FC931232

Overview
NameFC931232
Unique NameFC931232
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_ACIF2 (10 kDa chaperonin OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=groS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17
Identity = 42/93 (45.16%), Postives = 65/93 (69.89%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            ++PL DRV+++    E+KT GGI +P TA+ KP  GE+VA G GK +   K+  + VK G QV+++KYAGTE++  G   L++REDD++ ++E
Sbjct:    3 LRPLHDRVVIRRLEEEQKTAGGIIIPDTAKEKPVRGEIVAAGHGKILEDGKVRALDVKTGDQVLFAKYAGTEIKVEGEELLVMREDDIMAVIE 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_SYNPX (10 kDa chaperonin OS=Synechococcus sp. (strain WH8102) GN=groS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  284 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +++KPLGDRV +K+   EEKT GGI LP TA+ KPQ GEVV VG GK     ++    V  G +V+YSKYAGT+++  G   ++L E D++ I+
Sbjct:    9 STVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLGGDEFVLLTEKDILAIV 102          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_RHOCS (10 kDa chaperonin OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=groS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 43/92 (46.74%), Postives = 65/92 (70.65%), Query Frame = 2
Query:  293 KPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +PL DRV+VK    E+KT GGI +P TA+ KPQ GE++AVG G      KL  + VK G +V++ K++GTE++ +G  +LI++E D++G+LE
Sbjct:    4 RPLHDRVVVKRVESEQKTAGGIIIPDTAKEKPQEGEIIAVGSGARDESGKLIALDVKVGDRVLFGKWSGTEVKIDGVEYLIMKESDIMGVLE 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_LACS1 (10 kDa chaperonin OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=groS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 38/93 (40.86%), Postives = 68/93 (73.12%), Query Frame = 2
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +KPLGDRV++K++  EE++ GGI + S A+ KP  GEV+AVG G+ +    +++  VK G  V++ KYAG+E+++ G  +L++RE+D++ +++
Sbjct:    2 LKPLGDRVVLKVQKEEEQSIGGIVIASNAKEKPTTGEVIAVGNGRILDNGQRVEPEVKVGQSVVFDKYAGSEVKYEGEEYLVIRENDIIAVID 94          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_GEOSM (10 kDa chaperonin OS=Geobacter sp. (strain M21) GN=groS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 43/94 (45.74%), Postives = 66/94 (70.21%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +++PL DR++VK       T GG+++P TA+ KPQ GEVVAVG GK     K+  I +K G +V++ KYAG+E++  G + LI+REDD++G++E
Sbjct:    2 NLRPLQDRIIVKRVEEATMTAGGLYIPETAKEKPQQGEVVAVGNGKRGDDGKVYPIDLKVGDKVLFGKYAGSEVKLEGEDFLIMREDDILGVVE 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_DEIRA (10 kDa chaperonin OS=Deinococcus radiodurans GN=groS PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 46/94 (48.94%), Postives = 67/94 (71.28%), Query Frame = 2
Query:  290 IKPLGDRVLVKI-KTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +KPLGDRVLV+I +  E+KT GG+++P +A+ K Q G+VVAVG GKT+   TK+ + VK G  V ++KY GTE+   G N+ +L E D++ I+E
Sbjct:    2 LKPLGDRVLVEIIEEAEQKTAGGLYVPDSAKEKSQRGKVVAVGTGKTLDNGTKVAMEVKEGDTVYFAKYGGTEVSLEGKNYSLLSERDLLAIVE 95          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_BACTN (10 kDa chaperonin OS=Bacteroides thetaiotaomicron GN=groS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 48/92 (52.17%), Postives = 60/92 (65.22%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +IKPL DRVL+     EEKT GGI +P TA+ KP  GEVVAVG     G    ++ +K G  V+Y KYAGTELE  G  +LI+R+ DV+ IL
Sbjct:    2 NIKPLADRVLILPAPAEEKTIGGIIIPDTAKEKPLKGEVVAVGH----GTKDEEMVLKVGDTVLYGKYAGTELEVEGTKYLIMRQSDVLAIL 89          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_BACFR (10 kDa chaperonin OS=Bacteroides fragilis GN=groS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 47/92 (51.09%), Postives = 60/92 (65.22%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +IKPL DRVL+     EEKT GGI +P TA+ KP  GEVVAVG     G    ++ +K G  V+Y KYAGTELE  G  +LI+R+ DV+ +L
