FC931232

Overview
NameFC931232
Unique NameFC931232
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11254 contig Ccv1_Contig11254:120..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_DESOH (10 kDa chaperonin OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=groS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 46/92 (50.00%), Postives = 64/92 (69.57%), Query Frame = 2
Query:  293 KPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +PL DR+LVK    E KT GGI +P TA+ KP  G+V+AVG G+     KL  + VK G +V++ KY GTE++ +G  +LI+REDD++GILE
Sbjct:    4 RPLHDRILVKRVEEETKTKGGIIIPDTAKEKPIEGKVMAVGNGRLGEDGKLIPLEVKKGDRVLFGKYGGTEVKMDGQEYLIMREDDILGILE 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_DESMR (10 kDa chaperonin OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=groS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 45/93 (48.39%), Postives = 65/93 (69.89%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +KPLGDRVLVK    EE T GGI +P +A+ KP  GEV+AVG GK     K L + V+ G  V+++KYAGTE++ +  + L++REDD++ ++E
Sbjct:    3 LKPLGDRVLVKRLEQEEVTKGGIIIPDSAKEKPMKGEVIAVGPGKLAEDGKHLKMHVEKGDLVLFNKYAGTEIKVDDEDFLVMREDDILAVIE 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH102_RHILO (10 kDa chaperonin 2 OS=Rhizobium loti GN=groS2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 43/94 (45.74%), Postives = 66/94 (70.21%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            + +PL DR+LV+    EEKT GGI +P TA+ KPQ GEV+A+G G      KL  + VK G ++++ K++GTE++ NG + LI++E DV+G++E
Sbjct:    2 TFRPLHDRILVRRIEAEEKTAGGIIIPDTAKEKPQEGEVIAIGPGARDESGKLTPLDVKAGDRILFGKWSGTEIKLNGEDLLIMKESDVMGVIE 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_LEPIN (10 kDa chaperonin OS=Leptospira interrogans GN=groS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18
Identity = 43/93 (46.24%), Postives = 63/93 (67.74%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            SIKPLGDRVLV+ +   E+  G IF+P TA+ KPQ G+VV +G GK      + + VK G  V+Y KY+GTE++  G  +LI+RE D++ +++
Sbjct:    3 SIKPLGDRVLVEPRQEAEEKIGSIFVPDTAKEKPQEGKVVEIGSGKYEDGKLIPLEVKVGDTVLYGKYSGTEIKSEGKEYLIIRESDILAVVK 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_LEPIC (10 kDa chaperonin OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=groS PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18
Identity = 43/93 (46.24%), Postives = 63/93 (67.74%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            SIKPLGDRVLV+ +   E+  G IF+P TA+ KPQ G+VV +G GK      + + VK G  V+Y KY+GTE++  G  +LI+RE D++ +++
Sbjct:    3 SIKPLGDRVLVEPRQEAEEKIGSIFVPDTAKEKPQEGKVVEIGSGKYEDGKLIPLEVKVGDTVLYGKYSGTEIKSEGKEYLIIRESDILAVVK 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_CORDI (10 kDa chaperonin OS=Corynebacterium diphtheriae GN=groS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18
Identity = 43/93 (46.24%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +IKPL DRVLV+I   E  T  G+ +P +A+ KPQ G VVA G G+  G  ++ + +K G  V++SKY GTEL++NG  +L+L   DV+ I+E
Sbjct:    5 NIKPLEDRVLVQISEAETTTASGLVIPDSAKEKPQEGVVVAAGPGRFDGDDRVPMDIKEGDTVVFSKYGGTELKYNGEEYLLLNARDVLAIIE 97          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_SYMTH (10 kDa chaperonin OS=Symbiobacterium thermophilum GN=groS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.217e-17
Identity = 46/95 (48.42%), Postives = 69/95 (72.63%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLIL-REDDVVGILE 565
            ++KPLG RV++K    EE+T  GI LP TA+ KPQ G+V+AVG G+T+   TK+++ VK G  VI+SKYAGTE++ +G  ++IL  E D++ I++
Sbjct:    2 NVKPLGARVVIKPLEKEERTKSGIVLPDTAKEKPQQGKVIAVGPGRTLESGTKVELEVKEGDTVIFSKYAGTEVKIDGEEYIILDGERDILAIVQ 96          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_LEPBL (10 kDa chaperonin OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=groS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.217e-17
