V+Y KYAG+E+++ G ++L+L E D++ I
Sbjct:    2 LKPLGDRVIVEVVEEEEQTVGGIVLANNAKQKPQTGKVVAVGEGALTPEGKRLPMAVKVGDTVLYDKYAGSEVKYEGQDYLVLHEKDIMAI 92          
The following BLAST results are available for this feature:
BLAST of FC931232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 492
Match NameE-valueIdentityDescription
CH10_ALKOO3.202e-1846.2410 kDa chaperonin OS=Alkaliphilus oremlandii (stra... [more]
CH10_THET84.182e-1848.4210 kDa chaperonin OS=Thermus thermophilus (strain ... [more]
CH10_THET24.182e-1848.4210 kDa chaperonin OS=Thermus thermophilus (strain ... [more]
CH10_COPPD4.182e-1848.9110 kDa chaperonin OS=Coprothermobacter proteolytic... [more]
CH10_CHLTE4.182e-1848.3910 kDa chaperonin OS=Chlorobium tepidum GN=groS PE... [more]
CH10_BACP24.182e-1844.5710 kDa chaperonin OS=Bacillus pumilus (strain SAFR... [more]
CH10_ALKMQ4.182e-1846.2410 kDa chaperonin OS=Alkaliphilus metalliredigens ... [more]
CH10_LACZE7.134e-1849.4510 kDa chaperonin OS=Lactobacillus zeae GN=groS PE... [more]
CH10_LACCB7.134e-1849.4510 kDa chaperonin OS=Lactobacillus casei (strain B... [more]
CH10_LACC37.134e-1849.4510 kDa chaperonin OS=Lactobacillus casei (strain A... [more]

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Properties
Property NameValue
Genbank descriptionC34102H11EF PostHarvP1 Citrus clementina cDNA clone C34102H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931232 ID=FC931232; Name=FC931232; organism=Citrus clementina; type=EST; length=702bp
GCTCGACTCTTCTTCAATTTCAACTAGAAACCTTATCAAACTACTCGCTC
GCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATC
TGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGGTTCC
AGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTCAAGT
TCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCGTCGCTTGGTC
GTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAACCTTT
GGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACTGATG
GTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCAAGCAGGTGAG
GTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTAAACTGGACAT
ATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGGACTG
AGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGGAGGATGACGTA
GTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTAATGA
CAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACTGCTGGAGGTT
TGTTGTTGACGGAGGCAAGCAAGGAGAAACCCTTCATTGGAATGGTCATT
GC
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