Sbjct:    2 NIKPLADRVLILPAPAEEKTIGGIIIPDTAKEKPLKGEVVAVGH----GTKDEEMVLKAGDTVLYGKYAGTELEVEGTKYLIMRQSDVLAVL 89          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH10_BACFN (10 kDa chaperonin OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=groS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 47/92 (51.09%), Postives = 60/92 (65.22%), Query Frame = 2
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 562
            +IKPL DRVL+     EEKT GGI +P TA+ KP  GEVVAVG     G    ++ +K G  V+Y KYAGTELE  G  +LI+R+ DV+ +L
Sbjct:    2 NIKPLADRVLILPAPAEEKTIGGIIIPDTAKEKPLKGEVVAVGH----GTKDEEMVLKAGDTVLYGKYAGTELEVEGTKYLIMRQSDVLAVL 89          
BLAST of FC931232 vs. ExPASy Swiss-Prot
Match: CH101_BRAJA (10 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN=groS1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 42/92 (45.65%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  293 KPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 565
            +PL DRVLV+    EEKT GGI +P TA+ KPQ GE++A G G    + +L  I VKPG +V++ K++GTE++ +G ++LI++E D++G+++
Sbjct:    4 RPLHDRVLVRRIDAEEKTAGGIIIPDTAKEKPQEGEIIAAGSGGRNEQGQLIPIDVKPGDRVLFGKWSGTEVKIDGQDYLIMKESDLLGVVD 95          
The following BLAST results are available for this feature:
BLAST of FC931232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 492
Match NameE-valueIdentityDescription
CH10_ACIF21.589e-1745.1610 kDa chaperonin OS=Acidithiobacillus ferrooxidan... [more]
CH10_SYNPX2.076e-1747.8710 kDa chaperonin OS=Synechococcus sp. (strain WH8... [more]
CH10_RHOCS2.076e-1746.7410 kDa chaperonin OS=Rhodospirillum centenum (stra... [more]
CH10_LACS12.076e-1740.8610 kDa chaperonin OS=Lactobacillus salivarius subs... [more]
CH10_GEOSM2.076e-1745.7410 kDa chaperonin OS=Geobacter sp. (strain M21) GN... [more]
CH10_DEIRA2.076e-1748.9410 kDa chaperonin OS=Deinococcus radiodurans GN=gr... [more]
CH10_BACTN2.076e-1752.1710 kDa chaperonin OS=Bacteroides thetaiotaomicron ... [more]
CH10_BACFR2.076e-1751.0910 kDa chaperonin OS=Bacteroides fragilis GN=groS ... [more]
CH10_BACFN2.076e-1751.0910 kDa chaperonin OS=Bacteroides fragilis (strain ... [more]
CH101_BRAJA2.076e-1745.6510 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN... [more]

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Properties
Property NameValue
Genbank descriptionC34102H11EF PostHarvP1 Citrus clementina cDNA clone C34102H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931232 ID=FC931232; Name=FC931232; organism=Citrus clementina; type=EST; length=702bp
GCTCGACTCTTCTTCAATTTCAACTAGAAACCTTATCAAACTACTCGCTC
GCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATC
TGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGGTTCC
AGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTCAAGT
TCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCGTCGCTTGGTC
GTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAACCTTT
GGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACTGATG
GTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCAAGCAGGTGAG
GTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTAAACTGGACAT
ATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGGACTG
AGTTGGAGTTCAATGGCGCAAATCATCTCATATTGAGGGAGGATGACGTA
GTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTAATGA
CAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACTGCTGGAGGTT
TGTTGTTGACGGAGGCAAGCAAGGAGAAACCCTTCATTGGAATGGTCATT
GC
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