Identity = 43/93 (46.24%), Postives = 63/93 (67.74%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            SIKPLGDRVLV+ +   E+  G IF+P TA+ KPQ G+VV +G GK      + + VK G  V+Y KY+GTE++  G  +LI+RE D++ +++
Sbjct:    3 SIKPLGDRVLVEPRQEAEEKIGSIFVPDTAKEKPQEGKVVEIGSGKYEDGKLVPLEVKVGDTVLYGKYSGTEIKSEGKEYLIIRESDILAVVK 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_LEPBJ (10 kDa chaperonin OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=groS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.217e-17
Identity = 43/93 (46.24%), Postives = 63/93 (67.74%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            SIKPLGDRVLV+ +   E+  G IF+P TA+ KPQ G+VV +G GK      + + VK G  V+Y KY+GTE++  G  +LI+RE D++ +++
Sbjct:    3 SIKPLGDRVLVEPRQEAEEKIGSIFVPDTAKEKPQEGKVVEIGSGKYEDGKLVPLEVKVGDTVLYGKYSGTEIKSEGKEYLIIRESDILAVVK 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_ACIF5 (10 kDa chaperonin OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=groS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17
Identity = 42/93 (45.16%), Postives = 65/93 (69.89%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            ++PL DRV+++    E+KT GGI +P TA+ KP  GE+VA G GK +   K+  + VK G QV+++KYAGTE++  G   L++REDD++ ++E
Sbjct:    3 LRPLHDRVVIRRLEEEQKTAGGIIIPDTAKEKPVRGEIVAAGHGKILEDGKVRALDVKTGDQVLFAKYAGTEIKVEGEELLVMREDDIMAVIE 95          
The following BLAST results are available for this feature:
BLAST of FC931232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 492
Match NameE-valueIdentityDescription
CH10_DESOH7.134e-1850.0010 kDa chaperonin OS=Desulfococcus oleovorans (str... [more]
CH10_DESMR7.134e-1848.3910 kDa chaperonin OS=Desulfovibrio magneticus (str... [more]
CH102_RHILO7.134e-1845.7410 kDa chaperonin 2 OS=Rhizobium loti GN=groS2 PE=... [more]
CH10_LEPIN9.317e-1846.2410 kDa chaperonin OS=Leptospira interrogans GN=gro... [more]
CH10_LEPIC9.317e-1846.2410 kDa chaperonin OS=Leptospira interrogans serogr... [more]
CH10_CORDI9.317e-1846.2410 kDa chaperonin OS=Corynebacterium diphtheriae G... [more]
CH10_SYMTH1.217e-1748.4210 kDa chaperonin OS=Symbiobacterium thermophilum ... [more]
CH10_LEPBL1.217e-1746.2410 kDa chaperonin OS=Leptospira borgpetersenii ser... [more]
CH10_LEPBJ1.217e-1746.2410 kDa chaperonin OS=Leptospira borgpetersenii ser... [more]
CH10_ACIF51.589e-1745.1610 kDa chaperonin OS=Acidithiobacillus ferrooxidan... [more]

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Properties
Property NameValue
Genbank descriptionC34102H11EF PostHarvP1 Citrus clementina cDNA clone C34102H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931232 ID=FC931232; Name=FC931232; organism=Citrus clementina; type=EST; length=702bp
GCTCGACTCTTCTTCAATTTCAACTAGAAACCTTATCAAACTACTCGCTC
GCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATC
TGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGGTTCC
AGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTCAAGT
TCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCGTCGCTTGGTC
GTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAACCTTT
GGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACTGATG
GTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCAAGCAGGTGAG
GTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTAAACTGGACAT
ATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGGACTG
AGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGGAGGATGACGTA
GTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTAATGA
CAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACTGCTGGAGGTT
TGTTGTTGACGGAGGCAAGCAAGGAGAAACCCTTCATTGGAATGGTCATT
GC
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